Rh1DG187200

RNA polymerase III

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0003703
Physical Location & Seq
Reverse (-)
37540367 .. 37542485
2119 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG187200.1

Sequence Viewer

Length: 195 bp
ATGTCTCGAGCCACTTTTCAGAGCGACCCGGAGGAGGAAGAGCAAGCTAGACATGCTGAAAAGGAGAGGGAGTTGCTCATACGTTTCCATGAACAATCTTTGAGGGCAAAGCTGAAAAACAAAAAGAAAGGTAGAGGCTTTTCTCACTTTGCTTTGAGACTCTTGGATTTCAATTTGGAGTTCAAATTTTACTAG

Protein Analysis

64

Amino Acids

7.78

Weight (kDa)

9.52

Isoelectric Point (pI)

66.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 185
AfiI CCNNNNNNNGG 1 cut(s) 34
AgsI TTSAA 2 cut(s) 172, 184
AluBI AGCT 2 cut(s) 47, 112
AluI AGCT 2 cut(s) 47, 112
Alw26I GTCTC 2 cut(s) 9, 151
Ama87I CYCGRG 1 cut(s) 6
ApoI RAATTY 1 cut(s) 185
AsuC2I CCSGG 1 cut(s) 29
AvaI CYCGRG 1 cut(s) 6
BcnI CCSGG 1 cut(s) 29
BcoDI GTCTC 2 cut(s) 9, 151
BfaI CTAG 2 cut(s) 48, 193
Bme1390I CCNGG 1 cut(s) 29
BmeT110I CYCGRG 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 29
BpuMI CCSGG 1 cut(s) 29
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
Bsc4I CCNNNNNNNGG 1 cut(s) 34
BseLI CCNNNNNNNGG 1 cut(s) 34
BseRI GAGGAG 1 cut(s) 47
BsiHKCI CYCGRG 1 cut(s) 6
BsiSI CCGG 1 cut(s) 29
BslI CCNNNNNNNGG 1 cut(s) 34
BsmAI GTCTC 2 cut(s) 9, 151
BsoBI CYCGRG 1 cut(s) 6
BspQI GCTCTTC 1 cut(s) 33
Bst6I CTCTTC 1 cut(s) 33
BstC8I GCNNGC 1 cut(s) 45
BstMAI GTCTC 2 cut(s) 9, 151
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstNSI RCATGY 1 cut(s) 56
BstSCI CCNGG 1 cut(s) 27
Cac8I GCNNGC 1 cut(s) 45
CviAII CATG 2 cut(s) 53, 89
CviJI RGCY 4 cut(s) 11, 47, 112, 138
CviKI_1 RGCY 4 cut(s) 11, 47, 112, 138
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
Eco88I CYCGRG 1 cut(s) 6
FaeI CATG 2 cut(s) 56, 92
FaiI YATR 3 cut(s) 54, 80, 90
FatI CATG 2 cut(s) 52, 88
FspBI CTAG 2 cut(s) 48, 193
HapII CCGG 1 cut(s) 29
Hin1II CATG 2 cut(s) 56, 92
HinfI GANTC 1 cut(s) 159
HpaII CCGG 1 cut(s) 29
Hpy188I TCNGA 1 cut(s) 21
Hpy188III TCNNGA 1 cut(s) 6
HpyCH4IV ACGT 1 cut(s) 82
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
HpySE526I ACGT 1 cut(s) 82
Hsp92II CATG 2 cut(s) 56, 92
LguI GCTCTTC 1 cut(s) 33
LpnPI CCDG 1 cut(s) 42
MaeI CTAG 2 cut(s) 48, 193
MaeII ACGT 1 cut(s) 82
MboII GAAGA 1 cut(s) 50
MluCI AATT 2 cut(s) 172, 185
MlyI GAGTC 1 cut(s) 153
MnlI CCTC 5 cut(s) 25, 28, 60, 96, 128
MspI CCGG 1 cut(s) 29
MspR9I CCNGG 1 cut(s) 29
MwoI GCNNNNNNNGC 1 cut(s) 53
NciI CCSGG 1 cut(s) 29
NlaIII CATG 2 cut(s) 56, 92
NspI RCATGY 1 cut(s) 56
PaeR7I CTCGAG 1 cut(s) 6
PciSI GCTCTTC 1 cut(s) 33
PleI GAGTC 1 cut(s) 153
PpsI GAGTC 1 cut(s) 153
SapI GCTCTTC 1 cut(s) 33
SchI GAGTC 1 cut(s) 153
ScrFI CCNGG 1 cut(s) 29
SetI ASST 4 cut(s) 49, 85, 114, 133
Sfr274I CTCGAG 1 cut(s) 6
SgeI CNNG 9 cut(s) 18, 20, 40, 41, 56, 60, 65, 101, 175
SlaI CTCGAG 1 cut(s) 6
SmlI CTYRAG 1 cut(s) 6
SmoI CTYRAG 1 cut(s) 6
Sse9I AATT 2 cut(s) 172, 185
SspMI CTAG 2 cut(s) 48, 193
StyD4I CCNGG 1 cut(s) 27
TaiI ACGT 1 cut(s) 85
TaqI TCGA 1 cut(s) 7
TasI AATT 2 cut(s) 172, 185
TspDTI ATGAA 1 cut(s) 105
XapI RAATTY 1 cut(s) 185
XceI RCATGY 1 cut(s) 56
XhoI CTCGAG 1 cut(s) 6
XspI CTAG 2 cut(s) 48, 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.