Rh1AG155900

Transaldolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0003703
Physical Location & Seq
Reverse (-)
29159914 .. 29165768
5855 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG155900.1

Sequence Viewer

Length: 828 bp
ATGTTTACTTTAGTGCGACATCCTTCTAGAAGCCTTGGCACCAAGGCGAAACAGACTGCGGATGTTGCTTATAGGATCACTGCTAAGGCCTCAGATGTTGCGCATACTATGTATGCTGTTCTTAATTATATATCGGTTATGGTGGTGAAGATAGTGGTCATCAGCCGTATTTTATCTGGGATTTCAGCTGTGAGGAGGTTCATACCAAAAGCTCGCCCAAAGGCTGAAGTTAAACCCGACCCGGAGGAGGAAGAGCAAGCTAGTCATGCTGAAAAGGAGAGGGAGTTGCTTAGACATTTCCATGAACAATCTTTGAGGGCAAAGCTGAAAAACGAAAAGAAAGGTAGAGGCTTTTCTCAACCTTGGTCTAAAGAACAAACTGGATGTTTATACTTGTTTCCTCCAACTGCTGCTACTGTGAGCTCCACCCTACTCTTGGGTATATGCAGTCTCCTTGATAACATATTTAGAAATGCCGTGGATATGGCGCTGGCAGATTCGGAGTGTAACAAGCATGAGAATTCCGAATTGAGATTGTCATGTTTCTGTAACAAGGCTTTAGTCAATGTTGGTGCTGATTTGGCAAAACTAGTTCTTGGCCGAGTGTCCACTGAGGTAGATGCACGTCTTGCTTATGACACGCATGGAATTATAAGGAATCATGGCTCTGTGCATATTCTTCGAGAAAATGCATTTGGTTATAATAAGGTTATTGTGAAGGAGGGGAGACATTTAAGTTCTGCTTCTTGGTTGCTTCTCAGTGAGGCAGCGGTGGATTCTGAGAATGCTGTAGCTGCCGTAAATGTTAGTACTTGGAGCACCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00030 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
TAL_FSA

Protein Analysis

275

Amino Acids

30.41

Weight (kDa)

9.25

Isoelectric Point (pI)

41.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 653, 702
Acc16I TGCGCA 1 cut(s) 102
AccB1I GGYRCC 1 cut(s) 38
AciI CCGC 2 cut(s) 59, 770
AclWI GGATC 1 cut(s) 83
AcoI YGGCCR 1 cut(s) 598
AcsI RAATTY 1 cut(s) 520
AcuI CTGAAG 1 cut(s) 246
AfaI GTAC 1 cut(s) 811
AfiI CCNNNNNNNGG 2 cut(s) 247, 436
AhlI ACTAGT 1 cut(s) 589
AjiI CACGTC 1 cut(s) 626
AjuI GAANNNNNNNTTGG 2 cut(s) 678, 710
AluBI AGCT 6 cut(s) 188, 212, 260, 325, 423, 794
AluI AGCT 6 cut(s) 188, 212, 260, 325, 423, 794
Alw21I GWGCWC 2 cut(s) 425, 821
Alw26I GTCTC 2 cut(s) 455, 721
AlwI GGATC 1 cut(s) 83
AoxI GGCC 2 cut(s) 87, 598
ApeKI GCWGC 3 cut(s) 410, 767, 794
ApoI RAATTY 1 cut(s) 520
AspLEI GCGC 2 cut(s) 103, 490
AsuC2I CCSGG 1 cut(s) 242
AsuHPI GGTGA 1 cut(s) 157
BanI GGYRCC 1 cut(s) 38
BanII GRGCYC 1 cut(s) 425
Bbv12I GWGCWC 2 cut(s) 425, 821
BbvI GCAGC 3 cut(s) 397, 779, 781
BceAI ACGGC 3 cut(s) 150, 461, 782
BcgI CGANNNNNNTGC 2 cut(s) 662, 696
BcnI CCSGG 1 cut(s) 242
BcoDI GTCTC 2 cut(s) 455, 721
BcuI ACTAGT 1 cut(s) 589
BfaI CTAG 3 cut(s) 27, 261, 590
BfmI CTRYAG 1 cut(s) 789
BfoI RGCGCY 1 cut(s) 491
BisI GCNGC 3 cut(s) 411, 768, 795
BlsI GCNGC 3 cut(s) 412, 769, 796
BmcAI AGTACT 1 cut(s) 811
Bme1390I CCNGG 1 cut(s) 242
BmgBI CACGTC 1 cut(s) 626
BmiI GGNNCC 1 cut(s) 40
BmrFI CCNGG 1 cut(s) 242
BmsI GCATC 1 cut(s) 610
Bpu10I CCTNAGC 1 cut(s) 84
BpuMI CCSGG 1 cut(s) 242
BsaJI CCNNGG 4 cut(s) 34, 42, 362, 477
BsaXI ACNNNNNCTCC 2 cut(s) 269, 299
Bsc4I CCNNNNNNNGG 2 cut(s) 247, 436
Bse1I ACTGG 1 cut(s) 385
BseDI CCNNGG 4 cut(s) 34, 42, 362, 477
BseGI GGATG 3 cut(s) 19, 67, 389
BseLI CCNNNNNNNGG 2 cut(s) 247, 436
BseMII CTCAG 4 cut(s) 105, 603, 771, 772
BseNI ACTGG 1 cut(s) 385
BseRI GAGGAG 2 cut(s) 208, 260
BseXI GCAGC 3 cut(s) 397, 779, 781
BshFI GGCC 2 cut(s) 89, 600
BshNI GGYRCC 1 cut(s) 38
BsiHKAI GWGCWC 2 cut(s) 425, 821
BsiSI CCGG 1 cut(s) 242
BslI CCNNNNNNNGG 2 cut(s) 247, 436
BsmAI GTCTC 2 cut(s) 455, 721
BsmI GAATGC 1 cut(s) 790
BsnI GGCC 2 cut(s) 89, 600
Bsp1286I GDGCHC 2 cut(s) 425, 821
Bsp143I GATC 1 cut(s) 75
BspACI CCGC 2 cut(s) 59, 770
BspANI GGCC 2 cut(s) 89, 600
BspCNI CTCAG 4 cut(s) 104, 604, 771, 772
BspLI GGNNCC 1 cut(s) 40
BspPI GGATC 1 cut(s) 83
BspQI GCTCTTC 1 cut(s) 246
BspT107I GGYRCC 1 cut(s) 38
BsrI ACTGG 1 cut(s) 385
BssECI CCNNGG 4 cut(s) 34, 42, 362, 477
BssMI GATC 1 cut(s) 75
BssT1I CCWWGG 3 cut(s) 34, 42, 362
Bst4CI ACNGT 1 cut(s) 418
Bst6I CTCTTC 1 cut(s) 246
BstAPI GCANNNNNTGC 1 cut(s) 629
BstC8I GCNNGC 3 cut(s) 214, 258, 492
BstDEI CTNAG 6 cut(s) 84, 91, 290, 612, 758, 780
BstDSI CCRYGG 1 cut(s) 477
BstF5I GGATG 3 cut(s) 19, 67, 389
BstH2I RGCGCY 1 cut(s) 491
BstHHI GCGC 2 cut(s) 103, 490
BstKTI GATC 1 cut(s) 78
BstMAI GTCTC 2 cut(s) 455, 721
BstMBI GATC 1 cut(s) 75
BstMWI GCNNNNNNNGC 5 cut(s) 65, 266, 581, 629, 794
BstSCI CCNGG 1 cut(s) 240
BstSFI CTRYAG 1 cut(s) 789
BstV1I GCAGC 3 cut(s) 397, 779, 781
BsuRI GGCC 2 cut(s) 89, 600
BtgI CCRYGG 1 cut(s) 477
BtrI CACGTC 1 cut(s) 626
BtsCI GGATG 3 cut(s) 19, 67, 389
BtsI GCAGTG 1 cut(s) 78
BtsIMutI CAGTG 3 cut(s) 78, 609, 766
Cac8I GCNNGC 3 cut(s) 214, 258, 492
CfoI GCGC 2 cut(s) 103, 490
Csp6I GTAC 1 cut(s) 810
CviAII CATG 6 cut(s) 266, 302, 515, 540, 644, 662
CviQI GTAC 1 cut(s) 810
DdeI CTNAG 6 cut(s) 84, 91, 290, 612, 758, 780
DpnI GATC 1 cut(s) 77
DpnII GATC 1 cut(s) 75
EaeI YGGCCR 1 cut(s) 598
Eam1104I CTCTTC 1 cut(s) 246
EarI CTCTTC 1 cut(s) 246
Ecl136II GAGCTC 1 cut(s) 423
Eco130I CCWWGG 3 cut(s) 34, 42, 362
Eco147I AGGCCT 1 cut(s) 89
Eco24I GRGCYC 1 cut(s) 425
Eco53kI GAGCTC 1 cut(s) 423
Eco57I CTGAAG 1 cut(s) 246
EcoICRI GAGCTC 1 cut(s) 423
EcoRI GAATTC 1 cut(s) 520
EcoT14I CCWWGG 3 cut(s) 34, 42, 362
EcoT22I ATGCAT 1 cut(s) 694
EcoT38I GRGCYC 1 cut(s) 425
ErhI CCWWGG 3 cut(s) 34, 42, 362
FaeI CATG 6 cut(s) 269, 305, 518, 543, 647, 665
FalI AAGNNNNNCTT 2 cut(s) 727, 759
FatI CATG 6 cut(s) 265, 301, 514, 539, 643, 661
Fnu4HI GCNGC 3 cut(s) 411, 768, 795
FokI GGATG 3 cut(s) 6, 74, 396
FriOI GRGCYC 1 cut(s) 425
Fsp4HI GCNGC 3 cut(s) 411, 768, 795
FspBI CTAG 3 cut(s) 27, 261, 590
FspI TGCGCA 1 cut(s) 102
GlaI GCGC 2 cut(s) 102, 489
GluI GCNGC 3 cut(s) 411, 768, 795
HaeII RGCGCY 1 cut(s) 491
HaeIII GGCC 2 cut(s) 89, 600
HapII CCGG 1 cut(s) 242
HhaI GCGC 2 cut(s) 103, 490
Hin1II CATG 6 cut(s) 269, 305, 518, 543, 647, 665
Hin6I GCGC 2 cut(s) 101, 488
HinP1I GCGC 2 cut(s) 101, 488
HinfI GANTC 3 cut(s) 497, 658, 776
HpaII CCGG 1 cut(s) 242
HphI GGTGA 1 cut(s) 157
Hpy166II GTNNAC 2 cut(s) 6, 609
Hpy188I TCNGA 4 cut(s) 94, 502, 526, 781
Hpy188III TCNNGA 2 cut(s) 27, 683
Hpy8I GTNNAC 2 cut(s) 6, 609
HpyAV CCTTC 2 cut(s) 33, 712
HpyCH4III ACNGT 1 cut(s) 418
HpyCH4IV ACGT 1 cut(s) 625
HpyCH4V TGCA 4 cut(s) 447, 623, 673, 692
HpyF10VI GCNNNNNNNGC 5 cut(s) 65, 266, 581, 629, 794
HpyF3I CTNAG 6 cut(s) 84, 91, 290, 612, 758, 780
HpySE526I ACGT 1 cut(s) 625
Hsp92II CATG 6 cut(s) 269, 305, 518, 543, 647, 665
HspAI GCGC 2 cut(s) 101, 488
Kzo9I GATC 1 cut(s) 75
LguI GCTCTTC 1 cut(s) 246
LmnI GCTCC 2 cut(s) 428, 816
LpnPI CCDG 4 cut(s) 162, 255, 366, 476
Lsp1109I GCAGC 3 cut(s) 397, 779, 781
LweI GCATC 1 cut(s) 610
MaeI CTAG 3 cut(s) 27, 261, 590
MaeII ACGT 1 cut(s) 625
MaeIII GTNAC 2 cut(s) 506, 548
MalI GATC 1 cut(s) 77
MboI GATC 1 cut(s) 75
MboII GAAGA 3 cut(s) 160, 263, 671
MhlI GDGCHC 2 cut(s) 425, 821
MluCI AATT 4 cut(s) 124, 520, 527, 648
MmeI TCCRAC 1 cut(s) 428
Mph1103I ATGCAT 1 cut(s) 694
MseI TTAA 3 cut(s) 123, 231, 734
MslI CAYNNNNRTG 1 cut(s) 300
MspA1I CMGCKG 2 cut(s) 188, 770
MspI CCGG 1 cut(s) 242
MspR9I CCNGG 1 cut(s) 242
Mva1269I GAATGC 1 cut(s) 790
MwoI GCNNNNNNNGC 5 cut(s) 65, 266, 581, 629, 794
NciI CCSGG 1 cut(s) 242
NdeII GATC 1 cut(s) 75
NlaIII CATG 6 cut(s) 269, 305, 518, 543, 647, 665
NlaIV GGNNCC 1 cut(s) 40
NmeAIII GCCGAG 1 cut(s) 626
NsbI TGCGCA 1 cut(s) 102
NsiI ATGCAT 1 cut(s) 694
PceI AGGCCT 1 cut(s) 89
PciSI GCTCTTC 1 cut(s) 246
PctI GAATGC 1 cut(s) 790
PfeI GAWTC 3 cut(s) 497, 658, 776
PkrI GCNGC 3 cut(s) 412, 769, 796
PsiI TTATAA 2 cut(s) 653, 702
Psp124BI GAGCTC 1 cut(s) 425
PspN4I GGNNCC 1 cut(s) 40
PvuII CAGCTG 1 cut(s) 188
RsaI GTAC 1 cut(s) 811
RsaNI GTAC 1 cut(s) 810
RseI CAYNNNNRTG 1 cut(s) 300
SacI GAGCTC 1 cut(s) 425
SapI GCTCTTC 1 cut(s) 246
SaqAI TTAA 3 cut(s) 123, 231, 734
SatI GCNGC 3 cut(s) 411, 768, 795
Sau3AI GATC 1 cut(s) 75
ScaI AGTACT 1 cut(s) 811
ScrFI CCNGG 1 cut(s) 242
SduI GDGCHC 2 cut(s) 425, 821
SfaNI GCATC 1 cut(s) 610
SfcI CTRYAG 1 cut(s) 789
SmiMI CAYNNNNRTG 1 cut(s) 300
SpeI ACTAGT 1 cut(s) 589
Sse9I AATT 4 cut(s) 124, 520, 527, 648
SseBI AGGCCT 1 cut(s) 89
SsiI CCGC 2 cut(s) 59, 770
SspMI CTAG 3 cut(s) 27, 261, 590
SstI GAGCTC 1 cut(s) 425
StuI AGGCCT 1 cut(s) 89
StyD4I CCNGG 1 cut(s) 240
StyI CCWWGG 3 cut(s) 34, 42, 362
TaaI ACNGT 1 cut(s) 418
TaiI ACGT 1 cut(s) 628
TaqI TCGA 1 cut(s) 682
TasI AATT 4 cut(s) 124, 520, 527, 648
TatI WGTACW 1 cut(s) 809
TfiI GAWTC 3 cut(s) 497, 658, 776
Tru1I TTAA 3 cut(s) 123, 231, 734
Tru9I TTAA 3 cut(s) 123, 231, 734
TscAI CASTG 3 cut(s) 85, 616, 766
TseI GCWGC 3 cut(s) 410, 767, 794
TspDTI ATGAA 2 cut(s) 190, 318
TspRI CASTG 3 cut(s) 85, 616, 766
XapI RAATTY 1 cut(s) 520
XbaI TCTAGA 1 cut(s) 26
XcmI CCANNNNNNNNNTGG 1 cut(s) 433
XspI CTAG 3 cut(s) 27, 261, 590
ZrmI AGTACT 1 cut(s) 811
Zsp2I ATGCAT 1 cut(s) 694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.