Rh4DG099500

Transaldolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0003703
Physical Location & Seq
Reverse (-)
15121929 .. 15123425
1497 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG099500.1

Sequence Viewer

Length: 327 bp
ATGCTGAAAAGGAGAGGGAGTTGCTCAGACATTTCCATGCTTCCTCCAACTGCTGCTACTGTGAGCTCCGCCCTACTCTTGGGTATATGTTGTCTCCCTGATACCATATTTAGAAATGCTGTGGATATGGCGCTGGCAGATTCGAAGTGTAACAAGCATGAGAATTCCGAATTGAGATTGTCATGTTTCTGTAACAAGGCTTCAGTCAATGTTGGTGCTGATTTGGCAAAACTAGTTCTTGGCCGACTGTCCACTGAGGTAGATGCACGTCTTGCTTATGACACGCATGGAATTATAAGGAAGTTACTTTCACAAATGATCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00030 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map01100 map01110 map01120 map01130 map01200 map01230
Pfam Domains
Protein Families
TAL_FSA

Protein Analysis

108

Amino Acids

11.67

Weight (kDa)

8.61

Isoelectric Point (pI)

35.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 296
AciI CCGC 1 cut(s) 69
AcoI YGGCCR 1 cut(s) 241
AcsI RAATTY 1 cut(s) 163
AcuI CTGAAG 1 cut(s) 186
AfiI CCNNNNNNNGG 1 cut(s) 79
AhlI ACTAGT 1 cut(s) 232
AjiI CACGTC 1 cut(s) 269
AluBI AGCT 1 cut(s) 66
AluI AGCT 1 cut(s) 66
Alw21I GWGCWC 1 cut(s) 68
Alw26I GTCTC 1 cut(s) 98
AoxI GGCC 1 cut(s) 241
ApeKI GCWGC 1 cut(s) 53
ApoI RAATTY 1 cut(s) 163
AspLEI GCGC 1 cut(s) 133
AsuII TTCGAA 1 cut(s) 143
BanII GRGCYC 1 cut(s) 68
BarI GAAGNNNNNNTAC 2 cut(s) 184, 216
Bbv12I GWGCWC 1 cut(s) 68
BbvI GCAGC 1 cut(s) 40
BclI TGATCA 1 cut(s) 318
BcoDI GTCTC 1 cut(s) 98
BcuI ACTAGT 1 cut(s) 232
BfaI CTAG 1 cut(s) 233
BfoI RGCGCY 1 cut(s) 134
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
BmgBI CACGTC 1 cut(s) 269
BmsI GCATC 1 cut(s) 253
Bpu14I TTCGAA 1 cut(s) 143
BsaXI ACNNNNNCTCC 1 cut(s) 34
Bsc4I CCNNNNNNNGG 1 cut(s) 79
BseLI CCNNNNNNNGG 1 cut(s) 79
BseMII CTCAG 2 cut(s) 39, 246
BseXI GCAGC 1 cut(s) 40
BshFI GGCC 1 cut(s) 243
BsiHKAI GWGCWC 1 cut(s) 68
BslI CCNNNNNNNGG 1 cut(s) 79
BsmAI GTCTC 1 cut(s) 98
BsnI GGCC 1 cut(s) 243
Bsp119I TTCGAA 1 cut(s) 143
Bsp1286I GDGCHC 1 cut(s) 68
Bsp143I GATC 1 cut(s) 318
BspACI CCGC 1 cut(s) 69
BspANI GGCC 1 cut(s) 243
BspCNI CTCAG 2 cut(s) 38, 247
BspT104I TTCGAA 1 cut(s) 143
BssMI GATC 1 cut(s) 318
Bst4CI ACNGT 2 cut(s) 61, 249
BstAPI GCANNNNNTGC 1 cut(s) 272
BstBI TTCGAA 1 cut(s) 143
BstC8I GCNNGC 1 cut(s) 135
BstDEI CTNAG 2 cut(s) 25, 255
BstH2I RGCGCY 1 cut(s) 134
BstHHI GCGC 1 cut(s) 133
BstKTI GATC 1 cut(s) 321
BstMAI GTCTC 1 cut(s) 98
BstMBI GATC 1 cut(s) 318
BstMWI GCNNNNNNNGC 2 cut(s) 224, 272
BstV1I GCAGC 1 cut(s) 40
BsuRI GGCC 1 cut(s) 243
BtrI CACGTC 1 cut(s) 269
BtsIMutI CAGTG 1 cut(s) 252
Cac8I GCNNGC 1 cut(s) 135
CfoI GCGC 1 cut(s) 133
CviAII CATG 4 cut(s) 37, 158, 183, 287
CviJI RGCY 3 cut(s) 66, 200, 243
CviKI_1 RGCY 3 cut(s) 66, 200, 243
DdeI CTNAG 2 cut(s) 25, 255
DpnI GATC 1 cut(s) 320
DpnII GATC 1 cut(s) 318
EaeI YGGCCR 1 cut(s) 241
EciI GGCGGA 1 cut(s) 58
Ecl136II GAGCTC 1 cut(s) 66
Eco24I GRGCYC 1 cut(s) 68
Eco53kI GAGCTC 1 cut(s) 66
Eco57I CTGAAG 1 cut(s) 186
EcoICRI GAGCTC 1 cut(s) 66
EcoRI GAATTC 1 cut(s) 163
EcoT38I GRGCYC 1 cut(s) 68
FaeI CATG 4 cut(s) 40, 161, 186, 290
FatI CATG 4 cut(s) 36, 157, 182, 286
FbaI TGATCA 1 cut(s) 318
Fnu4HI GCNGC 1 cut(s) 54
FriOI GRGCYC 1 cut(s) 68
Fsp4HI GCNGC 1 cut(s) 54
FspBI CTAG 1 cut(s) 233
GlaI GCGC 1 cut(s) 132
GluI GCNGC 1 cut(s) 54
HaeII RGCGCY 1 cut(s) 134
HaeIII GGCC 1 cut(s) 243
HhaI GCGC 1 cut(s) 133
Hin1II CATG 4 cut(s) 40, 161, 186, 290
Hin6I GCGC 1 cut(s) 131
HinP1I GCGC 1 cut(s) 131
HinfI GANTC 1 cut(s) 140
Hpy166II GTNNAC 1 cut(s) 252
Hpy188I TCNGA 2 cut(s) 28, 169
Hpy8I GTNNAC 1 cut(s) 252
HpyCH4III ACNGT 2 cut(s) 61, 249
HpyCH4IV ACGT 1 cut(s) 268
HpyCH4V TGCA 1 cut(s) 266
HpyF10VI GCNNNNNNNGC 2 cut(s) 224, 272
HpyF3I CTNAG 2 cut(s) 25, 255
HpySE526I ACGT 1 cut(s) 268
Hsp92II CATG 4 cut(s) 40, 161, 186, 290
HspAI GCGC 1 cut(s) 131
Ksp22I TGATCA 1 cut(s) 318
Kzo9I GATC 1 cut(s) 318
LmnI GCTCC 1 cut(s) 71
LpnPI CCDG 2 cut(s) 111, 119
Lsp1109I GCAGC 1 cut(s) 40
LweI GCATC 1 cut(s) 253
MaeI CTAG 1 cut(s) 233
MaeII ACGT 1 cut(s) 268
MaeIII GTNAC 3 cut(s) 149, 191, 303
MalI GATC 1 cut(s) 320
MboI GATC 1 cut(s) 318
MhlI GDGCHC 1 cut(s) 68
MluCI AATT 3 cut(s) 163, 170, 291
MmeI TCCRAC 1 cut(s) 71
MnlI CCTC 3 cut(s) 8, 54, 250
MslI CAYNNNNRTG 1 cut(s) 35
MwoI GCNNNNNNNGC 2 cut(s) 224, 272
NdeII GATC 1 cut(s) 318
NlaIII CATG 4 cut(s) 40, 161, 186, 290
NspV TTCGAA 1 cut(s) 143
PfeI GAWTC 1 cut(s) 140
PkrI GCNGC 1 cut(s) 55
PsiI TTATAA 1 cut(s) 296
Psp124BI GAGCTC 1 cut(s) 68
RseI CAYNNNNRTG 1 cut(s) 35
SacI GAGCTC 1 cut(s) 68
SatI GCNGC 1 cut(s) 54
Sau3AI GATC 1 cut(s) 318
SduI GDGCHC 1 cut(s) 68
SetI ASST 3 cut(s) 68, 261, 271
SfaNI GCATC 1 cut(s) 253
SfuI TTCGAA 1 cut(s) 143
SmiMI CAYNNNNRTG 1 cut(s) 35
SpeI ACTAGT 1 cut(s) 232
Sse9I AATT 3 cut(s) 163, 170, 291
SsiI CCGC 1 cut(s) 69
SspMI CTAG 1 cut(s) 233
SstI GAGCTC 1 cut(s) 68
TaaI ACNGT 2 cut(s) 61, 249
TaiI ACGT 1 cut(s) 271
TaqI TCGA 1 cut(s) 143
TasI AATT 3 cut(s) 163, 170, 291
TfiI GAWTC 1 cut(s) 140
TscAI CASTG 1 cut(s) 259
TseI GCWGC 1 cut(s) 53
TspRI CASTG 1 cut(s) 259
XapI RAATTY 1 cut(s) 163
XspI CTAG 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.