RchiOBHm_Chr6g0290071

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001790
Physical Location & Seq
Reverse (-)
53181983 .. 53182450
468 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26023

Sequence Viewer

Length: 468 bp
ATGTACATAGGGTCATTGCCGCCAGAAGTGTCGACAGAGAAGAAAAGCCCTGAGATGGAAAAGAAGGAAACACCGATATTGATTGCTGCAAAGAATGGCGAGACTGAAATGGTCGAGAAGATCCTAGACCTTTTTCCAGTGGCCATACATGACCTTAATGCACAGAAAAAGAATATAGTTCTGGTGGCTGTGGAGCACAGGCAACCCTATGTGTATCAACTCTTGCTAAAGAGAAAGATCATGAAAGAAAGCATTTTCTGCAAAGTGGATAATGATGGCAATAGTGCATTACACCTTGCAGCAAAGTTGGGGGATTACAAGCCTTGGCTAATTCCCGGTGCTGCCTTGCAAATGCAATGGGAATTCGAGTGGTATGAGGTAACAAGTATTCAAACCGATCTTTCGTACGGTCTTCATTATTCTGTGTTTTTATTATCTCACTTGTTCGAAATAATAAAATGCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000149 GO:0000166 GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005886 GO:0006417 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006888 GO:0006900 GO:0006901 GO:0006903 GO:0006915 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0006996 GO:0007154 GO:0007165 GO:0007166 GO:0008144 GO:0008150 GO:0008152 GO:0008219 GO:0008625 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010469 GO:0010506 GO:0010508 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0010646 GO:0010648 GO:0010941 GO:0010942 GO:0010950 GO:0010952 GO:0012501 GO:0015629 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017075 GO:0017076 GO:0017148 GO:0019222 GO:0019538 GO:0019905 GO:0022607 GO:0022898 GO:0023051 GO:0023052 GO:0023057 GO:0030162 GO:0030554 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0032270 GO:0032409 GO:0032412 GO:0032553 GO:0032555 GO:0032559 GO:0032879 GO:0033194 GO:0033554 GO:0034097 GO:0034248 GO:0034249 GO:0034341 GO:0034599 GO:0034762 GO:0034765 GO:0035556 GO:0035639 GO:0036094 GO:0036211 GO:0042221 GO:0042802 GO:0042981 GO:0043065 GO:0043066 GO:0043067 GO:0043068 GO:0043069 GO:0043085 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043269 GO:0043280 GO:0043281 GO:0043412 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045862 GO:0046777 GO:0046907 GO:0048193 GO:0048194 GO:0048199 GO:0048207 GO:0048208 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051049 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051248 GO:0051336 GO:0051345 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0060548 GO:0061024 GO:0065003 GO:0065007 GO:0065009 GO:0070887 GO:0071310 GO:0071345 GO:0071346 GO:0071447 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090114 GO:0097159 GO:0097190 GO:0097191 GO:0097367 GO:0099601 GO:0140096 GO:1900449 GO:1901265 GO:1901363 GO:1901564 GO:1901700 GO:1901701 GO:1902041 GO:1902042 GO:1904062 GO:2000112 GO:2000113 GO:2000116 GO:2000310 GO:2001056 GO:2001233 GO:2001234 GO:2001236 GO:2001237 GO:2001257
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 PGG

Protein Analysis

155

Amino Acids

17.84

Weight (kDa)

5.95

Isoelectric Point (pI)

30.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 32
AciI CCGC 1 cut(s) 20
AclWI GGATC 1 cut(s) 115
AcoI YGGCCR 1 cut(s) 141
AcsI RAATTY 1 cut(s) 362
AfaI GTAC 2 cut(s) 5, 407
AfiI CCNNNNNNNGG 1 cut(s) 55
AgsI TTSAA 1 cut(s) 392
Alw21I GWGCWC 1 cut(s) 198
Alw26I GTCTC 1 cut(s) 95
AlwI GGATC 1 cut(s) 115
AoxI GGCC 1 cut(s) 141
ApeKI GCWGC 3 cut(s) 86, 299, 341
ApoI RAATTY 1 cut(s) 362
AsuC2I CCSGG 1 cut(s) 336
AsuII TTCGAA 1 cut(s) 447
BalI TGGCCA 1 cut(s) 143
BbsI GAAGAC 1 cut(s) 404
Bbv12I GWGCWC 1 cut(s) 198
BbvI GCAGC 3 cut(s) 73, 311, 328
BccI CCATC 2 cut(s) 49, 269
BcnI CCSGG 1 cut(s) 336
BcoDI GTCTC 1 cut(s) 95
BfaI CTAG 1 cut(s) 125
BisI GCNGC 4 cut(s) 20, 87, 300, 342
BlsI GCNGC 4 cut(s) 21, 88, 301, 343
Bme1390I CCNGG 1 cut(s) 336
BmrFI CCNGG 1 cut(s) 336
BpiI GAAGAC 1 cut(s) 404
Bpu14I TTCGAA 1 cut(s) 447
BpuMI CCSGG 1 cut(s) 336
BsaJI CCNNGG 1 cut(s) 323
Bsc4I CCNNNNNNNGG 1 cut(s) 55
Bse1I ACTGG 1 cut(s) 137
Bse3DI GCAATG 2 cut(s) 14, 362
BseDI CCNNGG 1 cut(s) 323
BseLI CCNNNNNNNGG 1 cut(s) 55
BseMI GCAATG 2 cut(s) 14, 362
BseMII CTCAG 1 cut(s) 42
BseNI ACTGG 1 cut(s) 137
BseXI GCAGC 3 cut(s) 73, 311, 328
BshFI GGCC 1 cut(s) 143
BsiHKAI GWGCWC 1 cut(s) 198
BsiSI CCGG 1 cut(s) 336
BsiWI CGTACG 1 cut(s) 405
BslI CCNNNNNNNGG 1 cut(s) 55
BsmAI GTCTC 1 cut(s) 95
BsnI GGCC 1 cut(s) 143
Bsp119I TTCGAA 1 cut(s) 447
Bsp1286I GDGCHC 1 cut(s) 198
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 3 cut(s) 120, 237, 397
BspACI CCGC 1 cut(s) 20
BspANI GGCC 1 cut(s) 143
BspCNI CTCAG 1 cut(s) 43
BspHI TCATGA 1 cut(s) 240
BspPI GGATC 1 cut(s) 115
BspT104I TTCGAA 1 cut(s) 447
BsrDI GCAATG 2 cut(s) 14, 362
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 1 cut(s) 137
BssECI CCNNGG 1 cut(s) 323
BssMI GATC 3 cut(s) 120, 237, 397
BssT1I CCWWGG 1 cut(s) 323
Bst4CI ACNGT 1 cut(s) 410
BstAPI GCANNNNNTGC 1 cut(s) 258
BstAUI TGTACA 1 cut(s) 3
BstBI TTCGAA 1 cut(s) 447
BstDEI CTNAG 1 cut(s) 51
BstKTI GATC 3 cut(s) 123, 240, 400
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 3 cut(s) 120, 237, 397
BstMWI GCNNNNNNNGC 1 cut(s) 258
BstSCI CCNGG 1 cut(s) 334
BstV1I GCAGC 3 cut(s) 73, 311, 328
BstV2I GAAGAC 1 cut(s) 404
BstX2I RGATCY 1 cut(s) 120
BstYI RGATCY 1 cut(s) 120
BsuRI GGCC 1 cut(s) 143
BtsIMutI CAGTG 1 cut(s) 144
CciI TCATGA 1 cut(s) 240
Csp6I GTAC 2 cut(s) 4, 406
CviAII CATG 2 cut(s) 149, 241
CviJI RGCY 5 cut(s) 48, 143, 188, 322, 328
CviKI_1 RGCY 5 cut(s) 48, 143, 188, 322, 328
CviQI GTAC 2 cut(s) 4, 406
DdeI CTNAG 1 cut(s) 51
DpnI GATC 3 cut(s) 122, 239, 399
DpnII GATC 3 cut(s) 120, 237, 397
EaeI YGGCCR 1 cut(s) 141
Eco130I CCWWGG 1 cut(s) 323
EcoRI GAATTC 1 cut(s) 362
EcoT14I CCWWGG 1 cut(s) 323
ErhI CCWWGG 1 cut(s) 323
FaeI CATG 2 cut(s) 152, 244
FaiI YATR 7 cut(s) 8, 146, 150, 176, 210, 242, 375
FatI CATG 2 cut(s) 148, 240
FblI GTMKAC 1 cut(s) 32
Fnu4HI GCNGC 4 cut(s) 20, 87, 300, 342
Fsp4HI GCNGC 4 cut(s) 20, 87, 300, 342
FspBI CTAG 1 cut(s) 125
GluI GCNGC 4 cut(s) 20, 87, 300, 342
HaeIII GGCC 1 cut(s) 143
HapII CCGG 1 cut(s) 336
Hin1II CATG 2 cut(s) 152, 244
HincII GTYRAC 1 cut(s) 33
HindII GTYRAC 1 cut(s) 33
HpaII CCGG 1 cut(s) 336
Hpy166II GTNNAC 1 cut(s) 33
Hpy188III TCNNGA 2 cut(s) 115, 241
Hpy8I GTNNAC 1 cut(s) 33
HpyAV CCTTC 1 cut(s) 58
HpyCH4III ACNGT 1 cut(s) 410
HpyCH4V TGCA 7 cut(s) 89, 161, 261, 287, 299, 349, 355
HpyF10VI GCNNNNNNNGC 1 cut(s) 258
HpyF3I CTNAG 1 cut(s) 51
Hsp92II CATG 2 cut(s) 152, 244
Kzo9I GATC 3 cut(s) 120, 237, 397
LmnI GCTCC 1 cut(s) 193
LpnPI CCDG 6 cut(s) 36, 63, 150, 167, 184, 349
Lsp1109I GCAGC 3 cut(s) 73, 311, 328
MaeI CTAG 1 cut(s) 125
MaeIII GTNAC 1 cut(s) 379
MalI GATC 3 cut(s) 122, 239, 399
MboI GATC 3 cut(s) 120, 237, 397
MboII GAAGA 3 cut(s) 52, 130, 404
MflI RGATCY 1 cut(s) 120
MhlI GDGCHC 1 cut(s) 198
MlsI TGGCCA 1 cut(s) 143
MluCI AATT 2 cut(s) 330, 362
MluNI TGGCCA 1 cut(s) 143
MnlI CCTC 1 cut(s) 370
Mox20I TGGCCA 1 cut(s) 143
MscI TGGCCA 1 cut(s) 143
MseI TTAA 1 cut(s) 156
Msp20I TGGCCA 1 cut(s) 143
MspI CCGG 1 cut(s) 336
MspR9I CCNGG 1 cut(s) 336
MwoI GCNNNNNNNGC 1 cut(s) 258
NciI CCSGG 1 cut(s) 336
NdeII GATC 3 cut(s) 120, 237, 397
NlaIII CATG 2 cut(s) 152, 244
NspV TTCGAA 1 cut(s) 447
PagI TCATGA 1 cut(s) 240
Pfl23II CGTACG 1 cut(s) 405
PkrI GCNGC 4 cut(s) 21, 88, 301, 343
PspLI CGTACG 1 cut(s) 405
PsuI RGATCY 1 cut(s) 120
RsaI GTAC 2 cut(s) 5, 407
RsaNI GTAC 2 cut(s) 4, 406
SalI GTCGAC 1 cut(s) 31
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 4 cut(s) 20, 87, 300, 342
Sau3AI GATC 3 cut(s) 120, 237, 397
ScrFI CCNGG 1 cut(s) 336
SduI GDGCHC 1 cut(s) 198
SetI ASST 4 cut(s) 132, 156, 297, 381
SfuI TTCGAA 1 cut(s) 447
Sse9I AATT 2 cut(s) 330, 362
SsiI CCGC 1 cut(s) 20
SspMI CTAG 1 cut(s) 125
StyD4I CCNGG 1 cut(s) 334
StyI CCWWGG 1 cut(s) 323
TaaI ACNGT 1 cut(s) 410
TaqI TCGA 4 cut(s) 32, 114, 366, 447
TasI AATT 2 cut(s) 330, 362
TatI WGTACW 1 cut(s) 3
TauI GCSGC 1 cut(s) 22
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TscAI CASTG 1 cut(s) 144
TseI GCWGC 3 cut(s) 86, 299, 341
TspDTI ATGAA 2 cut(s) 257, 404
TspRI CASTG 1 cut(s) 144
XapI RAATTY 1 cut(s) 362
XmiI GTMKAC 1 cut(s) 32
XspI CTAG 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.