Rh4DG311500

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0001790
Physical Location & Seq
Forward (+)
53405782 .. 53413874
8093 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG311500.1

Sequence Viewer

Length: 531 bp
ATGAACTCTATGAATCAAAATGGTTCGTCTCCACTGCATATTCTAGCTAGTAAGCCCAATGCATTCAAAAGCAGCTGTCGACTTGGACTCTGTGATCTTCTTATATACAAATGTTTGATGGTTGAAGAACTCGAAGTGGAAGAATATAACCATGAAGCGTGTCATTCTAAGGCAGGAGACGGAGACAGTTCTTCATACCCAAAAAACTACGAAACATGCATGAACTTCTTCCAAGTTCTCATAAGTTTGTTTCAAGTGTTAAGTAAAAAGAGGGGAGATAGGAACTATATGCAAGTGTGGCACGAATACTGGCATAAGACACACAGCTCCCTCTTTCAAGCTAATGGAGGAAATGGAAAGGGTACTAATGGTCCTGCCGACAACGAAGAGAATCCGCAAAAAGCATCGGCGGCCAGCGTCATGATATCCCCGACAGACCTGACATTCACGGCGGAGCTAACAACCGGCGGTCATGTGTTGAGATCAGTTGTGAAGGTCGAACAGTGGTCAGCGGTTAAAGGTGTGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001508 GO:0002027 GO:0003008 GO:0003012 GO:0003013 GO:0003015 GO:0003205 GO:0003230 GO:0003279 GO:0003283 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006873 GO:0006874 GO:0006875 GO:0006888 GO:0006928 GO:0006936 GO:0006937 GO:0006941 GO:0006942 GO:0007009 GO:0007154 GO:0007165 GO:0007267 GO:0007275 GO:0007507 GO:0008015 GO:0008016 GO:0008092 GO:0008104 GO:0008150 GO:0009893 GO:0009987 GO:0010256 GO:0010468 GO:0010522 GO:0010604 GO:0010628 GO:0010646 GO:0010880 GO:0010881 GO:0010882 GO:0010959 GO:0014704 GO:0016020 GO:0016043 GO:0016192 GO:0016323 GO:0019222 GO:0019722 GO:0019725 GO:0019899 GO:0019900 GO:0019901 GO:0019932 GO:0022898 GO:0023051 GO:0023052 GO:0030001 GO:0030003 GO:0030016 GO:0030017 GO:0030018 GO:0030029 GO:0030048 GO:0030054 GO:0030154 GO:0030315 GO:0030507 GO:0030674 GO:0031430 GO:0031647 GO:0031672 GO:0031674 GO:0032409 GO:0032411 GO:0032412 GO:0032414 GO:0032501 GO:0032502 GO:0032879 GO:0032970 GO:0033036 GO:0033292 GO:0033365 GO:0034394 GO:0034613 GO:0034762 GO:0034764 GO:0034765 GO:0034767 GO:0035556 GO:0035637 GO:0036309 GO:0036371 GO:0042383 GO:0042391 GO:0042592 GO:0042692 GO:0043034 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043266 GO:0043268 GO:0043269 GO:0043270 GO:0043292 GO:0044057 GO:0044093 GO:0044291 GO:0044325 GO:0044422 GO:0044424 GO:0044425 GO:0044444 GO:0044449 GO:0044459 GO:0044464 GO:0046907 GO:0048193 GO:0048468 GO:0048513 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050821 GO:0050896 GO:0051049 GO:0051050 GO:0051117 GO:0051179 GO:0051234 GO:0051239 GO:0051270 GO:0051279 GO:0051282 GO:0051641 GO:0051649 GO:0051716 GO:0051899 GO:0051924 GO:0051928 GO:0055001 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0055117 GO:0060047 GO:0060048 GO:0060090 GO:0060255 GO:0060306 GO:0060307 GO:0060341 GO:0061024 GO:0061061 GO:0061337 GO:0065007 GO:0065008 GO:0065009 GO:0070252 GO:0070296 GO:0070727 GO:0070838 GO:0070972 GO:0071840 GO:0071944 GO:0072359 GO:0072503 GO:0072507 GO:0072511 GO:0072657 GO:0072659 GO:0086001 GO:0086002 GO:0086003 GO:0086004 GO:0086005 GO:0086010 GO:0086012 GO:0086014 GO:0086015 GO:0086018 GO:0086019 GO:0086026 GO:0086046 GO:0086065 GO:0086066 GO:0086070 GO:0086091 GO:0090257 GO:0098590 GO:0098771 GO:0098900 GO:0098901 GO:0098907 GO:0098910 GO:0099080 GO:0099081 GO:0099512 GO:0099623 GO:1901016 GO:1901018 GO:1901019 GO:1901021 GO:1901379 GO:1901381 GO:1903115 GO:1903169 GO:1903522 GO:1903779 GO:1904062 GO:1904064 GO:1904427 GO:1990778 GO:2001257 GO:2001259
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 PGG

Protein Analysis

176

Amino Acids

19.45

Weight (kDa)

6.37

Isoelectric Point (pI)

44.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 79
AciI CCGC 5 cut(s) 395, 410, 452, 468, 512
AcoI YGGCCR 1 cut(s) 411
AfaI GTAC 1 cut(s) 364
AgsI TTSAA 4 cut(s) 67, 125, 254, 338
AluBI AGCT 5 cut(s) 47, 75, 327, 341, 457
AluI AGCT 5 cut(s) 47, 75, 327, 341, 457
Alw26I GTCTC 3 cut(s) 33, 171, 177
AoxI GGCC 1 cut(s) 411
ApeKI GCWGC 1 cut(s) 72
Asp700I GAANNNNTTC 1 cut(s) 227
AspS9I GGNCC 1 cut(s) 371
AvaII GGWCC 1 cut(s) 371
BbvI GCAGC 1 cut(s) 84
BccI CCATC 1 cut(s) 112
BceAI ACGGC 1 cut(s) 465
BcoDI GTCTC 3 cut(s) 33, 171, 177
BfaI CTAG 2 cut(s) 44, 48
BisI GCNGC 2 cut(s) 73, 411
BlsI GCNGC 2 cut(s) 74, 412
Bme18I GGWCC 1 cut(s) 371
BmgT120I GGNCC 1 cut(s) 371
BmsI GCATC 1 cut(s) 413
Bse118I RCCGGY 1 cut(s) 464
Bse1I ACTGG 1 cut(s) 314
BseNI ACTGG 1 cut(s) 314
BseXI GCAGC 1 cut(s) 84
BshFI GGCC 1 cut(s) 413
BsiSI CCGG 1 cut(s) 465
BsmAI GTCTC 3 cut(s) 33, 171, 177
BsmBI CGTCTC 2 cut(s) 33, 171
BsmI GAATGC 1 cut(s) 62
BsnI GGCC 1 cut(s) 413
Bsp143I GATC 2 cut(s) 94, 482
BspACI CCGC 5 cut(s) 395, 410, 452, 468, 512
BspANI GGCC 1 cut(s) 413
BspHI TCATGA 1 cut(s) 420
BsrFI RCCGGY 1 cut(s) 464
BsrI ACTGG 1 cut(s) 314
BssAI RCCGGY 1 cut(s) 464
BssMI GATC 2 cut(s) 94, 482
Bst4CI ACNGT 2 cut(s) 188, 504
Bst6I CTCTTC 1 cut(s) 381
BstC8I GCNNGC 1 cut(s) 415
BstDEI CTNAG 1 cut(s) 168
BstKTI GATC 2 cut(s) 97, 485
BstMAI GTCTC 3 cut(s) 33, 171, 177
BstMBI GATC 2 cut(s) 94, 482
BstMWI GCNNNNNNNGC 2 cut(s) 298, 410
BstNSI RCATGY 1 cut(s) 219
BstV1I GCAGC 1 cut(s) 84
BsuRI GGCC 1 cut(s) 413
BtsI GCAGTG 1 cut(s) 32
BtsIMutI CAGTG 2 cut(s) 32, 509
Cac8I GCNNGC 1 cut(s) 415
CciI TCATGA 1 cut(s) 420
Cfr10I RCCGGY 1 cut(s) 464
Cfr13I GGNCC 1 cut(s) 371
CseI GACGC 1 cut(s) 406
Csp6I GTAC 1 cut(s) 363
CviAII CATG 5 cut(s) 152, 216, 220, 421, 473
CviJI RGCY 7 cut(s) 47, 55, 75, 327, 341, 413, 457
CviKI_1 RGCY 7 cut(s) 47, 55, 75, 327, 341, 413, 457
CviQI GTAC 1 cut(s) 363
DdeI CTNAG 1 cut(s) 168
DpnI GATC 2 cut(s) 96, 484
DpnII GATC 2 cut(s) 94, 482
EaeI YGGCCR 1 cut(s) 411
Eam1104I CTCTTC 1 cut(s) 381
EarI CTCTTC 1 cut(s) 381
EciI GGCGGA 1 cut(s) 467
Eco32I GATATC 1 cut(s) 426
Eco47I GGWCC 1 cut(s) 371
EcoRV GATATC 1 cut(s) 426
EcoT22I ATGCAT 2 cut(s) 64, 221
Esp3I CGTCTC 2 cut(s) 33, 171
FaeI CATG 5 cut(s) 155, 219, 223, 424, 476
FatI CATG 5 cut(s) 151, 215, 219, 420, 472
FblI GTMKAC 1 cut(s) 79
Fnu4HI GCNGC 2 cut(s) 73, 411
Fsp4HI GCNGC 2 cut(s) 73, 411
FspBI CTAG 2 cut(s) 44, 48
GluI GCNGC 2 cut(s) 73, 411
HaeIII GGCC 1 cut(s) 413
HapII CCGG 1 cut(s) 465
HgaI GACGC 1 cut(s) 406
Hin1II CATG 5 cut(s) 155, 219, 223, 424, 476
HincII GTYRAC 1 cut(s) 80
HindII GTYRAC 1 cut(s) 80
HinfI GANTC 3 cut(s) 13, 87, 391
HpaII CCGG 1 cut(s) 465
Hpy166II GTNNAC 1 cut(s) 80
Hpy188III TCNNGA 1 cut(s) 421
Hpy8I GTNNAC 1 cut(s) 80
HpyAV CCTTC 1 cut(s) 487
HpyCH4III ACNGT 2 cut(s) 188, 504
HpyCH4V TGCA 4 cut(s) 37, 62, 219, 292
HpyF10VI GCNNNNNNNGC 2 cut(s) 298, 410
HpyF3I CTNAG 1 cut(s) 168
Hsp92II CATG 5 cut(s) 155, 219, 223, 424, 476
Kzo9I GATC 2 cut(s) 94, 482
LmnI GCTCC 2 cut(s) 332, 454
LpnPI CCDG 6 cut(s) 159, 295, 387, 427, 452, 478
Lsp1109I GCAGC 1 cut(s) 84
LweI GCATC 1 cut(s) 413
MaeI CTAG 2 cut(s) 44, 48
MalI GATC 2 cut(s) 96, 484
MboI GATC 2 cut(s) 94, 482
MboII GAAGA 6 cut(s) 89, 137, 152, 183, 220, 398
MlyI GAGTC 1 cut(s) 81
MnlI CCTC 3 cut(s) 264, 341, 341
Mph1103I ATGCAT 2 cut(s) 64, 221
MroXI GAANNNNTTC 1 cut(s) 227
MseI TTAA 2 cut(s) 260, 516
MspA1I CMGCKG 2 cut(s) 75, 512
MspI CCGG 1 cut(s) 465
Mva1269I GAATGC 1 cut(s) 62
MwoI GCNNNNNNNGC 2 cut(s) 298, 410
NdeII GATC 2 cut(s) 94, 482
NlaIII CATG 5 cut(s) 155, 219, 223, 424, 476
NsiI ATGCAT 2 cut(s) 64, 221
NspI RCATGY 1 cut(s) 219
PagI TCATGA 1 cut(s) 420
PctI GAATGC 1 cut(s) 62
PdmI GAANNNNTTC 1 cut(s) 227
PfeI GAWTC 2 cut(s) 13, 391
PkrI GCNGC 2 cut(s) 74, 412
PleI GAGTC 1 cut(s) 81
PpsI GAGTC 1 cut(s) 81
PspPI GGNCC 1 cut(s) 371
PvuII CAGCTG 1 cut(s) 75
RsaI GTAC 1 cut(s) 364
RsaNI GTAC 1 cut(s) 363
SalI GTCGAC 1 cut(s) 78
SaqAI TTAA 2 cut(s) 260, 516
SatI GCNGC 2 cut(s) 73, 411
Sau3AI GATC 2 cut(s) 94, 482
Sau96I GGNCC 1 cut(s) 371
SchI GAGTC 1 cut(s) 81
SetI ASST 8 cut(s) 49, 77, 329, 343, 441, 459, 498, 523
SfaNI GCATC 1 cut(s) 413
SinI GGWCC 1 cut(s) 371
SsiI CCGC 5 cut(s) 395, 410, 452, 468, 512
SspMI CTAG 2 cut(s) 44, 48
TaaI ACNGT 2 cut(s) 188, 504
TaqI TCGA 3 cut(s) 79, 132, 498
TauI GCSGC 1 cut(s) 413
TfiI GAWTC 2 cut(s) 13, 391
Tru1I TTAA 2 cut(s) 260, 516
Tru9I TTAA 2 cut(s) 260, 516
TscAI CASTG 2 cut(s) 39, 509
TseI GCWGC 1 cut(s) 72
TspDTI ATGAA 5 cut(s) 17, 26, 168, 183, 236
TspGWI ACGGA 1 cut(s) 195
TspRI CASTG 2 cut(s) 39, 509
VpaK11BI GGWCC 1 cut(s) 371
XceI RCATGY 1 cut(s) 219
XmiI GTMKAC 1 cut(s) 79
XmnI GAANNNNTTC 1 cut(s) 227
XspI CTAG 2 cut(s) 44, 48
Zsp2I ATGCAT 2 cut(s) 64, 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.