Rmu_sc0007671.1_g000020

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007671.1
OG0001790
Physical Location & Seq
Forward (+)
91919 .. 92443
525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007671.1_g000020.1.cds

Sequence Viewer

Length: 525 bp
atggcttcagatgaggaaatagatagcttgttcgaaaacacgatgaaaggacaatgggaaaaggtcatggaggcctacagaaatagtattacagctcaagtagccaagataaccagatccaaggagactgctctgcacatagctatagcagatggccgaaccgaaatcgtcctagagttggtgaacattattttccatactgaagacggcagtgcatcaaccgtagtactcagcatagcaaatgatagaggcaacacgcctctacatctagctgcttggctcgggaatgtacaagtgtgccacagcattgcagccaaggcggcaagcctcatctccgttcgaaatgtggagggcgagacacctctgttcttggcagcccttaagggtaacacaaaggcttttctttgcctaaattttcattgccaagaaaaaccccattcctcgatcagagacaacaatggtgataccattcttcatgctgcaatctccagtgaatacttcagtaagtgcaactcctacatctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001508 GO:0002027 GO:0003008 GO:0003012 GO:0003013 GO:0003015 GO:0003205 GO:0003230 GO:0003279 GO:0003283 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006873 GO:0006874 GO:0006875 GO:0006888 GO:0006928 GO:0006936 GO:0006937 GO:0006941 GO:0006942 GO:0007009 GO:0007154 GO:0007165 GO:0007267 GO:0007275 GO:0007507 GO:0008015 GO:0008016 GO:0008092 GO:0008104 GO:0008150 GO:0009893 GO:0009987 GO:0010256 GO:0010468 GO:0010522 GO:0010604 GO:0010628 GO:0010646 GO:0010880 GO:0010881 GO:0010882 GO:0010959 GO:0014704 GO:0016020 GO:0016043 GO:0016192 GO:0016323 GO:0019222 GO:0019722 GO:0019725 GO:0019899 GO:0019900 GO:0019901 GO:0019932 GO:0022898 GO:0023051 GO:0023052 GO:0030001 GO:0030003 GO:0030016 GO:0030017 GO:0030018 GO:0030029 GO:0030048 GO:0030054 GO:0030154 GO:0030315 GO:0030507 GO:0030674 GO:0031430 GO:0031647 GO:0031672 GO:0031674 GO:0032409 GO:0032411 GO:0032412 GO:0032414 GO:0032501 GO:0032502 GO:0032879 GO:0032970 GO:0033036 GO:0033292 GO:0033365 GO:0034394 GO:0034613 GO:0034762 GO:0034764 GO:0034765 GO:0034767 GO:0035556 GO:0035637 GO:0036309 GO:0036371 GO:0042383 GO:0042391 GO:0042592 GO:0042692 GO:0043034 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043266 GO:0043268 GO:0043269 GO:0043270 GO:0043292 GO:0044057 GO:0044093 GO:0044291 GO:0044325 GO:0044422 GO:0044424 GO:0044425 GO:0044444 GO:0044449 GO:0044459 GO:0044464 GO:0046907 GO:0048193 GO:0048468 GO:0048513 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050821 GO:0050896 GO:0051049 GO:0051050 GO:0051117 GO:0051179 GO:0051234 GO:0051239 GO:0051270 GO:0051279 GO:0051282 GO:0051641 GO:0051649 GO:0051716 GO:0051899 GO:0051924 GO:0051928 GO:0055001 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0055117 GO:0060047 GO:0060048 GO:0060090 GO:0060255 GO:0060306 GO:0060307 GO:0060341 GO:0061024 GO:0061061 GO:0061337 GO:0065007 GO:0065008 GO:0065009 GO:0070252 GO:0070296 GO:0070727 GO:0070838 GO:0070972 GO:0071840 GO:0071944 GO:0072359 GO:0072503 GO:0072507 GO:0072511 GO:0072657 GO:0072659 GO:0086001 GO:0086002 GO:0086003 GO:0086004 GO:0086005 GO:0086010 GO:0086012 GO:0086014 GO:0086015 GO:0086018 GO:0086019 GO:0086026 GO:0086046 GO:0086065 GO:0086066 GO:0086070 GO:0086091 GO:0090257 GO:0098590 GO:0098771 GO:0098900 GO:0098901 GO:0098907 GO:0098910 GO:0099080 GO:0099081 GO:0099512 GO:0099623 GO:1901016 GO:1901018 GO:1901019 GO:1901021 GO:1901379 GO:1901381 GO:1903115 GO:1903169 GO:1903522 GO:1903779 GO:1904062 GO:1904064 GO:1904427 GO:1990778 GO:2001257 GO:2001259
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 PGG

Protein Analysis

174

Amino Acids

19.05

Weight (kDa)

5.77

Isoelectric Point (pI)

23.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 320
AclWI GGATC 1 cut(s) 111
AcoI YGGCCR 1 cut(s) 154
AcsI RAATTY 1 cut(s) 412
AcuI CTGAAG 2 cut(s) 222, 484
AfaI GTAC 2 cut(s) 228, 291
AfiI CCNNNNNNNGG 1 cut(s) 178
AflII CTTAAG 1 cut(s) 380
AluBI AGCT 4 cut(s) 27, 95, 143, 272
AluI AGCT 4 cut(s) 27, 95, 143, 272
Alw26I GTCTC 3 cut(s) 119, 350, 444
AlwI GGATC 1 cut(s) 111
Ama87I CYCGRG 1 cut(s) 281
AoxI GGCC 2 cut(s) 72, 154
ApeKI GCWGC 4 cut(s) 272, 311, 374, 479
ApoI RAATTY 1 cut(s) 412
AsuHPI GGTGA 2 cut(s) 193, 473
AsuII TTCGAA 2 cut(s) 33, 340
AvaI CYCGRG 1 cut(s) 281
BbsI GAAGAC 1 cut(s) 210
BbvI GCAGC 4 cut(s) 259, 323, 386, 466
BccI CCATC 1 cut(s) 146
BceAI ACGGC 1 cut(s) 223
BcoDI GTCTC 3 cut(s) 119, 350, 444
BfaI CTAG 2 cut(s) 173, 269
BfmI CTRYAG 2 cut(s) 76, 144
BfrI CTTAAG 1 cut(s) 380
BglI GCCNNNNNGGC 1 cut(s) 320
BisI GCNGC 5 cut(s) 273, 312, 321, 375, 480
BlsI GCNGC 5 cut(s) 274, 313, 322, 376, 481
BmcAI AGTACT 1 cut(s) 228
BmeT110I CYCGRG 1 cut(s) 281
BmsI GCATC 1 cut(s) 224
BpiI GAAGAC 1 cut(s) 210
BpmI CTGGAG 1 cut(s) 472
Bpu14I TTCGAA 2 cut(s) 33, 340
BpuEI CTTGAG 1 cut(s) 81
BsaJI CCNNGG 2 cut(s) 120, 315
Bsc4I CCNNNNNNNGG 1 cut(s) 178
Bse1I ACTGG 1 cut(s) 489
Bse3DI GCAATG 2 cut(s) 306, 418
BseDI CCNNGG 2 cut(s) 120, 315
BseLI CCNNNNNNNGG 1 cut(s) 178
BseMI GCAATG 2 cut(s) 306, 418
BseMII CTCAG 1 cut(s) 244
BseNI ACTGG 1 cut(s) 489
BseXI GCAGC 4 cut(s) 259, 323, 386, 466
BsgI GTGCAG 1 cut(s) 119
BshFI GGCC 2 cut(s) 74, 156
BsiHKCI CYCGRG 1 cut(s) 281
BslI CCNNNNNNNGG 1 cut(s) 178
BsmAI GTCTC 3 cut(s) 119, 350, 444
BsnI GGCC 2 cut(s) 74, 156
BsoBI CYCGRG 1 cut(s) 281
Bsp119I TTCGAA 2 cut(s) 33, 340
Bsp1407I TGTACA 1 cut(s) 289
Bsp143I GATC 2 cut(s) 116, 444
BspACI CCGC 1 cut(s) 320
BspANI GGCC 2 cut(s) 74, 156
BspCNI CTCAG 1 cut(s) 243
BspPI GGATC 1 cut(s) 111
BspT104I TTCGAA 2 cut(s) 33, 340
BspTI CTTAAG 1 cut(s) 380
BsrDI GCAATG 2 cut(s) 306, 418
BsrGI TGTACA 1 cut(s) 289
BsrI ACTGG 1 cut(s) 489
BssECI CCNNGG 2 cut(s) 120, 315
BssMI GATC 2 cut(s) 116, 444
BssT1I CCWWGG 2 cut(s) 120, 315
Bst4CI ACNGT 1 cut(s) 223
BstAFI CTTAAG 1 cut(s) 380
BstAUI TGTACA 1 cut(s) 289
BstBI TTCGAA 2 cut(s) 33, 340
BstC8I GCNNGC 1 cut(s) 325
BstDEI CTNAG 1 cut(s) 230
BstKTI GATC 2 cut(s) 119, 447
BstMAI GTCTC 3 cut(s) 119, 350, 444
BstMBI GATC 2 cut(s) 116, 444
BstMWI GCNNNNNNNGC 3 cut(s) 101, 317, 320
BstSFI CTRYAG 2 cut(s) 76, 144
BstV1I GCAGC 4 cut(s) 259, 323, 386, 466
BstV2I GAAGAC 1 cut(s) 210
BstX2I RGATCY 1 cut(s) 116
BstYI RGATCY 1 cut(s) 116
BsuRI GGCC 2 cut(s) 74, 156
BtsI GCAGTG 1 cut(s) 217
BtsIMutI CAGTG 2 cut(s) 217, 496
Cac8I GCNNGC 1 cut(s) 325
Csp6I GTAC 2 cut(s) 227, 290
CviAII CATG 2 cut(s) 67, 476
CviQI GTAC 2 cut(s) 227, 290
DdeI CTNAG 1 cut(s) 230
DpnI GATC 2 cut(s) 118, 446
DpnII GATC 2 cut(s) 116, 444
EaeI YGGCCR 1 cut(s) 154
Eco130I CCWWGG 2 cut(s) 120, 315
Eco147I AGGCCT 1 cut(s) 74
Eco57I CTGAAG 2 cut(s) 222, 484
Eco88I CYCGRG 1 cut(s) 281
EcoT14I CCWWGG 2 cut(s) 120, 315
ErhI CCWWGG 2 cut(s) 120, 315
FaeI CATG 2 cut(s) 70, 479
FaiI YATR 6 cut(s) 68, 140, 146, 198, 236, 477
FatI CATG 2 cut(s) 66, 475
Fnu4HI GCNGC 5 cut(s) 273, 312, 321, 375, 480
Fsp4HI GCNGC 5 cut(s) 273, 312, 321, 375, 480
FspBI CTAG 2 cut(s) 173, 269
GluI GCNGC 5 cut(s) 273, 312, 321, 375, 480
GsuI CTGGAG 1 cut(s) 472
HaeIII GGCC 2 cut(s) 74, 156
Hin1II CATG 2 cut(s) 70, 479
HphI GGTGA 2 cut(s) 193, 473
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 2 cut(s) 10, 449
Hpy188III TCNNGA 1 cut(s) 283
Hpy8I GTNNAC 1 cut(s) 184
HpyCH4III ACNGT 1 cut(s) 223
HpyCH4V TGCA 5 cut(s) 136, 215, 311, 482, 510
HpyF10VI GCNNNNNNNGC 3 cut(s) 101, 317, 320
HpyF3I CTNAG 1 cut(s) 230
Hsp92II CATG 2 cut(s) 70, 479
Kzo9I GATC 2 cut(s) 116, 444
LpnPI CCDG 2 cut(s) 127, 502
Lsp1109I GCAGC 4 cut(s) 259, 323, 386, 466
LweI GCATC 1 cut(s) 224
MaeI CTAG 2 cut(s) 173, 269
MaeIII GTNAC 1 cut(s) 386
MalI GATC 2 cut(s) 118, 446
MboI GATC 2 cut(s) 116, 444
MboII GAAGA 2 cut(s) 215, 464
MflI RGATCY 1 cut(s) 116
MluCI AATT 1 cut(s) 412
MnlI CCTC 8 cut(s) 7, 64, 242, 270, 338, 343, 372, 451
MseI TTAA 1 cut(s) 381
MspCI CTTAAG 1 cut(s) 380
MwoI GCNNNNNNNGC 3 cut(s) 101, 317, 320
NdeII GATC 2 cut(s) 116, 444
NlaIII CATG 2 cut(s) 70, 479
NspV TTCGAA 2 cut(s) 33, 340
PceI AGGCCT 1 cut(s) 74
PkrI GCNGC 5 cut(s) 274, 313, 322, 376, 481
PsuI RGATCY 1 cut(s) 116
RsaI GTAC 2 cut(s) 228, 291
RsaNI GTAC 2 cut(s) 227, 290
SaqAI TTAA 1 cut(s) 381
SatI GCNGC 5 cut(s) 273, 312, 321, 375, 480
Sau3AI GATC 2 cut(s) 116, 444
ScaI AGTACT 1 cut(s) 228
SetI ASST 6 cut(s) 29, 66, 97, 145, 274, 364
SfaNI GCATC 1 cut(s) 224
SfcI CTRYAG 2 cut(s) 76, 144
SfuI TTCGAA 2 cut(s) 33, 340
SmlI CTYRAG 2 cut(s) 96, 380
SmoI CTYRAG 2 cut(s) 96, 380
Sse9I AATT 1 cut(s) 412
SseBI AGGCCT 1 cut(s) 74
SsiI CCGC 1 cut(s) 320
SspMI CTAG 2 cut(s) 173, 269
StuI AGGCCT 1 cut(s) 74
StyI CCWWGG 2 cut(s) 120, 315
TaaI ACNGT 1 cut(s) 223
TaqI TCGA 3 cut(s) 33, 340, 443
TasI AATT 1 cut(s) 412
TatI WGTACW 2 cut(s) 226, 289
TauI GCSGC 1 cut(s) 323
Tru1I TTAA 1 cut(s) 381
Tru9I TTAA 1 cut(s) 381
TscAI CASTG 2 cut(s) 217, 496
TseI GCWGC 4 cut(s) 272, 311, 374, 479
TspDTI ATGAA 3 cut(s) 59, 407, 464
TspGWI ACGGA 1 cut(s) 325
TspRI CASTG 2 cut(s) 217, 496
Vha464I CTTAAG 1 cut(s) 380
XapI RAATTY 1 cut(s) 412
XspI CTAG 2 cut(s) 173, 269
ZrmI AGTACT 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.