Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001790

Physical Location & Seq

Genomic Coordinates Reverse (-)

20005427 .. 20008073

Gene Structure 2647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0126100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGCGAGCACCAAAGTCCAGCGGATTATGACACAGCCTATTAACTTGATTTTCAGGTTCCTCCAAAGTAAAGCTCGGATTCAGATTTGGCTCTTTGAGCAGAAAGATGTCAGGATTGAAGGCCGCATTATTGGATTTGATGAGTACATGAATCTGGTTCTGGATGAGGCAGAAGAAGTCAGCATCAAGAAAAACACCAGGAAGACATTAGGAAGGATTCTTCTTAAAGGTGACAACATAACTCTGATGATGAACACGGGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001508 GO:0002027 GO:0003008 GO:0003012 GO:0003013 GO:0003015 GO:0003205 GO:0003230 GO:0003279 GO:0003283 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006873 GO:0006874 GO:0006875 GO:0006888 GO:0006928 GO:0006936 GO:0006937 GO:0006941 GO:0006942 GO:0007009 GO:0007154 GO:0007165 GO:0007267 GO:0007275 GO:0007507 GO:0008015 GO:0008016 GO:0008092 GO:0008104 GO:0008150 GO:0009893 GO:0009987 GO:0010256 GO:0010468 GO:0010522 GO:0010604 GO:0010628 GO:0010646 GO:0010880 GO:0010881 GO:0010882 GO:0010959 GO:0014704 GO:0016020 GO:0016043 GO:0016192 GO:0016323 GO:0019222 GO:0019722 GO:0019725 GO:0019899 GO:0019900 GO:0019901 GO:0019932 GO:0022898 GO:0023051 GO:0023052 GO:0030001 GO:0030003 GO:0030016 GO:0030017 GO:0030018 GO:0030029 GO:0030048 GO:0030054 GO:0030154 GO:0030315 GO:0030507 GO:0030674 GO:0031430 GO:0031647 GO:0031672 GO:0031674 GO:0032409 GO:0032411 GO:0032412 GO:0032414 GO:0032501 GO:0032502 GO:0032879 GO:0032970 GO:0033036 GO:0033292 GO:0033365 GO:0034394 GO:0034613 GO:0034762 GO:0034764 GO:0034765 GO:0034767 GO:0035556 GO:0035637 GO:0036309 GO:0036371 GO:0042383 GO:0042391 GO:0042592 GO:0042692 GO:0043034 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043266 GO:0043268 GO:0043269 GO:0043270 GO:0043292 GO:0044057 GO:0044093 GO:0044291 GO:0044325 GO:0044422 GO:0044424 GO:0044425 GO:0044444 GO:0044449 GO:0044459 GO:0044464 GO:0046907 GO:0048193 GO:0048468 GO:0048513 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050821 GO:0050896 GO:0051049 GO:0051050 GO:0051117 GO:0051179 GO:0051234 GO:0051239 GO:0051270 GO:0051279 GO:0051282 GO:0051641 GO:0051649 GO:0051716 GO:0051899 GO:0051924 GO:0051928 GO:0055001 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0055117 GO:0060047 GO:0060048 GO:0060090 GO:0060255 GO:0060306 GO:0060307 GO:0060341 GO:0061024 GO:0061061 GO:0061337 GO:0065007 GO:0065008 GO:0065009 GO:0070252 GO:0070296 GO:0070727 GO:0070838 GO:0070972 GO:0071840 GO:0071944 GO:0072359 GO:0072503 GO:0072507 GO:0072511 GO:0072657 GO:0072659 GO:0086001 GO:0086002 GO:0086003 GO:0086004 GO:0086005 GO:0086010 GO:0086012 GO:0086014 GO:0086015 GO:0086018 GO:0086019 GO:0086026 GO:0086046 GO:0086065 GO:0086066 GO:0086070 GO:0086091 GO:0090257 GO:0098590 GO:0098771 GO:0098900 GO:0098901 GO:0098907 GO:0098910 GO:0099080 GO:0099081 GO:0099512 GO:0099623 GO:1901016 GO:1901018 GO:1901019 GO:1901021 GO:1901379 GO:1901381 GO:1903115 GO:1903169 GO:1903522 GO:1903779 GO:1904062 GO:1904064 GO:1904427 GO:1990778 GO:2001257 GO:2001259

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 PGG

Protein Analysis

88

Amino Acids

10.3

Weight (kDa)

9.89

Isoelectric Point (pI)

38.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LSM	PF01423	19 - 84	4.7e-18	LSM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001790)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13500 FvH4_4g13500
malus_domestica	MD13G1283300.v1.1 MD13G1283400.v1.1
prunus_persica	Prupe.1G160000_v2.0.a1 Prupe.1G160100_v2.0.a1 Prupe.1G160200_v2.0.a1
pyrus_communis	pycom03g20490 pycom420g01200 pycom420g01210
rosa_chinensis	RchiOBHm_Chr4g0413451 RchiOBHm_Chr4g0414131 RchiOBHm_Chr6g0290071
rosa_laevigata	RLG00000008168 RLG00000008218
rosa_multiflora	Rmu_co8088556.1_g000001 Rmu_co8439379.1_g000001 Rmu_co8467899.1_g000001 Rmu_sc0000808.1_g000058 Rmu_sc0005828.1_g000012 Rmu_sc0007671.1_g000020 Rmu_sc0007671.1_g000021 Rmu_sc0008865.1_g000002 Rmu_sc0034113.1_g000001
rosa_roxburghii	Rroxscaffold_1G00024900 Rroxscaffold_5G00357350 Rroxscaffold_5G00358090
rosa_rugosa	Rorug04G0120500 Rorug04G0120500 Rorug04G0120500 Rorug04G0126100 Rorug04G0126200 Rorug04G0126300
rosa_samantha	Rh4AG180100 Rh4AG184500 Rh4BG179100 Rh4BG183900 Rh4CG191200 Rh4CG196200 Rh4DG175200 Rh4DG179800 Rh4DG311500 Rh5AG273600 Rh6CG333900 Rh6DG239300
rosa_wichuraiana	Rw4G014990 Rw4G015710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	22, 124
AfaI	GTAC	1 cut(s)	146
AgsI	TTSAA	1 cut(s)	119
AjnI	CCWGG	1 cut(s)	197
AluBI	AGCT	1 cut(s)	74
AluI	AGCT	1 cut(s)	74
Alw21I	GWGCWC	1 cut(s)	11
AoxI	GGCC	1 cut(s)	121
AsuHPI	GGTGA	1 cut(s)	242
BbsI	GAAGAC	1 cut(s)	209
Bbv12I	GWGCWC	1 cut(s)	11
BciT130I	CCWGG	1 cut(s)	199
BisI	GCNGC	1 cut(s)	124
BlsI	GCNGC	1 cut(s)	125
Bme1390I	CCNGG	1 cut(s)	199
BmiI	GGNNCC	1 cut(s)	59
BmrFI	CCNGG	1 cut(s)	199
BmsI	GCATC	1 cut(s)	192
BpiI	GAAGAC	1 cut(s)	209
BseBI	CCWGG	1 cut(s)	199
BseGI	GGATG	1 cut(s)	169
BshFI	GGCC	1 cut(s)	123
BsiHKAI	GWGCWC	1 cut(s)	11
BsnI	GGCC	1 cut(s)	123
Bsp1286I	GDGCHC	1 cut(s)	11
BspACI	CCGC	2 cut(s)	22, 124
BspANI	GGCC	1 cut(s)	123
BspLI	GGNNCC	1 cut(s)	59
Bst2UI	CCWGG	1 cut(s)	199
BstC8I	GCNNGC	1 cut(s)	7
BstF5I	GGATG	1 cut(s)	169
BstMWI	GCNNNNNNNGC	1 cut(s)	97
BstNI	CCWGG	1 cut(s)	199
BstSCI	CCNGG	1 cut(s)	197
BstV2I	GAAGAC	1 cut(s)	209
BsuRI	GGCC	1 cut(s)	123
BtsCI	GGATG	1 cut(s)	169
Cac8I	GCNNGC	1 cut(s)	7
Csp6I	GTAC	1 cut(s)	145
CviAII	CATG	1 cut(s)	148
CviJI	RGCY	4 cut(s)	37, 74, 91, 123
CviKI_1	RGCY	4 cut(s)	37, 74, 91, 123
CviQI	GTAC	1 cut(s)	145
EcoRII	CCWGG	1 cut(s)	197
FaeI	CATG	1 cut(s)	151
FaiI	YATR	3 cut(s)	29, 149, 239
FatI	CATG	1 cut(s)	147
Fnu4HI	GCNGC	1 cut(s)	124
FokI	GGATG	1 cut(s)	176
Fsp4HI	GCNGC	1 cut(s)	124
GluI	GCNGC	1 cut(s)	124
HaeIII	GGCC	1 cut(s)	123
Hin1II	CATG	1 cut(s)	151
HinfI	GANTC	3 cut(s)	79, 151, 217
HphI	GGTGA	1 cut(s)	242
Hpy188I	TCNGA	3 cut(s)	78, 84, 246
Hpy188III	TCNNGA	3 cut(s)	112, 161, 187
HpyAV	CCTTC	2 cut(s)	113, 207
HpyF10VI	GCNNNNNNNGC	1 cut(s)	97
Hsp92II	CATG	1 cut(s)	151
LpnPI	CCDG	7 cut(s)	32, 40, 97, 140, 146, 184, 211
LweI	GCATC	1 cut(s)	192
MaeIII	GTNAC	1 cut(s)	230
MboII	GAAGA	3 cut(s)	185, 212, 214
MhlI	GDGCHC	1 cut(s)	11
MnlI	CCTC	2 cut(s)	71, 160
MseI	TTAA	2 cut(s)	42, 225
MspA1I	CMGCKG	1 cut(s)	22
MspR9I	CCNGG	1 cut(s)	199
MvaI	CCWGG	1 cut(s)	199
MwoI	GCNNNNNNNGC	1 cut(s)	97
NlaIII	CATG	1 cut(s)	151
NlaIV	GGNNCC	1 cut(s)	59
NmuCI	GTSAC	1 cut(s)	230
PfeI	GAWTC	3 cut(s)	79, 151, 217
PkrI	GCNGC	1 cut(s)	125
Psp6I	CCWGG	1 cut(s)	197
PspGI	CCWGG	1 cut(s)	197
PspN4I	GGNNCC	1 cut(s)	59
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
SaqAI	TTAA	2 cut(s)	42, 225
SatI	GCNGC	1 cut(s)	124
ScrFI	CCNGG	1 cut(s)	199
SduI	GDGCHC	1 cut(s)	11
SetI	ASST	3 cut(s)	59, 76, 232
SfaNI	GCATC	1 cut(s)	192
SsiI	CCGC	2 cut(s)	22, 124
StyD4I	CCNGG	1 cut(s)	197
TatI	WGTACW	1 cut(s)	144
TauI	GCSGC	1 cut(s)	126
TfiI	GAWTC	3 cut(s)	79, 151, 217
Tru1I	TTAA	2 cut(s)	42, 225
Tru9I	TTAA	2 cut(s)	42, 225
TseFI	GTSAC	1 cut(s)	230
Tsp45I	GTSAC	1 cut(s)	230
TspDTI	ATGAA	2 cut(s)	164, 266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.