Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8088556.1

Orthogroup ID

OG0001790

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 305

Gene Structure 304 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8088556.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 304 bp

atggcttcagatgaggaaatagatagcttgttcgaaaacacgatgaaaggacaatgggaaaaggtcatggaggcctacagaaatagtattacagctcaagtagccaagataaccagatccaaggagactgctctgcacatagctatagcagatggccgaaccgaaatcgtcctagagttggtgaacattattttccatactgaagacggcagtgcatcaaccgtagtactcagcatagcaaatgatagaggcaacacgcctctacatctagctgcttggctcgggaatgtacaagtgtgccaca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001508 GO:0002027 GO:0003008 GO:0003012 GO:0003013 GO:0003015 GO:0003205 GO:0003230 GO:0003279 GO:0003283 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006873 GO:0006874 GO:0006875 GO:0006888 GO:0006928 GO:0006936 GO:0006937 GO:0006941 GO:0006942 GO:0007009 GO:0007154 GO:0007165 GO:0007267 GO:0007275 GO:0007507 GO:0008015 GO:0008016 GO:0008092 GO:0008104 GO:0008150 GO:0009893 GO:0009987 GO:0010256 GO:0010468 GO:0010522 GO:0010604 GO:0010628 GO:0010646 GO:0010880 GO:0010881 GO:0010882 GO:0010959 GO:0014704 GO:0016020 GO:0016043 GO:0016192 GO:0016323 GO:0019222 GO:0019722 GO:0019725 GO:0019899 GO:0019900 GO:0019901 GO:0019932 GO:0022898 GO:0023051 GO:0023052 GO:0030001 GO:0030003 GO:0030016 GO:0030017 GO:0030018 GO:0030029 GO:0030048 GO:0030054 GO:0030154 GO:0030315 GO:0030507 GO:0030674 GO:0031430 GO:0031647 GO:0031672 GO:0031674 GO:0032409 GO:0032411 GO:0032412 GO:0032414 GO:0032501 GO:0032502 GO:0032879 GO:0032970 GO:0033036 GO:0033292 GO:0033365 GO:0034394 GO:0034613 GO:0034762 GO:0034764 GO:0034765 GO:0034767 GO:0035556 GO:0035637 GO:0036309 GO:0036371 GO:0042383 GO:0042391 GO:0042592 GO:0042692 GO:0043034 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043266 GO:0043268 GO:0043269 GO:0043270 GO:0043292 GO:0044057 GO:0044093 GO:0044291 GO:0044325 GO:0044422 GO:0044424 GO:0044425 GO:0044444 GO:0044449 GO:0044459 GO:0044464 GO:0046907 GO:0048193 GO:0048468 GO:0048513 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050821 GO:0050896 GO:0051049 GO:0051050 GO:0051117 GO:0051179 GO:0051234 GO:0051239 GO:0051270 GO:0051279 GO:0051282 GO:0051641 GO:0051649 GO:0051716 GO:0051899 GO:0051924 GO:0051928 GO:0055001 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0055117 GO:0060047 GO:0060048 GO:0060090 GO:0060255 GO:0060306 GO:0060307 GO:0060341 GO:0061024 GO:0061061 GO:0061337 GO:0065007 GO:0065008 GO:0065009 GO:0070252 GO:0070296 GO:0070727 GO:0070838 GO:0070972 GO:0071840 GO:0071944 GO:0072359 GO:0072503 GO:0072507 GO:0072511 GO:0072657 GO:0072659 GO:0086001 GO:0086002 GO:0086003 GO:0086004 GO:0086005 GO:0086010 GO:0086012 GO:0086014 GO:0086015 GO:0086018 GO:0086019 GO:0086026 GO:0086046 GO:0086065 GO:0086066 GO:0086070 GO:0086091 GO:0090257 GO:0098590 GO:0098771 GO:0098900 GO:0098901 GO:0098907 GO:0098910 GO:0099080 GO:0099081 GO:0099512 GO:0099623 GO:1901016 GO:1901018 GO:1901019 GO:1901021 GO:1901379 GO:1901381 GO:1903115 GO:1903169 GO:1903522 GO:1903779 GO:1904062 GO:1904064 GO:1904427 GO:1990778 GO:2001257 GO:2001259

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 PGG

Protein Analysis

101

Amino Acids

11.14

Weight (kDa)

5.02

Isoelectric Point (pI)

31.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001790)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13500 FvH4_4g13500
malus_domestica	MD13G1283300.v1.1 MD13G1283400.v1.1
prunus_persica	Prupe.1G160000_v2.0.a1 Prupe.1G160100_v2.0.a1 Prupe.1G160200_v2.0.a1
pyrus_communis	pycom03g20490 pycom420g01200 pycom420g01210
rosa_chinensis	RchiOBHm_Chr4g0413451 RchiOBHm_Chr4g0414131 RchiOBHm_Chr6g0290071
rosa_laevigata	RLG00000008168 RLG00000008218
rosa_multiflora	Rmu_co8088556.1_g000001 Rmu_co8439379.1_g000001 Rmu_co8467899.1_g000001 Rmu_sc0000808.1_g000058 Rmu_sc0005828.1_g000012 Rmu_sc0007671.1_g000020 Rmu_sc0007671.1_g000021 Rmu_sc0008865.1_g000002 Rmu_sc0034113.1_g000001
rosa_roxburghii	Rroxscaffold_1G00024900 Rroxscaffold_5G00357350 Rroxscaffold_5G00358090
rosa_rugosa	Rorug04G0120500 Rorug04G0120500 Rorug04G0120500 Rorug04G0126100 Rorug04G0126200 Rorug04G0126300
rosa_samantha	Rh4AG180100 Rh4AG184500 Rh4BG179100 Rh4BG183900 Rh4CG191200 Rh4CG196200 Rh4DG175200 Rh4DG179800 Rh4DG311500 Rh5AG273600 Rh6CG333900 Rh6DG239300
rosa_wichuraiana	Rw4G014990 Rw4G015710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	111
AcoI	YGGCCR	1 cut(s)	154
AcuI	CTGAAG	1 cut(s)	222
AfaI	GTAC	2 cut(s)	228, 291
AfiI	CCNNNNNNNGG	1 cut(s)	178
AluBI	AGCT	4 cut(s)	27, 95, 143, 272
AluI	AGCT	4 cut(s)	27, 95, 143, 272
Alw26I	GTCTC	1 cut(s)	119
AlwI	GGATC	1 cut(s)	111
Ama87I	CYCGRG	1 cut(s)	281
AoxI	GGCC	2 cut(s)	72, 154
ApeKI	GCWGC	1 cut(s)	272
AsuHPI	GGTGA	1 cut(s)	193
AsuII	TTCGAA	1 cut(s)	33
AvaI	CYCGRG	1 cut(s)	281
BbsI	GAAGAC	1 cut(s)	210
BbvI	GCAGC	1 cut(s)	259
BccI	CCATC	1 cut(s)	146
BceAI	ACGGC	1 cut(s)	223
BcoDI	GTCTC	1 cut(s)	119
BfaI	CTAG	2 cut(s)	173, 269
BfmI	CTRYAG	2 cut(s)	76, 144
BisI	GCNGC	1 cut(s)	273
BlsI	GCNGC	1 cut(s)	274
BmcAI	AGTACT	1 cut(s)	228
BmeT110I	CYCGRG	1 cut(s)	281
BmsI	GCATC	1 cut(s)	224
BpiI	GAAGAC	1 cut(s)	210
Bpu14I	TTCGAA	1 cut(s)	33
BpuEI	CTTGAG	1 cut(s)	81
BsaJI	CCNNGG	1 cut(s)	120
Bsc4I	CCNNNNNNNGG	1 cut(s)	178
BseDI	CCNNGG	1 cut(s)	120
BseLI	CCNNNNNNNGG	1 cut(s)	178
BseMII	CTCAG	1 cut(s)	244
BseXI	GCAGC	1 cut(s)	259
BsgI	GTGCAG	1 cut(s)	119
BshFI	GGCC	2 cut(s)	74, 156
BsiHKCI	CYCGRG	1 cut(s)	281
BslI	CCNNNNNNNGG	1 cut(s)	178
BsmAI	GTCTC	1 cut(s)	119
BsnI	GGCC	2 cut(s)	74, 156
BsoBI	CYCGRG	1 cut(s)	281
Bsp119I	TTCGAA	1 cut(s)	33
Bsp1407I	TGTACA	1 cut(s)	289
Bsp143I	GATC	1 cut(s)	116
BspANI	GGCC	2 cut(s)	74, 156
BspCNI	CTCAG	1 cut(s)	243
BspPI	GGATC	1 cut(s)	111
BspT104I	TTCGAA	1 cut(s)	33
BsrGI	TGTACA	1 cut(s)	289
BssECI	CCNNGG	1 cut(s)	120
BssMI	GATC	1 cut(s)	116
BssT1I	CCWWGG	1 cut(s)	120
Bst4CI	ACNGT	1 cut(s)	223
BstAUI	TGTACA	1 cut(s)	289
BstBI	TTCGAA	1 cut(s)	33
BstDEI	CTNAG	1 cut(s)	230
BstKTI	GATC	1 cut(s)	119
BstMAI	GTCTC	1 cut(s)	119
BstMBI	GATC	1 cut(s)	116
BstMWI	GCNNNNNNNGC	1 cut(s)	101
BstSFI	CTRYAG	2 cut(s)	76, 144
BstV1I	GCAGC	1 cut(s)	259
BstV2I	GAAGAC	1 cut(s)	210
BstX2I	RGATCY	1 cut(s)	116
BstYI	RGATCY	1 cut(s)	116
BsuRI	GGCC	2 cut(s)	74, 156
BtsI	GCAGTG	1 cut(s)	217
BtsIMutI	CAGTG	1 cut(s)	217
Csp6I	GTAC	2 cut(s)	227, 290
CviAII	CATG	1 cut(s)	67
CviJI	RGCY	9 cut(s)	5, 27, 74, 95, 104, 143, 156, 272, 280
CviKI_1	RGCY	9 cut(s)	5, 27, 74, 95, 104, 143, 156, 272, 280
CviQI	GTAC	2 cut(s)	227, 290
DdeI	CTNAG	1 cut(s)	230
DpnI	GATC	1 cut(s)	118
DpnII	GATC	1 cut(s)	116
EaeI	YGGCCR	1 cut(s)	154
Eco130I	CCWWGG	1 cut(s)	120
Eco147I	AGGCCT	1 cut(s)	74
Eco57I	CTGAAG	1 cut(s)	222
Eco88I	CYCGRG	1 cut(s)	281
EcoT14I	CCWWGG	1 cut(s)	120
ErhI	CCWWGG	1 cut(s)	120
FaeI	CATG	1 cut(s)	70
FaiI	YATR	5 cut(s)	68, 140, 146, 198, 236
FatI	CATG	1 cut(s)	66
Fnu4HI	GCNGC	1 cut(s)	273
Fsp4HI	GCNGC	1 cut(s)	273
FspBI	CTAG	2 cut(s)	173, 269
GluI	GCNGC	1 cut(s)	273
HaeIII	GGCC	2 cut(s)	74, 156
Hin1II	CATG	1 cut(s)	70
HphI	GGTGA	1 cut(s)	193
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188I	TCNGA	1 cut(s)	10
Hpy188III	TCNNGA	1 cut(s)	283
Hpy8I	GTNNAC	1 cut(s)	184
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4V	TGCA	2 cut(s)	136, 215
HpyF10VI	GCNNNNNNNGC	1 cut(s)	101
HpyF3I	CTNAG	1 cut(s)	230
Hsp92II	CATG	1 cut(s)	70
Kzo9I	GATC	1 cut(s)	116
LpnPI	CCDG	1 cut(s)	127
Lsp1109I	GCAGC	1 cut(s)	259
LweI	GCATC	1 cut(s)	224
MaeI	CTAG	2 cut(s)	173, 269
MalI	GATC	1 cut(s)	118
MboI	GATC	1 cut(s)	116
MboII	GAAGA	1 cut(s)	215
MflI	RGATCY	1 cut(s)	116
MnlI	CCTC	4 cut(s)	7, 64, 242, 270
MwoI	GCNNNNNNNGC	1 cut(s)	101
NdeII	GATC	1 cut(s)	116
NlaIII	CATG	1 cut(s)	70
NspV	TTCGAA	1 cut(s)	33
PceI	AGGCCT	1 cut(s)	74
PkrI	GCNGC	1 cut(s)	274
PsuI	RGATCY	1 cut(s)	116
RsaI	GTAC	2 cut(s)	228, 291
RsaNI	GTAC	2 cut(s)	227, 290
SatI	GCNGC	1 cut(s)	273
Sau3AI	GATC	1 cut(s)	116
ScaI	AGTACT	1 cut(s)	228
SetI	ASST	5 cut(s)	29, 66, 97, 145, 274
SfaNI	GCATC	1 cut(s)	224
SfcI	CTRYAG	2 cut(s)	76, 144
SfuI	TTCGAA	1 cut(s)	33
SmlI	CTYRAG	1 cut(s)	96
SmoI	CTYRAG	1 cut(s)	96
SseBI	AGGCCT	1 cut(s)	74
SspMI	CTAG	2 cut(s)	173, 269
StuI	AGGCCT	1 cut(s)	74
StyI	CCWWGG	1 cut(s)	120
TaaI	ACNGT	1 cut(s)	223
TaqI	TCGA	1 cut(s)	33
TatI	WGTACW	2 cut(s)	226, 289
TscAI	CASTG	1 cut(s)	217
TseI	GCWGC	1 cut(s)	272
TspDTI	ATGAA	1 cut(s)	59
TspRI	CASTG	1 cut(s)	217
XspI	CTAG	2 cut(s)	173, 269
ZrmI	AGTACT	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.