Rmu_co8439379.1_g000001

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8439379.1
OG0001790
Physical Location & Seq
Reverse (-)
2 .. 1123
1122 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8439379.1_g000001.1.cds

Sequence Viewer

Length: 908 bp
atgaatgaattggttgaccgtacttctttatacaaatatcgaaatactgggaaaaatccccaagaaactcaacccagctgcaaagataaagaagaatgtgaagtgcctgatcttacaatgctacagcaagcttcacccttatcatctgatcatgcggcacttaacagtaaagatacaagtattgagacgactatcttctcctcaaaccagaacaattatacgatagggagtgatcagaatgaacaagatagaaggaacaataatgccttgggaggtaagaagaatggagttcttgtagcagggaaaaatcagtcacctgttttaattgcagcaaagatgggagtaactgaaatggtggagaaaatcctagacaaatttccagtggccatccaggatgttgactctgataacaagaatgttatactcttagcagttgagaacaggcaaccccatgtttacaatcttcttcagaagagaaagatactaaaagaaagcctgttgcgtcagttggacaacgaaggtaacagtgcattacatcttgctgctacatgtggacggtaccgaccttggcttattccaggcgcggcattgcaaatgcaatgggaaatcaagtggtataagtttgtcaaaaactccatgccgcatcgttactttgttcgctacaacaaaagaggccagacaccaaaggagatattcatagatacacacaaacatcttataaaagaaggaagcaaatggctaaccaaaacctcggaatcatgctctgtggttgcagccctcattgcaacggttgcatttgctacttcagcaactgtaccaggaggactgaatcagcaaacaggcgagccaattctcaaagacaagacagcattcagtgccttcaccatttcatcactagttgctctctg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001508 GO:0002027 GO:0003008 GO:0003012 GO:0003013 GO:0003015 GO:0003205 GO:0003230 GO:0003279 GO:0003283 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006873 GO:0006874 GO:0006875 GO:0006888 GO:0006928 GO:0006936 GO:0006937 GO:0006941 GO:0006942 GO:0007009 GO:0007154 GO:0007165 GO:0007267 GO:0007275 GO:0007507 GO:0008015 GO:0008016 GO:0008092 GO:0008104 GO:0008150 GO:0009893 GO:0009987 GO:0010256 GO:0010468 GO:0010522 GO:0010604 GO:0010628 GO:0010646 GO:0010880 GO:0010881 GO:0010882 GO:0010959 GO:0014704 GO:0016020 GO:0016043 GO:0016192 GO:0016323 GO:0019222 GO:0019722 GO:0019725 GO:0019899 GO:0019900 GO:0019901 GO:0019932 GO:0022898 GO:0023051 GO:0023052 GO:0030001 GO:0030003 GO:0030016 GO:0030017 GO:0030018 GO:0030029 GO:0030048 GO:0030054 GO:0030154 GO:0030315 GO:0030507 GO:0030674 GO:0031430 GO:0031647 GO:0031672 GO:0031674 GO:0032409 GO:0032411 GO:0032412 GO:0032414 GO:0032501 GO:0032502 GO:0032879 GO:0032970 GO:0033036 GO:0033292 GO:0033365 GO:0034394 GO:0034613 GO:0034762 GO:0034764 GO:0034765 GO:0034767 GO:0035556 GO:0035637 GO:0036309 GO:0036371 GO:0042383 GO:0042391 GO:0042592 GO:0042692 GO:0043034 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043266 GO:0043268 GO:0043269 GO:0043270 GO:0043292 GO:0044057 GO:0044093 GO:0044291 GO:0044325 GO:0044422 GO:0044424 GO:0044425 GO:0044444 GO:0044449 GO:0044459 GO:0044464 GO:0046907 GO:0048193 GO:0048468 GO:0048513 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050821 GO:0050896 GO:0051049 GO:0051050 GO:0051117 GO:0051179 GO:0051234 GO:0051239 GO:0051270 GO:0051279 GO:0051282 GO:0051641 GO:0051649 GO:0051716 GO:0051899 GO:0051924 GO:0051928 GO:0055001 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0055117 GO:0060047 GO:0060048 GO:0060090 GO:0060255 GO:0060306 GO:0060307 GO:0060341 GO:0061024 GO:0061061 GO:0061337 GO:0065007 GO:0065008 GO:0065009 GO:0070252 GO:0070296 GO:0070727 GO:0070838 GO:0070972 GO:0071840 GO:0071944 GO:0072359 GO:0072503 GO:0072507 GO:0072511 GO:0072657 GO:0072659 GO:0086001 GO:0086002 GO:0086003 GO:0086004 GO:0086005 GO:0086010 GO:0086012 GO:0086014 GO:0086015 GO:0086018 GO:0086019 GO:0086026 GO:0086046 GO:0086065 GO:0086066 GO:0086070 GO:0086091 GO:0090257 GO:0098590 GO:0098771 GO:0098900 GO:0098901 GO:0098907 GO:0098910 GO:0099080 GO:0099081 GO:0099512 GO:0099623 GO:1901016 GO:1901018 GO:1901019 GO:1901021 GO:1901379 GO:1901381 GO:1903115 GO:1903169 GO:1903522 GO:1903779 GO:1904062 GO:1904064 GO:1904427 GO:1990778 GO:2001257 GO:2001259
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 PGG

Protein Analysis

302

Amino Acids

33.72

Weight (kDa)

9.1

Isoelectric Point (pI)

43.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 719
Acc65I GGTACC 1 cut(s) 558
AccB1I GGYRCC 1 cut(s) 558
AccII CGCG 1 cut(s) 584
AciI CCGC 3 cut(s) 155, 584, 641
AcoI YGGCCR 1 cut(s) 384
AcsI RAATTY 1 cut(s) 374
AcuI CTGAAG 2 cut(s) 452, 789
AfaI GTAC 3 cut(s) 22, 560, 816
AflIII ACRYGT 1 cut(s) 548
AhlI ACTAGT 1 cut(s) 895
AjnI CCWGG 3 cut(s) 390, 577, 817
AluBI AGCT 2 cut(s) 78, 131
AluI AGCT 2 cut(s) 78, 131
Alw26I GTCTC 1 cut(s) 179
AlwNI CAGNNNCTG 1 cut(s) 812
AoxI GGCC 2 cut(s) 384, 673
ApeKI GCWGC 4 cut(s) 78, 329, 542, 773
ApoI RAATTY 1 cut(s) 374
Asp718I GGTACC 1 cut(s) 558
AspLEI GCGC 1 cut(s) 584
AsuHPI GGTGA 3 cut(s) 126, 306, 874
BalI TGGCCA 1 cut(s) 386
BanI GGYRCC 1 cut(s) 558
BbvI GCAGC 4 cut(s) 65, 341, 529, 785
BccI CCATC 2 cut(s) 331, 395
BciT130I CCWGG 3 cut(s) 392, 579, 819
BclI TGATCA 2 cut(s) 148, 232
BcoDI GTCTC 1 cut(s) 179
BcuI ACTAGT 1 cut(s) 895
BfaI CTAG 2 cut(s) 368, 896
BfmI CTRYAG 1 cut(s) 122
BisI GCNGC 7 cut(s) 79, 156, 330, 543, 585, 641, 774
BlsI GCNGC 7 cut(s) 80, 157, 331, 544, 586, 642, 775
Bme1390I CCNGG 3 cut(s) 392, 579, 819
BmiI GGNNCC 1 cut(s) 560
BmrFI CCNGG 3 cut(s) 392, 579, 819
BmrI ACTGGG 1 cut(s) 57
BmsI GCATC 1 cut(s) 652
BmuI ACTGGG 1 cut(s) 57
BsaJI CCNNGG 3 cut(s) 267, 566, 750
BsaXI ACNNNNNCTCC 2 cut(s) 279, 309
Bse1I ACTGG 2 cut(s) 52, 380
Bse3DI GCAATG 3 cut(s) 587, 605, 780
BseBI CCWGG 3 cut(s) 392, 579, 819
BseDI CCNNGG 3 cut(s) 267, 566, 750
BseGI GGATG 2 cut(s) 387, 400
BseMI GCAATG 3 cut(s) 587, 605, 780
BseNI ACTGG 2 cut(s) 52, 380
BseRI GAGGAG 1 cut(s) 190
BseXI GCAGC 4 cut(s) 65, 341, 529, 785
BseYI CCCAGC 1 cut(s) 74
Bsh1236I CGCG 1 cut(s) 584
BshFI GGCC 2 cut(s) 386, 675
BshNI GGYRCC 1 cut(s) 558
BsmAI GTCTC 1 cut(s) 179
BsmBI CGTCTC 1 cut(s) 179
BsmI GAATGC 1 cut(s) 869
BsnI GGCC 2 cut(s) 386, 675
Bsp143I GATC 3 cut(s) 109, 148, 232
BspACI CCGC 3 cut(s) 155, 584, 641
BspANI GGCC 2 cut(s) 386, 675
BspFNI CGCG 1 cut(s) 584
BspLI GGNNCC 1 cut(s) 560
BspT107I GGYRCC 1 cut(s) 558
BsrDI GCAATG 3 cut(s) 587, 605, 780
BsrI ACTGG 2 cut(s) 52, 380
BssECI CCNNGG 3 cut(s) 267, 566, 750
BssMI GATC 3 cut(s) 109, 148, 232
BssT1I CCWWGG 2 cut(s) 267, 566
Bst2UI CCWGG 3 cut(s) 392, 579, 819
Bst4CI ACNGT 6 cut(s) 20, 167, 527, 558, 790, 814
Bst6I CTCTTC 1 cut(s) 467
BstAPI GCANNNNNTGC 2 cut(s) 791, 875
BstC8I GCNNGC 2 cut(s) 129, 845
BstDEI CTNAG 1 cut(s) 427
BstF5I GGATG 2 cut(s) 387, 400
BstFNI CGCG 1 cut(s) 584
BstHHI GCGC 1 cut(s) 584
BstKTI GATC 3 cut(s) 112, 151, 235
BstMAI GTCTC 1 cut(s) 179
BstMBI GATC 3 cut(s) 109, 148, 232
BstMWI GCNNNNNNNGC 4 cut(s) 782, 791, 806, 875
BstNI CCWGG 3 cut(s) 392, 579, 819
BstNSI RCATGY 1 cut(s) 552
BstSCI CCNGG 3 cut(s) 390, 577, 817
BstSFI CTRYAG 1 cut(s) 122
BstUI CGCG 1 cut(s) 584
BstV1I GCAGC 4 cut(s) 65, 341, 529, 785
BsuRI GGCC 2 cut(s) 386, 675
BtsCI GGATG 2 cut(s) 387, 400
BtsIMutI CAGTG 3 cut(s) 387, 532, 880
Cac8I GCNNGC 2 cut(s) 129, 845
CaiI CAGNNNCTG 1 cut(s) 812
CfoI GCGC 1 cut(s) 584
CseI GACGC 1 cut(s) 491
Csp6I GTAC 3 cut(s) 21, 559, 815
CviAII CATG 5 cut(s) 152, 452, 549, 637, 759
CviJI RGCY 9 cut(s) 78, 131, 386, 495, 571, 675, 739, 776, 847
CviKI_1 RGCY 9 cut(s) 78, 131, 386, 495, 571, 675, 739, 776, 847
CviQI GTAC 3 cut(s) 21, 559, 815
DdeI CTNAG 1 cut(s) 427
DpnI GATC 3 cut(s) 111, 150, 234
DpnII GATC 3 cut(s) 109, 148, 232
EaeI YGGCCR 1 cut(s) 384
Eam1104I CTCTTC 1 cut(s) 467
EarI CTCTTC 1 cut(s) 467
Eco130I CCWWGG 2 cut(s) 267, 566
Eco57I CTGAAG 2 cut(s) 452, 789
EcoRII CCWGG 3 cut(s) 390, 577, 817
EcoT14I CCWWGG 2 cut(s) 267, 566
ErhI CCWWGG 2 cut(s) 267, 566
Esp3I CGTCTC 1 cut(s) 179
FaeI CATG 5 cut(s) 155, 455, 552, 640, 762
FatI CATG 5 cut(s) 151, 451, 548, 636, 758
FbaI TGATCA 2 cut(s) 148, 232
Fnu4HI GCNGC 7 cut(s) 79, 156, 330, 543, 585, 641, 774
FokI GGATG 2 cut(s) 374, 407
Fsp4HI GCNGC 7 cut(s) 79, 156, 330, 543, 585, 641, 774
FspBI CTAG 2 cut(s) 368, 896
GlaI GCGC 1 cut(s) 583
GluI GCNGC 7 cut(s) 79, 156, 330, 543, 585, 641, 774
GsaI CCCAGC 1 cut(s) 78
HaeIII GGCC 2 cut(s) 386, 675
HgaI GACGC 1 cut(s) 491
HhaI GCGC 1 cut(s) 584
Hin1II CATG 5 cut(s) 155, 455, 552, 640, 762
Hin6I GCGC 1 cut(s) 582
HinP1I GCGC 1 cut(s) 582
HincII GTYRAC 2 cut(s) 16, 400
HindII GTYRAC 2 cut(s) 16, 400
HindIII AAGCTT 1 cut(s) 129
HinfI GANTC 3 cut(s) 401, 755, 829
HphI GGTGA 3 cut(s) 126, 306, 874
Hpy166II GTNNAC 4 cut(s) 16, 400, 457, 554
Hpy188I TCNGA 5 cut(s) 148, 237, 406, 471, 754
Hpy8I GTNNAC 4 cut(s) 16, 400, 457, 554
HpyAV CCTTC 4 cut(s) 246, 512, 719, 889
HpyCH4III ACNGT 6 cut(s) 20, 167, 527, 558, 790, 814
HpyCH4V TGCA 8 cut(s) 81, 329, 530, 592, 598, 773, 785, 794
HpyF10VI GCNNNNNNNGC 4 cut(s) 782, 791, 806, 875
HpyF3I CTNAG 1 cut(s) 427
Hsp92II CATG 5 cut(s) 155, 455, 552, 640, 762
HspAI GCGC 1 cut(s) 582
KpnI GGTACC 1 cut(s) 562
Ksp22I TGATCA 2 cut(s) 148, 232
Kzo9I GATC 3 cut(s) 109, 148, 232
Lsp1109I GCAGC 4 cut(s) 65, 341, 529, 785
LweI GCATC 1 cut(s) 652
MaeI CTAG 2 cut(s) 368, 896
MaeIII GTNAC 4 cut(s) 312, 343, 521, 647
MalI GATC 3 cut(s) 111, 150, 234
MboI GATC 3 cut(s) 109, 148, 232
MboII GAAGA 6 cut(s) 104, 187, 292, 455, 458, 484
MlsI TGGCCA 1 cut(s) 386
MluCI AATT 5 cut(s) 8, 214, 324, 374, 849
MluNI TGGCCA 1 cut(s) 386
MlyI GAGTC 1 cut(s) 395
MmeI TCCRAC 1 cut(s) 489
MnlI CCTC 6 cut(s) 211, 266, 665, 760, 788, 815
Mox20I TGGCCA 1 cut(s) 386
MscI TGGCCA 1 cut(s) 386
MseI TTAA 2 cut(s) 162, 323
Msp20I TGGCCA 1 cut(s) 386
MspA1I CMGCKG 1 cut(s) 78
MspR9I CCNGG 3 cut(s) 392, 579, 819
Mva1269I GAATGC 1 cut(s) 869
MvaI CCWGG 3 cut(s) 392, 579, 819
MvnI CGCG 1 cut(s) 584
MwoI GCNNNNNNNGC 4 cut(s) 782, 791, 806, 875
NdeII GATC 3 cut(s) 109, 148, 232
NlaIII CATG 5 cut(s) 155, 455, 552, 640, 762
NlaIV GGNNCC 1 cut(s) 560
NmuCI GTSAC 1 cut(s) 312
NspI RCATGY 1 cut(s) 552
PciI ACATGT 1 cut(s) 548
PctI GAATGC 1 cut(s) 869
PfeI GAWTC 2 cut(s) 755, 829
PfoI TCCNGGA 1 cut(s) 390
PkrI GCNGC 7 cut(s) 80, 157, 331, 544, 586, 642, 775
PleI GAGTC 1 cut(s) 395
PpsI GAGTC 1 cut(s) 395
PscI ACATGT 1 cut(s) 548
PsiI TTATAA 1 cut(s) 719
Psp6I CCWGG 3 cut(s) 390, 577, 817
PspFI CCCAGC 1 cut(s) 74
PspGI CCWGG 3 cut(s) 390, 577, 817
PspN4I GGNNCC 1 cut(s) 560
PstNI CAGNNNCTG 1 cut(s) 812
PvuII CAGCTG 1 cut(s) 78
RsaI GTAC 3 cut(s) 22, 560, 816
RsaNI GTAC 3 cut(s) 21, 559, 815
SaqAI TTAA 2 cut(s) 162, 323
SatI GCNGC 7 cut(s) 79, 156, 330, 543, 585, 641, 774
Sau3AI GATC 3 cut(s) 109, 148, 232
SchI GAGTC 1 cut(s) 395
ScrFI CCNGG 3 cut(s) 392, 579, 819
SetI ASST 7 cut(s) 80, 133, 277, 319, 523, 568, 752
SfaNI GCATC 1 cut(s) 652
SfcI CTRYAG 1 cut(s) 122
SpeI ACTAGT 1 cut(s) 895
Sse9I AATT 5 cut(s) 8, 214, 324, 374, 849
SsiI CCGC 3 cut(s) 155, 584, 641
SspMI CTAG 2 cut(s) 368, 896
StyD4I CCNGG 3 cut(s) 390, 577, 817
StyI CCWWGG 2 cut(s) 267, 566
TaaI ACNGT 6 cut(s) 20, 167, 527, 558, 790, 814
TaqI TCGA 1 cut(s) 40
TasI AATT 5 cut(s) 8, 214, 324, 374, 849
TauI GCSGC 3 cut(s) 158, 587, 643
TfiI GAWTC 2 cut(s) 755, 829
Tru1I TTAA 2 cut(s) 162, 323
Tru9I TTAA 2 cut(s) 162, 323
TscAI CASTG 3 cut(s) 387, 532, 880
TseFI GTSAC 1 cut(s) 312
TseI GCWGC 4 cut(s) 78, 329, 542, 773
Tsp45I GTSAC 1 cut(s) 312
TspDTI ATGAA 5 cut(s) 17, 21, 255, 685, 879
TspRI CASTG 3 cut(s) 387, 532, 880
XapI RAATTY 1 cut(s) 374
XceI RCATGY 1 cut(s) 552
XspI CTAG 2 cut(s) 368, 896
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.