Rorug04G0126300

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0001790
Physical Location & Seq
Reverse (-)
20069149 .. 20069956
808 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0126300.1

Sequence Viewer

Length: 597 bp
ATGGAGCTACAAACCCAGCAACAAATCGAGGATGGAGGAAACAACCAAGCAGCCGGGAGTAGTGCCAACACAGATTTCTGGCGAAGCCGTGCCAGGTGGGTTCCTACTCCAGATCAAATAAGGATCCTCAGGGATCTTTACTACGACAAGGGAGTTAAGACCCCAACTACAGAGCAGATTCACGAGAACTGTCTCCAGCTGCAACAGTATGGACAGGTTGAGGGCAAGAACATTTATTTTTGGTTCCAGAATGTCAGGGCTCGAGAGAAGCAGATGAAGAGGTGCAATCAGGCTGCTCAAGTGCCCATGGGAACTAGTTCTCTTGGTACTGGTGGATCCATTGATCTCAATTTTGGGTCCACTGGTTCTACTGGTGCTGGAGGACAAACATCCCTGCAACAACGAGGAGGAGATCACCAGGAGGTTGAAACTCTTCCTCTGTTCCCCGTGCACGGCGAGGACGTCTTTGGTAACCCGAAGGCTACTTCCGAGGAAGGTAGCGCATTTGGTTACTATTCTGGTGGCTCAGGTGGTTACAACAGTGGCTCTAACGTTTCTCTTGAGCTCAGCCTCAATCCATCCGGAGCTGCTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001508 GO:0002027 GO:0003008 GO:0003012 GO:0003013 GO:0003015 GO:0003205 GO:0003230 GO:0003279 GO:0003283 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006873 GO:0006874 GO:0006875 GO:0006888 GO:0006928 GO:0006936 GO:0006937 GO:0006941 GO:0006942 GO:0007009 GO:0007154 GO:0007165 GO:0007267 GO:0007275 GO:0007507 GO:0008015 GO:0008016 GO:0008092 GO:0008104 GO:0008150 GO:0009893 GO:0009987 GO:0010256 GO:0010468 GO:0010522 GO:0010604 GO:0010628 GO:0010646 GO:0010880 GO:0010881 GO:0010882 GO:0010959 GO:0014704 GO:0016020 GO:0016043 GO:0016192 GO:0016323 GO:0019222 GO:0019722 GO:0019725 GO:0019899 GO:0019900 GO:0019901 GO:0019932 GO:0022898 GO:0023051 GO:0023052 GO:0030001 GO:0030003 GO:0030016 GO:0030017 GO:0030018 GO:0030029 GO:0030048 GO:0030054 GO:0030154 GO:0030315 GO:0030507 GO:0030674 GO:0031430 GO:0031647 GO:0031672 GO:0031674 GO:0032409 GO:0032411 GO:0032412 GO:0032414 GO:0032501 GO:0032502 GO:0032879 GO:0032970 GO:0033036 GO:0033292 GO:0033365 GO:0034394 GO:0034613 GO:0034762 GO:0034764 GO:0034765 GO:0034767 GO:0035556 GO:0035637 GO:0036309 GO:0036371 GO:0042383 GO:0042391 GO:0042592 GO:0042692 GO:0043034 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043266 GO:0043268 GO:0043269 GO:0043270 GO:0043292 GO:0044057 GO:0044093 GO:0044291 GO:0044325 GO:0044422 GO:0044424 GO:0044425 GO:0044444 GO:0044449 GO:0044459 GO:0044464 GO:0046907 GO:0048193 GO:0048468 GO:0048513 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050821 GO:0050896 GO:0051049 GO:0051050 GO:0051117 GO:0051179 GO:0051234 GO:0051239 GO:0051270 GO:0051279 GO:0051282 GO:0051641 GO:0051649 GO:0051716 GO:0051899 GO:0051924 GO:0051928 GO:0055001 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0055117 GO:0060047 GO:0060048 GO:0060090 GO:0060255 GO:0060306 GO:0060307 GO:0060341 GO:0061024 GO:0061061 GO:0061337 GO:0065007 GO:0065008 GO:0065009 GO:0070252 GO:0070296 GO:0070727 GO:0070838 GO:0070972 GO:0071840 GO:0071944 GO:0072359 GO:0072503 GO:0072507 GO:0072511 GO:0072657 GO:0072659 GO:0086001 GO:0086002 GO:0086003 GO:0086004 GO:0086005 GO:0086010 GO:0086012 GO:0086014 GO:0086015 GO:0086018 GO:0086019 GO:0086026 GO:0086046 GO:0086065 GO:0086066 GO:0086070 GO:0086091 GO:0090257 GO:0098590 GO:0098771 GO:0098900 GO:0098901 GO:0098907 GO:0098910 GO:0099080 GO:0099081 GO:0099512 GO:0099623 GO:1901016 GO:1901018 GO:1901019 GO:1901021 GO:1901379 GO:1901381 GO:1903115 GO:1903169 GO:1903522 GO:1903779 GO:1904062 GO:1904064 GO:1904427 GO:1990778 GO:2001257 GO:2001259
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 PGG

Protein Analysis

198

Amino Acids

21.42

Weight (kDa)

5.07

Isoelectric Point (pI)

44.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 30 - 91 4.6e-08 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 465
AccIII TCCGGA 1 cut(s) 581
AclI AACGTT 1 cut(s) 552
AclWI GGATC 5 cut(s) 118, 131, 141, 330, 343
AcyI GRCGYC 1 cut(s) 462
AfaI GTAC 1 cut(s) 328
AfiI CCNNNNNNNGG 1 cut(s) 452
AgsI TTSAA 1 cut(s) 428
AhlI ACTAGT 1 cut(s) 314
AjnI CCWGG 2 cut(s) 92, 417
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AluBI AGCT 4 cut(s) 7, 199, 565, 587
AluI AGCT 4 cut(s) 7, 199, 565, 587
Alw21I GWGCWC 2 cut(s) 453, 567
Alw26I GTCTC 1 cut(s) 197
Alw44I GTGCAC 1 cut(s) 449
AlwI GGATC 5 cut(s) 118, 131, 141, 330, 343
Ama87I CYCGRG 1 cut(s) 261
Aor13HI TCCGGA 1 cut(s) 581
ApaLI GTGCAC 1 cut(s) 449
ApeKI GCWGC 4 cut(s) 50, 199, 293, 587
Asp700I GAANNNNTTC 2 cut(s) 316, 432
AspLEI GCGC 1 cut(s) 503
AspS9I GGNCC 1 cut(s) 357
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 1 cut(s) 407
AvaI CYCGRG 1 cut(s) 261
AvaII GGWCC 1 cut(s) 357
AxyI CCTNAGG 1 cut(s) 128
BaeGI GKGCMC 2 cut(s) 306, 453
BamHI GGATCC 2 cut(s) 123, 335
BanII GRGCYC 2 cut(s) 262, 567
BauI CACGAG 1 cut(s) 182
Bbv12I GWGCWC 2 cut(s) 453, 567
BbvI GCAGC 4 cut(s) 62, 186, 280, 574
BccI CCATC 2 cut(s) 26, 586
BceAI ACGGC 2 cut(s) 72, 469
BciT130I CCWGG 2 cut(s) 94, 419
BcnI CCSGG 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 197
BcuI ACTAGT 1 cut(s) 314
BfaI CTAG 2 cut(s) 315, 595
BfmI CTRYAG 1 cut(s) 168
BisI GCNGC 4 cut(s) 51, 200, 294, 588
BlpI GCTNAGC 1 cut(s) 566
BlsI GCNGC 4 cut(s) 52, 201, 295, 589
Bme1390I CCNGG 3 cut(s) 55, 94, 419
Bme18I GGWCC 1 cut(s) 357
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 1 cut(s) 357
BmiI GGNNCC 5 cut(s) 102, 125, 245, 337, 358
BmrFI CCNGG 3 cut(s) 55, 94, 419
BpmI CTGGAG 3 cut(s) 93, 179, 399
Bpu10I CCTNAGC 1 cut(s) 526
Bpu1102I GCTNAGC 1 cut(s) 566
BpuEI CTTGAG 2 cut(s) 282, 581
BpuMI CCSGG 1 cut(s) 55
BsaHI GRCGYC 1 cut(s) 462
BsaJI CCNNGG 2 cut(s) 306, 489
BsaWI WCCGGW 1 cut(s) 581
Bsc4I CCNNNNNNNGG 1 cut(s) 452
Bse1I ACTGG 3 cut(s) 334, 367, 376
Bse21I CCTNAGG 1 cut(s) 128
BseAI TCCGGA 1 cut(s) 581
BseBI CCWGG 2 cut(s) 94, 419
BseDI CCNNGG 2 cut(s) 306, 489
BseGI GGATG 3 cut(s) 37, 389, 578
BseLI CCNNNNNNNGG 1 cut(s) 452
BseMII CTCAG 3 cut(s) 142, 540, 580
BseNI ACTGG 3 cut(s) 334, 367, 376
BseRI GAGGAG 2 cut(s) 420, 423
BseSI GKGCMC 2 cut(s) 306, 453
BseXI GCAGC 4 cut(s) 62, 186, 280, 574
BseYI CCCAGC 1 cut(s) 15
BsiHKAI GWGCWC 2 cut(s) 453, 567
BsiHKCI CYCGRG 1 cut(s) 261
BsiSI CCGG 2 cut(s) 54, 582
BslI CCNNNNNNNGG 1 cut(s) 452
BsmAI GTCTC 1 cut(s) 197
BsoBI CYCGRG 1 cut(s) 261
Bsp1286I GDGCHC 4 cut(s) 262, 306, 453, 567
Bsp13I TCCGGA 1 cut(s) 581
Bsp143I GATC 6 cut(s) 112, 123, 133, 335, 343, 412
Bsp1720I GCTNAGC 1 cut(s) 566
Bsp19I CCATGG 1 cut(s) 306
BspCNI CTCAG 3 cut(s) 141, 539, 579
BspEI TCCGGA 1 cut(s) 581
BspLI GGNNCC 5 cut(s) 102, 125, 245, 337, 358
BspPI GGATC 5 cut(s) 118, 131, 141, 330, 343
BsrI ACTGG 3 cut(s) 334, 367, 376
BssECI CCNNGG 2 cut(s) 306, 489
BssMI GATC 6 cut(s) 112, 123, 133, 335, 343, 412
BssNI GRCGYC 1 cut(s) 462
BssSI CACGAG 1 cut(s) 182
BssT1I CCWWGG 1 cut(s) 306
Bst2BI CACGAG 1 cut(s) 182
Bst2UI CCWGG 2 cut(s) 94, 419
Bst4CI ACNGT 3 cut(s) 191, 207, 542
Bst6I CTCTTC 2 cut(s) 272, 438
BstACI GRCGYC 1 cut(s) 462
BstDEI CTNAG 3 cut(s) 128, 526, 566
BstDSI CCRYGG 1 cut(s) 306
BstEII GGTNACC 1 cut(s) 470
BstF5I GGATG 3 cut(s) 37, 389, 578
BstHHI GCGC 1 cut(s) 503
BstKTI GATC 6 cut(s) 115, 126, 136, 338, 346, 415
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 6 cut(s) 112, 123, 133, 335, 343, 412
BstNI CCWGG 2 cut(s) 94, 419
BstPI GGTNACC 1 cut(s) 470
BstSCI CCNGG 3 cut(s) 53, 92, 417
BstSFI CTRYAG 1 cut(s) 168
BstSLI GKGCMC 2 cut(s) 306, 453
BstV1I GCAGC 4 cut(s) 62, 186, 280, 574
BstX2I RGATCY 3 cut(s) 123, 133, 335
BstYI RGATCY 3 cut(s) 123, 133, 335
Bsu36I CCTNAGG 1 cut(s) 128
BtgI CCRYGG 1 cut(s) 306
BtsCI GGATG 3 cut(s) 37, 389, 578
BtsIMutI CAGTG 2 cut(s) 360, 547
CfoI GCGC 1 cut(s) 503
Cfr13I GGNCC 1 cut(s) 357
Csp6I GTAC 1 cut(s) 327
CviAII CATG 1 cut(s) 307
CviQI GTAC 1 cut(s) 327
DdeI CTNAG 3 cut(s) 128, 526, 566
DpnI GATC 6 cut(s) 114, 125, 135, 337, 345, 414
DpnII GATC 6 cut(s) 112, 123, 133, 335, 343, 412
Eam1104I CTCTTC 2 cut(s) 272, 438
EarI CTCTTC 2 cut(s) 272, 438
Ecl136II GAGCTC 1 cut(s) 565
Eco130I CCWWGG 1 cut(s) 306
Eco24I GRGCYC 2 cut(s) 262, 567
Eco47I GGWCC 1 cut(s) 357
Eco53kI GAGCTC 1 cut(s) 565
Eco81I CCTNAGG 1 cut(s) 128
Eco88I CYCGRG 1 cut(s) 261
Eco91I GGTNACC 1 cut(s) 470
EcoICRI GAGCTC 1 cut(s) 565
EcoO65I GGTNACC 1 cut(s) 470
EcoRII CCWGG 2 cut(s) 92, 417
EcoT14I CCWWGG 1 cut(s) 306
EcoT38I GRGCYC 2 cut(s) 262, 567
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 1 cut(s) 310
FaiI YATR 2 cut(s) 210, 308
FatI CATG 1 cut(s) 306
Fnu4HI GCNGC 4 cut(s) 51, 200, 294, 588
FokI GGATG 3 cut(s) 44, 376, 565
FriOI GRGCYC 2 cut(s) 262, 567
Fsp4HI GCNGC 4 cut(s) 51, 200, 294, 588
FspBI CTAG 2 cut(s) 315, 595
GlaI GCGC 1 cut(s) 502
GluI GCNGC 4 cut(s) 51, 200, 294, 588
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 3 cut(s) 93, 179, 399
HapII CCGG 2 cut(s) 54, 582
HhaI GCGC 1 cut(s) 503
Hin1I GRCGYC 1 cut(s) 462
Hin1II CATG 1 cut(s) 310
Hin6I GCGC 1 cut(s) 501
HinP1I GCGC 1 cut(s) 501
HinfI GANTC 1 cut(s) 178
HpaII CCGG 2 cut(s) 54, 582
HphI GGTGA 1 cut(s) 407
Hpy166II GTNNAC 2 cut(s) 360, 451
Hpy188I TCNGA 1 cut(s) 490
Hpy188III TCNNGA 6 cut(s) 110, 182, 247, 263, 560, 582
Hpy8I GTNNAC 2 cut(s) 360, 451
HpyAV CCTTC 2 cut(s) 472, 488
HpyCH4III ACNGT 3 cut(s) 191, 207, 542
HpyCH4IV ACGT 2 cut(s) 462, 552
HpyCH4V TGCA 4 cut(s) 202, 285, 397, 451
HpyF3I CTNAG 3 cut(s) 128, 526, 566
HpySE526I ACGT 2 cut(s) 462, 552
Hsp92I GRCGYC 1 cut(s) 462
Hsp92II CATG 1 cut(s) 310
HspAI GCGC 1 cut(s) 501
Kpn2I TCCGGA 1 cut(s) 581
Kzo9I GATC 6 cut(s) 112, 123, 133, 335, 343, 412
LmnI GCTCC 2 cut(s) 4, 584
Lsp1109I GCAGC 4 cut(s) 62, 186, 280, 574
MaeI CTAG 2 cut(s) 315, 595
MaeII ACGT 2 cut(s) 462, 552
MaeIII GTNAC 3 cut(s) 470, 509, 533
MalI GATC 6 cut(s) 114, 125, 135, 337, 345, 414
MboI GATC 6 cut(s) 112, 123, 133, 335, 343, 412
MboII GAAGA 2 cut(s) 289, 425
MflI RGATCY 3 cut(s) 123, 133, 335
MhlI GDGCHC 4 cut(s) 262, 306, 453, 567
MluCI AATT 1 cut(s) 349
MroI TCCGGA 1 cut(s) 581
MroXI GAANNNNTTC 2 cut(s) 316, 432
MseI TTAA 1 cut(s) 156
MspA1I CMGCKG 1 cut(s) 199
MspI CCGG 2 cut(s) 54, 582
MspR9I CCNGG 3 cut(s) 55, 94, 419
MvaI CCWGG 2 cut(s) 94, 419
NciI CCSGG 1 cut(s) 55
NcoI CCATGG 1 cut(s) 306
NdeII GATC 6 cut(s) 112, 123, 133, 335, 343, 412
NlaIII CATG 1 cut(s) 310
NlaIV GGNNCC 5 cut(s) 102, 125, 245, 337, 358
PaeR7I CTCGAG 1 cut(s) 261
PcsI WCGNNNNNNNCGW 1 cut(s) 459
PdmI GAANNNNTTC 2 cut(s) 316, 432
PfeI GAWTC 1 cut(s) 178
PkrI GCNGC 4 cut(s) 52, 201, 295, 589
Psp124BI GAGCTC 1 cut(s) 567
Psp1406I AACGTT 1 cut(s) 552
Psp6I CCWGG 2 cut(s) 92, 417
PspEI GGTNACC 1 cut(s) 470
PspFI CCCAGC 1 cut(s) 15
PspGI CCWGG 2 cut(s) 92, 417
PspN4I GGNNCC 5 cut(s) 102, 125, 245, 337, 358
PspPI GGNCC 1 cut(s) 357
PsuI RGATCY 3 cut(s) 123, 133, 335
PvuII CAGCTG 1 cut(s) 199
RsaI GTAC 1 cut(s) 328
RsaNI GTAC 1 cut(s) 327
SacI GAGCTC 1 cut(s) 567
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 4 cut(s) 51, 200, 294, 588
Sau3AI GATC 6 cut(s) 112, 123, 133, 335, 343, 412
Sau96I GGNCC 1 cut(s) 357
ScrFI CCNGG 3 cut(s) 55, 94, 419
SduI GDGCHC 4 cut(s) 262, 306, 453, 567
SfcI CTRYAG 1 cut(s) 168
Sfr274I CTCGAG 1 cut(s) 261
SinI GGWCC 1 cut(s) 357
SlaI CTCGAG 1 cut(s) 261
SmlI CTYRAG 3 cut(s) 261, 297, 560
SmoI CTYRAG 3 cut(s) 261, 297, 560
SpeI ACTAGT 1 cut(s) 314
Sse9I AATT 1 cut(s) 349
SspMI CTAG 2 cut(s) 315, 595
SstI GAGCTC 1 cut(s) 567
StyD4I CCNGG 3 cut(s) 53, 92, 417
StyI CCWWGG 1 cut(s) 306
TaaI ACNGT 3 cut(s) 191, 207, 542
TaiI ACGT 2 cut(s) 465, 555
TaqI TCGA 2 cut(s) 27, 262
TasI AATT 1 cut(s) 349
TfiI GAWTC 1 cut(s) 178
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TscAI CASTG 2 cut(s) 367, 547
TseI GCWGC 4 cut(s) 50, 199, 293, 587
TspDTI ATGAA 1 cut(s) 290
TspRI CASTG 2 cut(s) 367, 547
VneI GTGCAC 1 cut(s) 449
VpaK11BI GGWCC 1 cut(s) 357
XhoI CTCGAG 1 cut(s) 261
XmnI GAANNNNTTC 2 cut(s) 316, 432
XspI CTAG 2 cut(s) 315, 595
ZraI GACGTC 1 cut(s) 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.