Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002025

Physical Location & Seq

Genomic Coordinates Reverse (-)

15833496 .. 15839469

Gene Structure 5974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17724

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2943 bp

ATGAGTTGCATTTGCAGGGATTGCTTGGGTGGCATGTCACCCGGGCCACGGCCACACTACCCCTCGCTGCCCCGATACCCGAAAGGCACGTCTCCAGAAGCAACGAGGAAGGCCAGGGGTTCTGAGGTGAAGGCCTTGTTCTCTGTGGTTGGAATGACATGTGCTGCCTGTGCCGGGTCTGTGGAGAAGGCGGTGAAGCGGCTCCCGGGGATACAGGAGGCCGCCGTGGACGTGTTGAATAACACAGCCCTTGTTCTCTACTATCCCAGCTTCGTCAATGAGGACAAAATATGTGAGGCTATTGAAGATGCTGGATTTGAAGCTAAACTGATTAAGTTGGAGATGAATGACAAAACCAGACAAGTATGCAGAATAAGCATAAGTGGAATGACTTGCACGTCTTGCTCCTCCACTGTTGAATCAGCTCTGCAAGCAATTTATGGAGTGCAAGGAGCTCAGGTGGCCTTAGCAACTGAAGAAGCAGAGATTCATTATGACCCAAGCATTGTTACCTCCCATCAGCTATTGGAAACCATAGAAATCACCGGATTCGAAGCCAAACTTATTAGTTTAGGGGAAGGCATTAGCAAGATAGAGCTTCAAGTTGATGGCATAAAGGTTGGACAGTCGATTAGAGCAATAGCAAATACTCTTGAAGCACTTCCTGGGGTTCAAGACATAGAGACATTTCCTGAACTCAACAAGATTTCTATTTCTTATAAACCAGAGATGATAGGACCAAGAACCCTCATCGAAGCCATCGAATCATCAGGGTCCGCGCATTTCAAAGCAATGATATACCCGGAAGGAGAAGAAGACACTCATAGACAGAAGGAAATTAAGCAGTACTATAAATTCTTCTTATGGAGTTTGTTTTGTACAGTTCCTGTGTTTTTAACCTCCATGGTCTTGATGTATATTCCTGGAATTAAGAAGGTGTTGGATGTCAAAATTGTGAATAAGTTGAGTGTTGGTCAGATTCTGAGGTGGGAGTTGTCCACTCCTGTGCAGTTCATCATAGGCAAGAGGTTCTACATTGGAGCATACAAAGCATTGCGCCATGGTTCAGCTAATATGGATGTTTTGATTGCCTTGGGAACAAATGCAGCCTACTTCTACTCGGTCTACATAGTTTTAAGATCTGCAACCCATAAGGATTTCAAGGGTACAGATTTTTTTGAGACTAGTTCAATGCTTATTACATTCATCCTGTTAGGAAAGTATCTAGAGGTCTTGGCAAAAGGCAAGACATCTGAGGCCATTGCCAAGCTAATGGACTTGGCACCAGAAAAGGCAACACTGCTAACTTTGGGTGAGGAAGGAAATGTGATAAATGAACAAGAAATGGATAGCCGGTTGATACAAAAGAACGATCTGATTAAAGTTATTCCCGGTGCCAAAGTAGCTTGTGATGGTGTTGTTATGTGGGGACAAAGTCATGTGAATGAAAGCATGATAACTGGTGAAGCACGGCCAGTGACAAAAAAGAAGGATGATGCAGTTATTGGAGGCACCGTGAATGTGAATGGAGTGTTGCATATTAAGGCAACAAGAGTTGGGTCAGAGAGTGCTCTTTCACAGATTGTAAGGCTTGTCGAGTCTGCCCAGATGGCTAAAGCTCCTGTACAAAAGTTTGCTGATCGCATTTCCAAATACTTTGTGCCAGTGGTCATCACACTTTCATTTTCGACTTGGCTTGCCTGGTTCTTAGGAGGGAAGTTCCACAGGTATCCACGTTCTTGGATACCATCTTCAATCGATAGTTTTGAGCTTGCTCTTCAGTTTGGGATCTCTGTCATGGTCATTGCCTGCCCTTGTGCTTTAGGCCTAGCAACTCCTACAGCCGTTATGGTTGGTACAGGAGTTGGTGCATCTCAAGGTATACTGATCAAAGGCGGACATGCATTAGAGAGTGCGCATAAGGTGAACTGCATTGTGTTTGACAAGACAGGGACTCTCACAGTTGGGAAGCCAGTGGTTGTTAGCACCAAAATCTTTTACAAAATGCTACCTCAAGAATTCTATGAACTAGTTGCTGCAACTGAGGTAAACAGTGAGCACCCACTAGCCAAAGCTATTGTGGAATATGCCAAGAAAATCAGAGAAGATGAAGAGAATTCTACCTGGCCAGAAGCACAAAACTTTGCATCCCTTACCGGCCAAGGAGTGAAGGCAGTTGTTCGAAATAAGGAAATAACTGTAGGCAACAAGAGCTTAATGCTGGACATTAACATTGCGATTCCAGAGGAGGCTGAAGTTGCACTTGCACAAACTGAAGCATTGGCTCAAACTGGGATTTTAATAGCTGTAGATAACGAAATAGCAGGAATTATAGCCATATCTGATCCACTGAAACCTGGTGCTCGAGAAGTCATTTCCATACTTAAATCCATGGGAGTTAGAAGTATCATGGTTACAGGTGACAATTGGGGTACAGCCAATTCTATTGCCAAGGAAACTGAAATTGAGACGGTGATTGCAGAAGCCAAACCCCAGCACAAAGCTGAGAATATAAAAGATTTGCAGGCTTCAGGCTACACCGTGGCAATGGTGGGAGATGGGATCAATGACTCACCGGCACTTGTGGCAGCAGATGTTGGAATGGCAATTGGTGCTGGCACAGACATTGCGATCGAGGCAGCTGACATTGTTCTTATGAAGAGCAACTTGGAAGATGTTATAACAGCCATTGACCTTTCCCGGAAAACCTTTTCCCGTATTCGTCTGAACTACATTTGGGCATTGGGTTACAATGTGCTTGGAATCCCGATAGCTGCAGGGGTCCTTTTTCCTTCCACTAGGTTCAGATTACCACCATGGATTGCAGGAGCTGCAATGGCAGCATCCTCCGTTAGTGTTGTATGCTGTTCTCTGTTGTTGAAGAACTACAAGAGACCCAAGAAGTTGGATATCCTTGAGATACATGAAGTAAGGGTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0008150 GO:0008324 GO:0009636 GO:0010035 GO:0010038 GO:0010273 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046688 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061687 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0097501 GO:0098655 GO:0098660 GO:0098662 GO:0098754 GO:0099131 GO:0099132 GO:1990169

KEGG Pathways

Metabolic & Signaling

ko01524 ko04016 map01524 map04016

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

980

Amino Acids

106.2

Weight (kDa)

6.28

Isoelectric Point (pI)

39.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	47 - 107	7.1e-15	Heavy-metal-associated domain
HMA	PF00403	125 - 185	3e-12	Heavy-metal-associated domain
E1-E2_ATPase	PF00122	427 - 533	1.4e-25	P-type ATPase actuator domain
Hydrolase	PF00702	643 - 865	4.2e-34	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63440
fragaria_vesca	FvH4_5g02090 FvH4_5g02090 FvH4_5g02091 FvH4_5g02091 FvH4_5g02091 FvH4_5g02091
malus_domestica	MD06G1080800.v1.1 MD06G1080900.v1.1 MD14G1102600.v1.1
prunus_persica	Prupe.5G097900_v2.0.a1 Prupe.5G097900_v2.0.a1 Prupe.5G098000_v2.0.a1
pyrus_communis	pycom06g07780 pycom06g07790 pycom14g09890
rosa_chinensis	RchiOBHm_Chr7g0197781 RchiOBHm_Chr7g0198111 RchiOBHm_Chr7g0198141
rosa_laevigata	RLG00000003885 RLG00000003888 RLG00000019170
rosa_multiflora	Rmu_sc0000221.1_g000018 Rmu_sc0000221.1_g000030 Rmu_sc0006732.1_g000016
rosa_roxburghii	Rroxscaffold_3G00257940 Rroxscaffold_3G00257970 Rroxscaffold_3G00257990
rosa_rugosa	Rorug07G0045700 Rorug07G0045700 Rorug07G0045800 Rorug07G0045800 Rorug07G0045900
rosa_samantha	Rh7AG169100 Rh7AG169200 Rh7BG169900 Rh7BG172300 Rh7CG178600 Rh7CG178700 Rh7DG169200 Rh7DG171400 Rh7DG171800
rosa_wichuraiana	Rw7G014570 Rw7G014780 Rw7G014790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	720, 2681
AasI	GACNNNNNNGTC	1 cut(s)	397
Acc16I	TGCGCA	1 cut(s)	1917
AccB1I	GGYRCC	3 cut(s)	1282, 1394, 1511
AccI	GTMKAC	2 cut(s)	1125, 1882
AccII	CGCG	1 cut(s)	779
AciI	CCGC	5 cut(s)	191, 199, 222, 777, 1896
AclWI	GGATC	3 cut(s)	1796, 2339, 2570
AcoI	YGGCCR	4 cut(s)	50, 1472, 2126, 2158
AcsI	RAATTY	3 cut(s)	854, 2018, 2116
AcuI	CTGAAG	5 cut(s)	495, 1763, 2274, 2295, 2514
AfaI	GTAC	6 cut(s)	848, 880, 1168, 1626, 1858, 2434
AfiI	CCNNNNNNNGG	2 cut(s)	48, 174
AflIII	ACRYGT	2 cut(s)	158, 231
AhlI	ACTAGT	2 cut(s)	1184, 2029
AjiI	CACGTC	3 cut(s)	90, 232, 399
AjnI	CCWGG	6 cut(s)	113, 664, 922, 1700, 2123, 2356
AjuI	GAANNNNNNNTTGG	2 cut(s)	2651, 2683
AleI	CACNNNNGTG	1 cut(s)	1004
Alw21I	GWGCWC	4 cut(s)	457, 1573, 2061, 2365
Alw26I	GTCTC	5 cut(s)	96, 677, 1175, 2462, 2887
AlwI	GGATC	3 cut(s)	1796, 2339, 2570
AlwNI	CAGNNNCTG	3 cut(s)	887, 982, 2831
Ama87I	CYCGRG	3 cut(s)	41, 205, 2364
ApeKI	GCWGC	9 cut(s)	67, 164, 1106, 2036, 2588, 2639, 2774, 2831, 2840
ApoI	RAATTY	3 cut(s)	854, 2018, 2116
ArsI	GACNNNNNNTTYG	2 cut(s)	74, 106
Asp700I	GAANNNNTTC	1 cut(s)	660
AspLEI	GCGC	3 cut(s)	781, 1059, 1918
AspS9I	GGNCC	4 cut(s)	44, 737, 774, 2782
AsuC2I	CCSGG	8 cut(s)	42, 43, 175, 206, 207, 803, 1392, 2701
AsuII	TTCGAA	2 cut(s)	552, 2182
AvaI	CYCGRG	3 cut(s)	41, 205, 2364
AvaII	GGWCC	3 cut(s)	737, 774, 2782
BaeI	ACNNNNGTAYC	2 cut(s)	1848, 1881
BalI	TGGCCA	1 cut(s)	2128
BanI	GGYRCC	3 cut(s)	1282, 1394, 1511
BanII	GRGCYC	1 cut(s)	457
BbsI	GAAGAC	1 cut(s)	822
Bbv12I	GWGCWC	4 cut(s)	457, 1573, 2061, 2365
BbvI	GCAGC	9 cut(s)	54, 151, 1118, 2023, 2600, 2651, 2761, 2818, 2852
BccI	CCATC	7 cut(s)	525, 602, 767, 1406, 1603, 1756, 2552
BceAI	ACGGC	4 cut(s)	65, 209, 1487, 1829
BciT130I	CCWGG	6 cut(s)	115, 666, 924, 1702, 2125, 2358
BciVI	GTATCC	3 cut(s)	204, 1737, 1740
BclI	TGATCA	1 cut(s)	1887
BcnI	CCSGG	8 cut(s)	42, 43, 175, 206, 207, 803, 1392, 2701
BcoDI	GTCTC	5 cut(s)	96, 677, 1175, 2462, 2887
BcuI	ACTAGT	2 cut(s)	1184, 2029
BfaI	CTAG	6 cut(s)	1185, 1226, 1829, 2030, 2066, 2799
BfmI	CTRYAG	4 cut(s)	1839, 2199, 2307, 2775
BfuI	GTATCC	3 cut(s)	204, 1737, 1740
BglI	GCCNNNNNGGC	1 cut(s)	1610
BglII	AGATCT	1 cut(s)	1139
BmcAI	AGTACT	1 cut(s)	848
Bme18I	GGWCC	3 cut(s)	737, 774, 2782
BmeT110I	CYCGRG	3 cut(s)	41, 205, 2364
BmgBI	CACGTC	3 cut(s)	90, 232, 399
BmgT120I	GGNCC	4 cut(s)	44, 737, 774, 2782
BmiI	GGNNCC	6 cut(s)	203, 775, 1284, 1396, 1513, 2783
BmrI	ACTGGG	1 cut(s)	2301
BmsI	GCATC	5 cut(s)	298, 1486, 1880, 2156, 2852
BmuI	ACTGGG	1 cut(s)	2301
BpiI	GAAGAC	1 cut(s)	822
BpmI	CTGGAG	1 cut(s)	78
Bpu10I	CCTNAGC	2 cut(s)	456, 466
Bpu14I	TTCGAA	2 cut(s)	552, 2182
BpuEI	CTTGAG	3 cut(s)	1860, 1998, 2936
BpuMI	CCSGG	8 cut(s)	42, 43, 175, 206, 207, 803, 1392, 2701
Bsa29I	ATCGAT	1 cut(s)	1758
BsaI	GGTCTC	1 cut(s)	2887
BsaWI	WCCGGW	1 cut(s)	545
BsaXI	ACNNNNNCTCC	4 cut(s)	444, 474, 1500, 1530
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 174
Bse118I	RCCGGY	3 cut(s)	1353, 2156, 2575
Bse1I	ACTGG	5 cut(s)	1465, 1475, 1664, 1973, 2296
Bse3DI	GCAATG	8 cut(s)	798, 1052, 1260, 1803, 2232, 2553, 2625, 2841
BseBI	CCWGG	6 cut(s)	115, 666, 924, 1702, 2125, 2358
BseCI	ATCGAT	1 cut(s)	1758
BseGI	GGATG	6 cut(s)	949, 1084, 1206, 1498, 2147, 2843
BseLI	CCNNNNNNNGG	2 cut(s)	48, 174
BseMI	GCAATG	8 cut(s)	798, 1052, 1260, 1803, 2232, 2553, 2625, 2841
BseMII	CTCAG	6 cut(s)	114, 470, 974, 1245, 2034, 2496
BseNI	ACTGG	5 cut(s)	1465, 1475, 1664, 1973, 2296
BseRI	GAGGAG	2 cut(s)	397, 2261
BseXI	GCAGC	9 cut(s)	54, 151, 1118, 2023, 2600, 2651, 2761, 2818, 2852
BseYI	CCCAGC	2 cut(s)	266, 2493
BsgI	GTGCAG	1 cut(s)	1028
Bsh1236I	CGCG	1 cut(s)	779
Bsh1285I	CGRYCG	1 cut(s)	2634
BshNI	GGYRCC	3 cut(s)	1282, 1394, 1511
BshVI	ATCGAT	1 cut(s)	1758
BsiEI	CGRYCG	1 cut(s)	2634
BsiHKAI	GWGCWC	4 cut(s)	457, 1573, 2061, 2365
BsiHKCI	CYCGRG	3 cut(s)	41, 205, 2364
BslFI	GGGAC	2 cut(s)	1443, 1966
BslI	CCNNNNNNNGG	2 cut(s)	48, 174
BsmAI	GTCTC	5 cut(s)	96, 677, 1175, 2462, 2887
BsmBI	CGTCTC	2 cut(s)	96, 2462
BsmFI	GGGAC	2 cut(s)	1443, 1966
Bso31I	GGTCTC	1 cut(s)	2887
BsoBI	CYCGRG	3 cut(s)	41, 205, 2364
Bsp119I	TTCGAA	2 cut(s)	552, 2182
Bsp1286I	GDGCHC	4 cut(s)	457, 1573, 2061, 2365
Bsp1407I	TGTACA	2 cut(s)	878, 1624
Bsp143I	GATC	8 cut(s)	1139, 1372, 1639, 1788, 1887, 2344, 2562, 2631
Bsp19I	CCATGG	4 cut(s)	903, 1060, 2391, 2816
BspACI	CCGC	5 cut(s)	191, 199, 222, 777, 1896
BspCNI	CTCAG	6 cut(s)	115, 469, 975, 1246, 2035, 2497
BspDI	ATCGAT	1 cut(s)	1758
BspFNI	CGCG	1 cut(s)	779
BspLI	GGNNCC	6 cut(s)	203, 775, 1284, 1396, 1513, 2783
BspMAI	CTGCAG	1 cut(s)	2779
BspPI	GGATC	3 cut(s)	1796, 2339, 2570
BspQI	GCTCTTC	2 cut(s)	1782, 2654
BspT104I	TTCGAA	2 cut(s)	552, 2182
BspT107I	GGYRCC	3 cut(s)	1282, 1394, 1511
BspTNI	GGTCTC	1 cut(s)	2887
BsrDI	GCAATG	8 cut(s)	798, 1052, 1260, 1803, 2232, 2553, 2625, 2841
BsrFI	RCCGGY	3 cut(s)	1353, 2156, 2575
BsrGI	TGTACA	2 cut(s)	878, 1624
BsrI	ACTGG	5 cut(s)	1465, 1475, 1664, 1973, 2296
BssAI	RCCGGY	3 cut(s)	1353, 2156, 2575
BssMI	GATC	8 cut(s)	1139, 1372, 1639, 1788, 1887, 2344, 2562, 2631
BssNAI	GTATAC	1 cut(s)	1883
BssT1I	CCWWGG	7 cut(s)	903, 1060, 1092, 2161, 2391, 2451, 2816
Bst1107I	GTATAC	1 cut(s)	1883
Bst2UI	CCWGG	6 cut(s)	115, 666, 924, 1702, 2125, 2358
Bst4CI	ACNGT	9 cut(s)	415, 627, 883, 1516, 1963, 2054, 2200, 2473, 2542
Bst6I	CTCTTC	3 cut(s)	1782, 2106, 2654
BstAPI	GCANNNNNTGC	4 cut(s)	21, 402, 2612, 2831
BstAUI	TGTACA	2 cut(s)	878, 1624
BstBI	TTCGAA	2 cut(s)	552, 2182
BstC8I	GCNNGC	6 cut(s)	432, 1698, 1773, 1810, 2526, 2617
BstDEI	CTNAG	8 cut(s)	123, 456, 466, 983, 1254, 1708, 2043, 2505
BstDSI	CCRYGG	7 cut(s)	47, 225, 903, 1060, 2391, 2541, 2816
BstF5I	GGATG	6 cut(s)	949, 1084, 1206, 1498, 2147, 2843
BstFNI	CGCG	1 cut(s)	779
BstHHI	GCGC	3 cut(s)	781, 1059, 1918
BstKTI	GATC	8 cut(s)	1142, 1375, 1642, 1791, 1890, 2347, 2565, 2634
BstMAI	GTCTC	5 cut(s)	96, 677, 1175, 2462, 2887
BstMBI	GATC	8 cut(s)	1139, 1372, 1639, 1788, 1887, 2344, 2562, 2631
BstMCI	CGRYCG	1 cut(s)	2634
BstNI	CCWGG	6 cut(s)	115, 666, 924, 1702, 2125, 2358
BstNSI	RCATGY	3 cut(s)	37, 162, 1904
BstSFI	CTRYAG	4 cut(s)	1839, 2199, 2307, 2775
BstUI	CGCG	1 cut(s)	779
BstV1I	GCAGC	9 cut(s)	54, 151, 1118, 2023, 2600, 2651, 2761, 2818, 2852
BstV2I	GAAGAC	1 cut(s)	822
BstX2I	RGATCY	2 cut(s)	1139, 1788
BstXI	CCANNNNNNTGG	3 cut(s)	1273, 1740, 2905
BstYI	RGATCY	2 cut(s)	1139, 1788
BstZ17I	GTATAC	1 cut(s)	1883
Bsu15I	ATCGAT	1 cut(s)	1758
BsuI	GTATCC	3 cut(s)	204, 1737, 1740
BsuTUI	ATCGAT	1 cut(s)	1758
BtgI	CCRYGG	7 cut(s)	47, 225, 903, 1060, 2391, 2541, 2816
BtrI	CACGTC	3 cut(s)	90, 232, 399
BtsCI	GGATG	6 cut(s)	949, 1084, 1206, 1498, 2147, 2843
BtsI	GCAGTG	1 cut(s)	1298
BtsIMutI	CAGTG	7 cut(s)	411, 1298, 1482, 1671, 1980, 2059, 2348
Cac8I	GCNNGC	6 cut(s)	432, 1698, 1773, 1810, 2526, 2617
CaiI	CAGNNNCTG	3 cut(s)	887, 982, 2831
CfoI	GCGC	3 cut(s)	781, 1059, 1918
Cfr10I	RCCGGY	3 cut(s)	1353, 2156, 2575
Cfr13I	GGNCC	4 cut(s)	44, 737, 774, 2782
Cfr9I	CCCGGG	2 cut(s)	41, 205
ClaI	ATCGAT	1 cut(s)	1758
CsiI	ACCWGGT	1 cut(s)	2356
Csp6I	GTAC	6 cut(s)	847, 879, 1167, 1625, 1857, 2433
CviQI	GTAC	6 cut(s)	847, 879, 1167, 1625, 1857, 2433
DdeI	CTNAG	8 cut(s)	123, 456, 466, 983, 1254, 1708, 2043, 2505
DpnI	GATC	8 cut(s)	1141, 1374, 1641, 1790, 1889, 2346, 2564, 2633
DpnII	GATC	8 cut(s)	1139, 1372, 1639, 1788, 1887, 2344, 2562, 2631
DrdI	GACNNNNNNGTC	1 cut(s)	397
DseDI	GACNNNNNNGTC	1 cut(s)	397
EaeI	YGGCCR	4 cut(s)	50, 1472, 2126, 2158
Eam1104I	CTCTTC	3 cut(s)	1782, 2106, 2654
EarI	CTCTTC	3 cut(s)	1782, 2106, 2654
EciI	GGCGGA	1 cut(s)	1911
Ecl136II	GAGCTC	1 cut(s)	455
Eco130I	CCWWGG	7 cut(s)	903, 1060, 1092, 2161, 2391, 2451, 2816
Eco147I	AGGCCT	2 cut(s)	134, 1827
Eco24I	GRGCYC	1 cut(s)	457
Eco31I	GGTCTC	1 cut(s)	2887
Eco32I	GATATC	1 cut(s)	2911
Eco47I	GGWCC	3 cut(s)	737, 774, 2782
Eco53kI	GAGCTC	1 cut(s)	455
Eco57I	CTGAAG	5 cut(s)	495, 1763, 2274, 2295, 2514
Eco88I	CYCGRG	3 cut(s)	41, 205, 2364
EcoICRI	GAGCTC	1 cut(s)	455
EcoO109I	RGGNCCY	1 cut(s)	2782
EcoRI	GAATTC	2 cut(s)	2018, 2116
EcoRII	CCWGG	6 cut(s)	113, 664, 922, 1700, 2123, 2356
EcoRV	GATATC	1 cut(s)	2911
EcoT14I	CCWWGG	7 cut(s)	903, 1060, 1092, 2161, 2391, 2451, 2816
EcoT22I	ATGCAT	1 cut(s)	1906
EcoT38I	GRGCYC	1 cut(s)	457
ErhI	CCWWGG	7 cut(s)	903, 1060, 1092, 2161, 2391, 2451, 2816
Esp3I	CGTCTC	2 cut(s)	96, 2462
FalI	AAGNNNNNCTT	6 cut(s)	546, 578, 2247, 2279, 2651, 2683
FaqI	GGGAC	2 cut(s)	1443, 1966
FbaI	TGATCA	1 cut(s)	1887
FblI	GTMKAC	2 cut(s)	1125, 1882
FokI	GGATG	6 cut(s)	956, 1091, 1193, 1505, 2134, 2830
FriOI	GRGCYC	1 cut(s)	457
FspAI	RTGCGCAY	1 cut(s)	1917
FspBI	CTAG	6 cut(s)	1185, 1226, 1829, 2030, 2066, 2799
FspI	TGCGCA	1 cut(s)	1917
GlaI	GCGC	3 cut(s)	780, 1058, 1917
GsaI	CCCAGC	2 cut(s)	270, 2497
GsuI	CTGGAG	1 cut(s)	78
HhaI	GCGC	3 cut(s)	781, 1059, 1918
Hin6I	GCGC	3 cut(s)	779, 1057, 1916
HinP1I	GCGC	3 cut(s)	779, 1057, 1916
Hpy166II	GTNNAC	6 cut(s)	229, 999, 1126, 1883, 1927, 2050
Hpy8I	GTNNAC	6 cut(s)	229, 999, 1126, 1883, 1927, 2050
HpyCH4III	ACNGT	9 cut(s)	415, 627, 883, 1516, 1963, 2054, 2200, 2473, 2542
HpyCH4IV	ACGT	4 cut(s)	89, 231, 398, 1735
HpyF3I	CTNAG	8 cut(s)	123, 456, 466, 983, 1254, 1708, 2043, 2505
HpySE526I	ACGT	4 cut(s)	89, 231, 398, 1735
HspAI	GCGC	3 cut(s)	779, 1057, 1916
Ksp22I	TGATCA	1 cut(s)	1887
Kzo9I	GATC	8 cut(s)	1139, 1372, 1639, 1788, 1887, 2344, 2562, 2631
LguI	GCTCTTC	2 cut(s)	1782, 2654
LmnI	GCTCC	6 cut(s)	207, 410, 452, 1040, 1624, 2828
Lsp1109I	GCAGC	9 cut(s)	54, 151, 1118, 2023, 2600, 2651, 2761, 2818, 2852
LweI	GCATC	5 cut(s)	298, 1486, 1880, 2156, 2852
MabI	ACCWGGT	1 cut(s)	2356
MaeI	CTAG	6 cut(s)	1185, 1226, 1829, 2030, 2066, 2799
MaeII	ACGT	4 cut(s)	89, 231, 398, 1735
MaeIII	GTNAC	6 cut(s)	36, 508, 1477, 2413, 2420, 2747
MalI	GATC	8 cut(s)	1141, 1374, 1641, 1790, 1889, 2346, 2564, 2633
MboI	GATC	8 cut(s)	1139, 1372, 1639, 1788, 1887, 2344, 2562, 2631
MfeI	CAATTG	2 cut(s)	2425, 2607
MflI	RGATCY	2 cut(s)	1139, 1788
MhlI	GDGCHC	4 cut(s)	457, 1573, 2061, 2365
MlsI	TGGCCA	1 cut(s)	2128
MluNI	TGGCCA	1 cut(s)	2128
MlyI	GAGTC	3 cut(s)	1607, 1948, 2564
MmeI	TCCRAC	6 cut(s)	130, 318, 601, 921, 2578, 2886
Mox20I	TGGCCA	1 cut(s)	2128
Mph1103I	ATGCAT	1 cut(s)	1906
MroXI	GAANNNNTTC	1 cut(s)	660
MscI	TGGCCA	1 cut(s)	2128
MslI	CAYNNNNRTG	2 cut(s)	1004, 1443
Msp20I	TGGCCA	1 cut(s)	2128
MspA1I	CMGCKG	1 cut(s)	2642
MunI	CAATTG	2 cut(s)	2425, 2607
MvaI	CCWGG	6 cut(s)	115, 666, 924, 1702, 2125, 2358
MvnI	CGCG	1 cut(s)	779
NciI	CCSGG	8 cut(s)	42, 43, 175, 206, 207, 803, 1392, 2701
NcoI	CCATGG	4 cut(s)	903, 1060, 2391, 2816
NdeII	GATC	8 cut(s)	1139, 1372, 1639, 1788, 1887, 2344, 2562, 2631
NlaIV	GGNNCC	6 cut(s)	203, 775, 1284, 1396, 1513, 2783
NmuCI	GTSAC	3 cut(s)	36, 1477, 2420
NsbI	TGCGCA	1 cut(s)	1917
NsiI	ATGCAT	1 cut(s)	1906
NspI	RCATGY	3 cut(s)	37, 162, 1904
NspV	TTCGAA	2 cut(s)	552, 2182
OliI	CACNNNNGTG	1 cut(s)	1004
PaeR7I	CTCGAG	1 cut(s)	2364
PceI	AGGCCT	2 cut(s)	134, 1827
PciI	ACATGT	1 cut(s)	158
PciSI	GCTCTTC	2 cut(s)	1782, 2654
PcsI	WCGNNNNNNNCGW	1 cut(s)	759
PdmI	GAANNNNTTC	1 cut(s)	660
PfeI	GAWTC	7 cut(s)	419, 487, 549, 764, 979, 2239, 2763
PflFI	GACNNNGTC	1 cut(s)	1434
PfoI	TCCNGGA	2 cut(s)	922, 2699
Ple19I	CGATCG	1 cut(s)	2634
PleI	GAGTC	3 cut(s)	1606, 1948, 2564
PpsI	GAGTC	3 cut(s)	1606, 1948, 2564
PpuMI	RGGWCCY	1 cut(s)	2782
PscI	ACATGT	1 cut(s)	158
PsiI	TTATAA	2 cut(s)	720, 2681
Psp124BI	GAGCTC	1 cut(s)	457
Psp5II	RGGWCCY	1 cut(s)	2782
Psp6I	CCWGG	6 cut(s)	113, 664, 922, 1700, 2123, 2356
PspFI	CCCAGC	2 cut(s)	266, 2493
PspGI	CCWGG	6 cut(s)	113, 664, 922, 1700, 2123, 2356
PspN4I	GGNNCC	6 cut(s)	203, 775, 1284, 1396, 1513, 2783
PspPI	GGNCC	4 cut(s)	44, 737, 774, 2782
PspPPI	RGGWCCY	1 cut(s)	2782
PstI	CTGCAG	1 cut(s)	2779
PstNI	CAGNNNCTG	3 cut(s)	887, 982, 2831
PsuI	RGATCY	2 cut(s)	1139, 1788
PsyI	GACNNNGTC	1 cut(s)	1434
PvuI	CGATCG	1 cut(s)	2634
PvuII	CAGCTG	1 cut(s)	2642
RsaI	GTAC	6 cut(s)	848, 880, 1168, 1626, 1858, 2434
RsaNI	GTAC	6 cut(s)	847, 879, 1167, 1625, 1857, 2433
RseI	CAYNNNNRTG	2 cut(s)	1004, 1443
SacI	GAGCTC	1 cut(s)	457
SapI	GCTCTTC	2 cut(s)	1782, 2654
Sau3AI	GATC	8 cut(s)	1139, 1372, 1639, 1788, 1887, 2344, 2562, 2631
Sau96I	GGNCC	4 cut(s)	44, 737, 774, 2782
ScaI	AGTACT	1 cut(s)	848
SchI	GAGTC	3 cut(s)	1607, 1948, 2564
SduI	GDGCHC	4 cut(s)	457, 1573, 2061, 2365
SexAI	ACCWGGT	1 cut(s)	2356
SfaNI	GCATC	5 cut(s)	298, 1486, 1880, 2156, 2852
SfcI	CTRYAG	4 cut(s)	1839, 2199, 2307, 2775
Sfr274I	CTCGAG	1 cut(s)	2364
SfuI	TTCGAA	2 cut(s)	552, 2182
SinI	GGWCC	3 cut(s)	737, 774, 2782
SlaI	CTCGAG	1 cut(s)	2364
SmaI	CCCGGG	2 cut(s)	43, 207
SmiMI	CAYNNNNRTG	2 cut(s)	1004, 1443
SmlI	CTYRAG	4 cut(s)	1875, 2013, 2364, 2915
SmoI	CTYRAG	4 cut(s)	1875, 2013, 2364, 2915
SpeI	ACTAGT	2 cut(s)	1184, 2029
SseBI	AGGCCT	2 cut(s)	134, 1827
SsiI	CCGC	5 cut(s)	191, 199, 222, 777, 1896
SspMI	CTAG	6 cut(s)	1185, 1226, 1829, 2030, 2066, 2799
SstI	GAGCTC	1 cut(s)	457
StuI	AGGCCT	2 cut(s)	134, 1827
StyI	CCWWGG	7 cut(s)	903, 1060, 1092, 2161, 2391, 2451, 2816
TaaI	ACNGT	9 cut(s)	415, 627, 883, 1516, 1963, 2054, 2200, 2473, 2542
TaiI	ACGT	4 cut(s)	92, 234, 401, 1738
TaqII	GACCGA	1 cut(s)	1111
TatI	WGTACW	3 cut(s)	846, 878, 1624
TauI	GCSGC	2 cut(s)	202, 224
TfiI	GAWTC	7 cut(s)	419, 487, 549, 764, 979, 2239, 2763
TscAI	CASTG	7 cut(s)	418, 1305, 1482, 1671, 1980, 2059, 2355
TseFI	GTSAC	3 cut(s)	36, 1477, 2420
TseI	GCWGC	9 cut(s)	67, 164, 1106, 2036, 2588, 2639, 2774, 2831, 2840
Tsp45I	GTSAC	3 cut(s)	36, 1477, 2420
TspGWI	ACGGA	1 cut(s)	2839
TspMI	CCCGGG	2 cut(s)	41, 205
TspRI	CASTG	7 cut(s)	418, 1305, 1482, 1671, 1980, 2059, 2355
Tth111I	GACNNNGTC	1 cut(s)	1434
VpaK11BI	GGWCC	3 cut(s)	737, 774, 2782
XapI	RAATTY	3 cut(s)	854, 2018, 2116
XbaI	TCTAGA	1 cut(s)	1225
XceI	RCATGY	3 cut(s)	37, 162, 1904
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2077
XhoI	CTCGAG	1 cut(s)	2364
XmaI	CCCGGG	2 cut(s)	41, 205
XmiI	GTMKAC	2 cut(s)	1125, 1882
XmnI	GAANNNNTTC	1 cut(s)	660
XspI	CTAG	6 cut(s)	1185, 1226, 1829, 2030, 2066, 2799
ZrmI	AGTACT	1 cut(s)	848
Zsp2I	ATGCAT	1 cut(s)	1906

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.