Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002025

Physical Location & Seq

Genomic Coordinates Reverse (-)

3354396 .. 3357172

Gene Structure 2777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0045800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGAGTCGTTCCTCATCACCTCATCGCTCTCATGGTGGCAGTAACAATAGTAGCAGCAACGGCGAAGATAAGCCGCGATTCTTCGACCCAAAAGCAAAGAGCAAGTGCTGGGCAAACGCCGCAATAGTGCCAGGTCGACACCCTGAGCGGTGGCGCAAAGACGCCGCCGGCAACATTGTCTGCAAGCGCTTCTGCAATTGCCAGGGCTGCCTCTGCTTCGAGTACGATCACATACTCCCCTTTTCTAAAGGTGGTGAATCCGTAGCGGAAAACTGTCAGATTCTACAAACAAGAGTGAACAGATTCAAATCAAACAAAGAGCAGGTCGATGAGAATCAATTGAAAGGCTACTCTTGTGATGTCAAGTTTACAGATAAGGAGCTTGACATAATTGAAATGGCTGTTTACGGTGATGTGGTCCGGCCAGGAAACCAGTGCCGATGCAGAACTGTAGCCGAGATGCTTGGCCAGGTCAAGTCAAAAGACAAAACTGCCGCTTGCAAGTTGCCACATAGCAGTGAGGCTCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0008150 GO:0008324 GO:0009636 GO:0010035 GO:0010038 GO:0010273 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046688 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061687 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0097501 GO:0098655 GO:0098660 GO:0098662 GO:0098754 GO:0099131 GO:0099132 GO:1990169

KEGG Pathways

Metabolic & Signaling

ko01524 ko04016 map01524 map04016

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

176

Amino Acids

19.65

Weight (kDa)

8.87

Isoelectric Point (pI)

52.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63440
fragaria_vesca	FvH4_5g02090 FvH4_5g02090 FvH4_5g02091 FvH4_5g02091 FvH4_5g02091 FvH4_5g02091
malus_domestica	MD06G1080800.v1.1 MD06G1080900.v1.1 MD14G1102600.v1.1
prunus_persica	Prupe.5G097900_v2.0.a1 Prupe.5G097900_v2.0.a1 Prupe.5G098000_v2.0.a1
pyrus_communis	pycom06g07780 pycom06g07790 pycom14g09890
rosa_chinensis	RchiOBHm_Chr7g0197781 RchiOBHm_Chr7g0198111 RchiOBHm_Chr7g0198141
rosa_laevigata	RLG00000003885 RLG00000003888 RLG00000019170
rosa_multiflora	Rmu_sc0000221.1_g000018 Rmu_sc0000221.1_g000030 Rmu_sc0006732.1_g000016
rosa_roxburghii	Rroxscaffold_3G00257940 Rroxscaffold_3G00257970 Rroxscaffold_3G00257990
rosa_rugosa	Rorug07G0045700 Rorug07G0045700 Rorug07G0045800 Rorug07G0045800 Rorug07G0045900
rosa_samantha	Rh7AG169100 Rh7AG169200 Rh7BG169900 Rh7BG172300 Rh7CG178600 Rh7CG178700 Rh7DG169200 Rh7DG171400 Rh7DG171800
rosa_wichuraiana	Rw7G014570 Rw7G014780 Rw7G014790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	313
AccBSI	CCGCTC	1 cut(s)	148
AccI	GTMKAC	1 cut(s)	136
AccII	CGCG	1 cut(s)	76
AciI	CCGC	6 cut(s)	74, 120, 148, 165, 266, 495
AcoI	YGGCCR	2 cut(s)	422, 466
AcyI	GRCGYC	1 cut(s)	162
AfaI	GTAC	1 cut(s)	224
AfeI	AGCGCT	1 cut(s)	188
AgsI	TTSAA	3 cut(s)	307, 343, 395
AjnI	CCWGG	4 cut(s)	130, 201, 424, 468
AluBI	AGCT	1 cut(s)	382
AluI	AGCT	1 cut(s)	382
Aor51HI	AGCGCT	1 cut(s)	188
AoxI	GGCC	2 cut(s)	422, 466
ApeKI	GCWGC	2 cut(s)	54, 207
ArsI	GACNNNNNNTTYG	2 cut(s)	309, 341
Asp700I	GAANNNNTTC	1 cut(s)	302
AspLEI	GCGC	2 cut(s)	156, 189
AspS9I	GGNCC	1 cut(s)	418
AsuHPI	GGTGA	3 cut(s)	9, 266, 422
AvaII	GGWCC	1 cut(s)	418
BalI	TGGCCA	1 cut(s)	468
BbvI	GCAGC	2 cut(s)	66, 194
BceAI	ACGGC	1 cut(s)	76
BciT130I	CCWGG	4 cut(s)	132, 203, 426, 470
BfmI	CTRYAG	2 cut(s)	450, 527
BfoI	RGCGCY	1 cut(s)	190
BfuAI	ACCTGC	1 cut(s)	313
BisI	GCNGC	6 cut(s)	55, 74, 120, 165, 208, 495
BlsI	GCNGC	6 cut(s)	56, 75, 121, 166, 209, 496
Bme1390I	CCNGG	4 cut(s)	132, 203, 426, 470
Bme18I	GGWCC	1 cut(s)	418
BmgT120I	GGNCC	1 cut(s)	418
BmrFI	CCNGG	4 cut(s)	132, 203, 426, 470
BmsI	GCATC	2 cut(s)	431, 450
Bpu10I	CCTNAGC	1 cut(s)	144
BsaBI	GATNNNNATC	2 cut(s)	307, 333
BsaHI	GRCGYC	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	202
Bse118I	RCCGGY	1 cut(s)	167
Bse1I	ACTGG	1 cut(s)	433
Bse8I	GATNNNNATC	2 cut(s)	307, 333
BseBI	CCWGG	4 cut(s)	132, 203, 426, 470
BseDI	CCNNGG	1 cut(s)	202
BseJI	GATNNNNATC	2 cut(s)	307, 333
BseMII	CTCAG	1 cut(s)	135
BseNI	ACTGG	1 cut(s)	433
BseXI	GCAGC	2 cut(s)	66, 194
BseYI	CCCAGC	1 cut(s)	108
Bsh1236I	CGCG	1 cut(s)	76
BshFI	GGCC	2 cut(s)	424, 468
BsiSI	CCGG	2 cut(s)	168, 421
BsnI	GGCC	2 cut(s)	424, 468
Bsp143I	GATC	1 cut(s)	226
BspACI	CCGC	6 cut(s)	74, 120, 148, 165, 266, 495
BspANI	GGCC	2 cut(s)	424, 468
BspCNI	CTCAG	1 cut(s)	136
BspFNI	CGCG	1 cut(s)	76
BspMI	ACCTGC	1 cut(s)	313
BsrBI	CCGCTC	1 cut(s)	148
BsrFI	RCCGGY	1 cut(s)	167
BsrI	ACTGG	1 cut(s)	433
BssAI	RCCGGY	1 cut(s)	167
BssECI	CCNNGG	1 cut(s)	202
BssMI	GATC	1 cut(s)	226
BssNI	GRCGYC	1 cut(s)	162
Bst2UI	CCWGG	4 cut(s)	132, 203, 426, 470
Bst4CI	ACNGT	3 cut(s)	275, 410, 451
BstACI	GRCGYC	1 cut(s)	162
BstC8I	GCNNGC	3 cut(s)	169, 185, 499
BstDEI	CTNAG	1 cut(s)	144
BstFNI	CGCG	1 cut(s)	76
BstH2I	RGCGCY	1 cut(s)	190
BstHHI	GCGC	2 cut(s)	156, 189
BstKTI	GATC	1 cut(s)	229
BstMBI	GATC	1 cut(s)	226
BstMWI	GCNNNNNNNGC	4 cut(s)	60, 119, 207, 213
BstNI	CCWGG	4 cut(s)	132, 203, 426, 470
BstSCI	CCNGG	4 cut(s)	130, 201, 424, 468
BstSFI	CTRYAG	2 cut(s)	450, 527
BstUI	CGCG	1 cut(s)	76
BstV1I	GCAGC	2 cut(s)	66, 194
BsuRI	GGCC	2 cut(s)	424, 468
BtgZI	GCGATG	1 cut(s)	8
BtsI	GCAGTG	1 cut(s)	523
BtsIMutI	CAGTG	2 cut(s)	440, 523
BveI	ACCTGC	1 cut(s)	313
Cac8I	GCNNGC	3 cut(s)	169, 185, 499
CfoI	GCGC	2 cut(s)	156, 189
Cfr10I	RCCGGY	1 cut(s)	167
Cfr13I	GGNCC	1 cut(s)	418
CseI	GACGC	1 cut(s)	170
Csp6I	GTAC	1 cut(s)	223
CviAII	CATG	1 cut(s)	32
CviJI	RGCY	9 cut(s)	73, 207, 348, 382, 401, 424, 455, 468, 524
CviKI_1	RGCY	9 cut(s)	73, 207, 348, 382, 401, 424, 455, 468, 524
CviQI	GTAC	1 cut(s)	223
DdeI	CTNAG	1 cut(s)	144
DpnI	GATC	1 cut(s)	228
DpnII	GATC	1 cut(s)	226
EaeI	YGGCCR	2 cut(s)	422, 466
Eco47I	GGWCC	1 cut(s)	418
Eco47III	AGCGCT	1 cut(s)	188
EcoRII	CCWGG	4 cut(s)	130, 201, 424, 468
FaeI	CATG	1 cut(s)	35
FaiI	YATR	5 cut(s)	33, 233, 389, 513, 529
FatI	CATG	1 cut(s)	31
FblI	GTMKAC	1 cut(s)	136
Fnu4HI	GCNGC	6 cut(s)	55, 74, 120, 165, 208, 495
Fsp4HI	GCNGC	6 cut(s)	55, 74, 120, 165, 208, 495
GlaI	GCGC	2 cut(s)	155, 188
GluI	GCNGC	6 cut(s)	55, 74, 120, 165, 208, 495
GsaI	CCCAGC	1 cut(s)	112
HaeII	RGCGCY	1 cut(s)	190
HaeIII	GGCC	2 cut(s)	424, 468
HapII	CCGG	2 cut(s)	168, 421
HgaI	GACGC	1 cut(s)	170
HhaI	GCGC	2 cut(s)	156, 189
Hin1I	GRCGYC	1 cut(s)	162
Hin1II	CATG	1 cut(s)	35
Hin6I	GCGC	2 cut(s)	154, 187
HinP1I	GCGC	2 cut(s)	154, 187
HincII	GTYRAC	1 cut(s)	137
HindII	GTYRAC	1 cut(s)	137
HinfI	GANTC	6 cut(s)	4, 78, 257, 280, 303, 334
HpaII	CCGG	2 cut(s)	168, 421
HphI	GGTGA	3 cut(s)	9, 266, 422
Hpy166II	GTNNAC	4 cut(s)	137, 298, 369, 406
Hpy188I	TCNGA	1 cut(s)	279
Hpy8I	GTNNAC	4 cut(s)	137, 298, 369, 406
HpyCH4III	ACNGT	3 cut(s)	275, 410, 451
HpyCH4V	TGCA	4 cut(s)	183, 195, 444, 501
HpyF10VI	GCNNNNNNNGC	4 cut(s)	60, 119, 207, 213
HpyF3I	CTNAG	1 cut(s)	144
Hsp92I	GRCGYC	1 cut(s)	162
Hsp92II	CATG	1 cut(s)	35
HspAI	GCGC	2 cut(s)	154, 187
KroI	GCCGGC	1 cut(s)	167
KroNI	GCCGGC	1 cut(s)	169
Kzo9I	GATC	1 cut(s)	226
LmnI	GCTCC	1 cut(s)	379
Lsp1109I	GCAGC	2 cut(s)	66, 194
LweI	GCATC	2 cut(s)	431, 450
MaeIII	GTNAC	1 cut(s)	41
MalI	GATC	1 cut(s)	228
MbiI	CCGCTC	1 cut(s)	148
MboI	GATC	1 cut(s)	226
MboII	GAAGA	2 cut(s)	73, 77
MfeI	CAATTG	2 cut(s)	196, 338
MlsI	TGGCCA	1 cut(s)	468
MluCI	AATT	3 cut(s)	196, 338, 390
MluNI	TGGCCA	1 cut(s)	468
MlyI	GAGTC	1 cut(s)	13
MnlI	CCTC	4 cut(s)	22, 30, 221, 514
Mox20I	TGGCCA	1 cut(s)	468
MroNI	GCCGGC	1 cut(s)	167
MroXI	GAANNNNTTC	1 cut(s)	302
MscI	TGGCCA	1 cut(s)	468
MslI	CAYNNNNRTG	1 cut(s)	516
Msp20I	TGGCCA	1 cut(s)	468
MspI	CCGG	2 cut(s)	168, 421
MspR9I	CCNGG	4 cut(s)	132, 203, 426, 470
MunI	CAATTG	2 cut(s)	196, 338
MvaI	CCWGG	4 cut(s)	132, 203, 426, 470
MvnI	CGCG	1 cut(s)	76
MwoI	GCNNNNNNNGC	4 cut(s)	60, 119, 207, 213
NaeI	GCCGGC	1 cut(s)	169
NdeII	GATC	1 cut(s)	226
NgoMIV	GCCGGC	1 cut(s)	167
NlaIII	CATG	1 cut(s)	35
NmeAIII	GCCGAG	1 cut(s)	481
PdiI	GCCGGC	1 cut(s)	169
PdmI	GAANNNNTTC	1 cut(s)	302
PfeI	GAWTC	5 cut(s)	78, 257, 280, 303, 334
PkrI	GCNGC	6 cut(s)	56, 75, 121, 166, 209, 496
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
Psp6I	CCWGG	4 cut(s)	130, 201, 424, 468
PspFI	CCCAGC	1 cut(s)	108
PspGI	CCWGG	4 cut(s)	130, 201, 424, 468
PspPI	GGNCC	1 cut(s)	418
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
RseI	CAYNNNNRTG	1 cut(s)	516
SalI	GTCGAC	1 cut(s)	135
SatI	GCNGC	6 cut(s)	55, 74, 120, 165, 208, 495
Sau3AI	GATC	1 cut(s)	226
Sau96I	GGNCC	1 cut(s)	418
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	4 cut(s)	132, 203, 426, 470
SetI	ASST	6 cut(s)	22, 136, 253, 327, 384, 474
SfaNI	GCATC	2 cut(s)	431, 450
SfcI	CTRYAG	2 cut(s)	450, 527
SinI	GGWCC	1 cut(s)	418
SmiMI	CAYNNNNRTG	1 cut(s)	516
Sse9I	AATT	3 cut(s)	196, 338, 390
SsiI	CCGC	6 cut(s)	74, 120, 148, 165, 266, 495
StyD4I	CCNGG	4 cut(s)	130, 201, 424, 468
TaaI	ACNGT	3 cut(s)	275, 410, 451
TaqI	TCGA	4 cut(s)	84, 136, 219, 327
TasI	AATT	3 cut(s)	196, 338, 390
TauI	GCSGC	4 cut(s)	76, 122, 167, 497
TfiI	GAWTC	5 cut(s)	78, 257, 280, 303, 334
TscAI	CASTG	2 cut(s)	440, 523
TseI	GCWGC	2 cut(s)	54, 207
TspGWI	ACGGA	1 cut(s)	250
TspRI	CASTG	2 cut(s)	440, 523
VpaK11BI	GGWCC	1 cut(s)	418
XmiI	GTMKAC	1 cut(s)	136
XmnI	GAANNNNTTC	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.