Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000221.1

Orthogroup ID

OG0002025

Physical Location & Seq

Genomic Coordinates Forward (+)

146197 .. 152640

Gene Structure 6444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000221.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2910 bp

atgtcacccgggccacggccacactacccctcgctgccccgatacccgaaaggcacgtctccagaagcaacgaggaaggccaggggttctgaggtgaaggccttgttctctgtggttggaatgacacgtgctgcctgtgtcgggtctgtggagaaggcggtgaagcggctcccggggatacaggaggccgccgtggacgtgttgaataacacagcccttgttctctactatcccagcttcgtcaatgaggacaaaatatgtgaggctattgaagatgctggatttgaagctaaactgattaagttggagatgaatgacaaaaccagacaagtatgcagaataagcataagtggaatgacttgcacgtcttgctcctccactgttgaatcagccctgcaagcaattcatggagtgcaaggagctcaggtggccttagcaactgaagaagcagagattcattatgacccaagcattgttacctcccatcagctattggaaaccatagaaatcaccggatttgaagccaaacttattagtttaggggaaggcattagcaagatagagcttcaagttgatggcataaaggttggacagtcgattagagcaatagcaaaaactcttgaagcacttcctggggttcaagacatagagacatttcctgaactcaacaagatttctatttcttataaaccagagatgataggaccaagaaccctcatcgaagccatcgaatcatcagggtccgcgcatttcaaagcaatgatatacccggaaggagaagaagacactcatagacagaaggaaattaagcaatactataaattcttcttatggagtttgttttgtacagttcctgtgtttttaacctccatggtcttgatgtatattcctggaattaagaaggtgttggatgtcaaaattgtgaataagttgagtgttggtcagattctgaggtgggagttgtccactccagtgcagttcatcataggcaagaggttctacattggagcatacaaagcattgcgccatggttcagctaacatggatgttttgattgccttgggaacaaatgcagcctacttctactcggtctacatagttttaagatctgcaacccataaggatttcaagggtacagatttttttgagactagttcaatgcttattacattcatcctgttaggaaagtatctagaggtcttggcaaaaggcaagacatctgaggctattgccaagctaatggacttggcaccagaaaaggcaacactgctaactttgggtgaggaaggaaatgtgataaatgaacaagaaatggatagccggttgatacaaaagaacgatctgattaaagttatgcctggtgccaaagtagcttgtgatggtgttgttatgtggggacaaagtcatgtgaatgaaagcatgataactggagaagcacggccagtgacaaaaaagaaggatgatgcagttattggaggcaccgtgaatgagaatggagtgttgcatattaaggcaacaagagttgggtcagagagtgctctttcacagattgtaaggcttgtcgagtctgcccagatggctaaagctcctgtacaaaagtttgctgatcgcatttccaaatactttgtgccagtggtcatcacactttcattttcgacttggcttgcctggttcttaggagggaagttccacaggtacccacgttcttggataccatcttcaatcgatagttttgagcttgctcttcagtttgggatctcggtcatggtcattgcctgcccttgtgctttaggcctagcaactcctacagctgttatggttggtacaggagttggtgcatctcaaggtatactgatcaaaggcggacatgcattagagagtgcgcaaaaggtgaactgcattgtgtttgacaagacagggactctcacagtagggaagccagtggttgttagcaccaaaatctttaacaaaatgctacctcaagaattctatgaactagttgctgcaactgaggtcaacagtgagcacccactagccaaagctattgtggaatatgccaagaaaatcagagaagatgaagagaattctacctggccagaagcacaaaacttcgcatcccttaccggccaaggagtgaaggcagttgttcgaaataaggaaataactgtaggcaacaagagtttaatgttggacattaacattgcgattccagaggaggctgaagttgcacttgcacaaactgaagcattggctcaaactgggattttaatagctgtagataacgaaatagcaggacttatagccatatctgatccactgaaacctggtgctcgagaagtcatttccatacttaaatctatgagagttagaagcatcatggttacaggtgacaattggggtacagccaattctattgccaaggaaactgaaattgagacggtgattgcagaagccaaaccccagcacaaagctgagaaaataaaagatttgcaggctgaaggctacactgtggcaatggtgggagatgggatcaatgactcaccggcacttgtggcagcagatgttggaatggcaattggtgctggcacagacattgcgatcgaggcagctgacattgttcttatgaagagcaacttggaagaggttataacagccattgacctttcccggaaaaccttttcccgtattcgtctgaactacatttgggcattgggttacaatgtgcttggaatcccgatagctgcaggggtcctttttccttccactaggttcagattaccaccatggattgcaggagctgcaatggcagcatcctccgttagtgttgtatgctgttctctgttgttgaagaactacaagagacccaagaagttggatatccttgagatacatgaagtaagggttgagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0008150 GO:0008324 GO:0009636 GO:0010035 GO:0010038 GO:0010273 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046688 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061687 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0097501 GO:0098655 GO:0098660 GO:0098662 GO:0098754 GO:0099131 GO:0099132 GO:1990169

KEGG Pathways

Metabolic & Signaling

ko01524 ko04016 map01524 map04016

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

969

Amino Acids

105.29

Weight (kDa)

6.49

Isoelectric Point (pI)

38.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63440
fragaria_vesca	FvH4_5g02090 FvH4_5g02090 FvH4_5g02091 FvH4_5g02091 FvH4_5g02091 FvH4_5g02091
malus_domestica	MD06G1080800.v1.1 MD06G1080900.v1.1 MD14G1102600.v1.1
prunus_persica	Prupe.5G097900_v2.0.a1 Prupe.5G097900_v2.0.a1 Prupe.5G098000_v2.0.a1
pyrus_communis	pycom06g07780 pycom06g07790 pycom14g09890
rosa_chinensis	RchiOBHm_Chr7g0197781 RchiOBHm_Chr7g0198111 RchiOBHm_Chr7g0198141
rosa_laevigata	RLG00000003885 RLG00000003888 RLG00000019170
rosa_multiflora	Rmu_sc0000221.1_g000018 Rmu_sc0000221.1_g000030 Rmu_sc0006732.1_g000016
rosa_roxburghii	Rroxscaffold_3G00257940 Rroxscaffold_3G00257970 Rroxscaffold_3G00257990
rosa_rugosa	Rorug07G0045700 Rorug07G0045700 Rorug07G0045800 Rorug07G0045800 Rorug07G0045900
rosa_samantha	Rh7AG169100 Rh7AG169200 Rh7BG169900 Rh7BG172300 Rh7CG178600 Rh7CG178700 Rh7DG169200 Rh7DG171400 Rh7DG171800
rosa_wichuraiana	Rw7G014570 Rw7G014780 Rw7G014790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	687, 2648
AasI	GACNNNNNNGTC	1 cut(s)	364
Acc16I	TGCGCA	1 cut(s)	1884
Acc65I	GGTACC	1 cut(s)	1695
AccB1I	GGYRCC	4 cut(s)	1249, 1361, 1478, 1695
AccI	GTMKAC	2 cut(s)	1092, 1849
AccII	CGCG	1 cut(s)	746
AciI	CCGC	5 cut(s)	158, 166, 189, 744, 1863
AclWI	GGATC	3 cut(s)	1763, 2306, 2537
AcoI	YGGCCR	4 cut(s)	17, 1439, 2093, 2125
AcsI	RAATTY	3 cut(s)	821, 1985, 2083
AcuI	CTGAAG	5 cut(s)	462, 1730, 2241, 2262, 2517
AcvI	CACGTG	1 cut(s)	128
AfaI	GTAC	6 cut(s)	847, 1135, 1593, 1697, 1825, 2401
AfiI	CCNNNNNNNGG	2 cut(s)	15, 141
AflIII	ACRYGT	2 cut(s)	125, 198
AhlI	ACTAGT	2 cut(s)	1151, 1996
AjiI	CACGTC	3 cut(s)	57, 199, 366
AjnI	CCWGG	7 cut(s)	80, 631, 889, 1357, 1667, 2090, 2323
AjuI	GAANNNNNNNTTGG	2 cut(s)	2618, 2650
AleI	CACNNNNGTG	1 cut(s)	971
Alw21I	GWGCWC	4 cut(s)	424, 1540, 2028, 2332
Alw26I	GTCTC	5 cut(s)	63, 644, 1142, 2429, 2854
AlwI	GGATC	3 cut(s)	1763, 2306, 2537
AlwNI	CAGNNNCTG	3 cut(s)	854, 949, 2798
Ama87I	CYCGRG	3 cut(s)	8, 172, 2331
ApeKI	GCWGC	9 cut(s)	34, 131, 1073, 2003, 2555, 2606, 2741, 2798, 2807
ApoI	RAATTY	3 cut(s)	821, 1985, 2083
ArsI	GACNNNNNNTTYG	2 cut(s)	41, 73
Asp700I	GAANNNNTTC	1 cut(s)	627
Asp718I	GGTACC	1 cut(s)	1695
AspLEI	GCGC	3 cut(s)	748, 1026, 1885
AspS9I	GGNCC	4 cut(s)	11, 704, 741, 2749
AsuC2I	CCSGG	6 cut(s)	9, 10, 173, 174, 770, 2668
AsuHPI	GGTGA	8 cut(s)	106, 172, 502, 1292, 1903, 2399, 2452, 2532
AsuII	TTCGAA	1 cut(s)	2149
AvaI	CYCGRG	3 cut(s)	8, 172, 2331
AvaII	GGWCC	3 cut(s)	704, 741, 2749
BaeI	ACNNNNGTAYC	4 cut(s)	1687, 1720, 1815, 1848
BalI	TGGCCA	1 cut(s)	2095
BanI	GGYRCC	4 cut(s)	1249, 1361, 1478, 1695
BanII	GRGCYC	1 cut(s)	424
BbrPI	CACGTG	1 cut(s)	128
BbsI	GAAGAC	1 cut(s)	789
Bbv12I	GWGCWC	4 cut(s)	424, 1540, 2028, 2332
BbvI	GCAGC	9 cut(s)	21, 118, 1085, 1990, 2567, 2618, 2728, 2785, 2819
BccI	CCATC	7 cut(s)	492, 569, 734, 1373, 1570, 1723, 2519
BceAI	ACGGC	3 cut(s)	32, 176, 1454
BciT130I	CCWGG	7 cut(s)	82, 633, 891, 1359, 1669, 2092, 2325
BciVI	GTATCC	2 cut(s)	171, 1704
BclI	TGATCA	1 cut(s)	1854
BcnI	CCSGG	6 cut(s)	9, 10, 173, 174, 770, 2668
BcoDI	GTCTC	5 cut(s)	63, 644, 1142, 2429, 2854
BcuI	ACTAGT	2 cut(s)	1151, 1996
BfaI	CTAG	6 cut(s)	1152, 1193, 1796, 1997, 2033, 2766
BfmI	CTRYAG	4 cut(s)	1806, 2166, 2274, 2742
BfuI	GTATCC	2 cut(s)	171, 1704
BglI	GCCNNNNNGGC	1 cut(s)	1577
BglII	AGATCT	1 cut(s)	1106
Bme18I	GGWCC	3 cut(s)	704, 741, 2749
BmeT110I	CYCGRG	3 cut(s)	8, 172, 2331
BmgBI	CACGTC	3 cut(s)	57, 199, 366
BmgT120I	GGNCC	4 cut(s)	11, 704, 741, 2749
BmiI	GGNNCC	7 cut(s)	170, 742, 1251, 1363, 1480, 1697, 2750
BmrI	ACTGGG	1 cut(s)	2268
BmsI	GCATC	6 cut(s)	265, 1453, 1847, 2123, 2382, 2819
BmuI	ACTGGG	1 cut(s)	2268
BpiI	GAAGAC	1 cut(s)	789
BpmI	CTGGAG	3 cut(s)	45, 954, 1449
Bpu10I	CCTNAGC	2 cut(s)	423, 433
Bpu14I	TTCGAA	1 cut(s)	2149
BpuEI	CTTGAG	3 cut(s)	1827, 1965, 2903
BpuMI	CCSGG	6 cut(s)	9, 10, 173, 174, 770, 2668
Bsa29I	ATCGAT	1 cut(s)	1725
BsaAI	YACGTR	1 cut(s)	128
BsaI	GGTCTC	1 cut(s)	2854
BsaWI	WCCGGW	1 cut(s)	512
BsaXI	ACNNNNNCTCC	4 cut(s)	411, 441, 1467, 1497
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 141
Bse118I	RCCGGY	3 cut(s)	1320, 2123, 2542
Bse1I	ACTGG	6 cut(s)	971, 1432, 1442, 1631, 1940, 2263
Bse3DI	GCAATG	7 cut(s)	765, 1019, 1770, 2199, 2520, 2592, 2808
BseBI	CCWGG	7 cut(s)	82, 633, 891, 1359, 1669, 2092, 2325
BseCI	ATCGAT	1 cut(s)	1725
BseGI	GGATG	6 cut(s)	916, 1051, 1173, 1465, 2114, 2810
BseLI	CCNNNNNNNGG	2 cut(s)	15, 141
BseMI	GCAATG	7 cut(s)	765, 1019, 1770, 2199, 2520, 2592, 2808
BseMII	CTCAG	6 cut(s)	81, 437, 941, 1212, 2001, 2463
BseNI	ACTGG	6 cut(s)	971, 1432, 1442, 1631, 1940, 2263
BseRI	GAGGAG	2 cut(s)	364, 2228
BseXI	GCAGC	9 cut(s)	21, 118, 1085, 1990, 2567, 2618, 2728, 2785, 2819
BseYI	CCCAGC	2 cut(s)	233, 2460
BsgI	GTGCAG	1 cut(s)	995
Bsh1236I	CGCG	1 cut(s)	746
Bsh1285I	CGRYCG	1 cut(s)	2601
BshNI	GGYRCC	4 cut(s)	1249, 1361, 1478, 1695
BshVI	ATCGAT	1 cut(s)	1725
BsiEI	CGRYCG	1 cut(s)	2601
BsiHKAI	GWGCWC	4 cut(s)	424, 1540, 2028, 2332
BsiHKCI	CYCGRG	3 cut(s)	8, 172, 2331
BsiSI	CCGG	8 cut(s)	9, 173, 513, 770, 1321, 2124, 2543, 2668
BslFI	GGGAC	2 cut(s)	1410, 1933
BslI	CCNNNNNNNGG	2 cut(s)	15, 141
BsmAI	GTCTC	5 cut(s)	63, 644, 1142, 2429, 2854
BsmBI	CGTCTC	2 cut(s)	63, 2429
BsmFI	GGGAC	2 cut(s)	1410, 1933
Bso31I	GGTCTC	1 cut(s)	2854
BsoBI	CYCGRG	3 cut(s)	8, 172, 2331
Bsp119I	TTCGAA	1 cut(s)	2149
Bsp1286I	GDGCHC	4 cut(s)	424, 1540, 2028, 2332
Bsp1407I	TGTACA	2 cut(s)	845, 1591
Bsp143I	GATC	8 cut(s)	1106, 1339, 1606, 1755, 1854, 2311, 2529, 2598
Bsp19I	CCATGG	3 cut(s)	870, 1027, 2783
BspACI	CCGC	5 cut(s)	158, 166, 189, 744, 1863
BspCNI	CTCAG	6 cut(s)	82, 436, 942, 1213, 2002, 2464
BspDI	ATCGAT	1 cut(s)	1725
BspFNI	CGCG	1 cut(s)	746
BspLI	GGNNCC	7 cut(s)	170, 742, 1251, 1363, 1480, 1697, 2750
BspMAI	CTGCAG	1 cut(s)	2746
BspPI	GGATC	3 cut(s)	1763, 2306, 2537
BspQI	GCTCTTC	2 cut(s)	1749, 2621
BspT104I	TTCGAA	1 cut(s)	2149
BspT107I	GGYRCC	4 cut(s)	1249, 1361, 1478, 1695
BspTNI	GGTCTC	1 cut(s)	2854
BsrDI	GCAATG	7 cut(s)	765, 1019, 1770, 2199, 2520, 2592, 2808
BsrFI	RCCGGY	3 cut(s)	1320, 2123, 2542
BsrGI	TGTACA	2 cut(s)	845, 1591
BsrI	ACTGG	6 cut(s)	971, 1432, 1442, 1631, 1940, 2263
BssAI	RCCGGY	3 cut(s)	1320, 2123, 2542
BssMI	GATC	8 cut(s)	1106, 1339, 1606, 1755, 1854, 2311, 2529, 2598
BssNAI	GTATAC	1 cut(s)	1850
BssT1I	CCWWGG	6 cut(s)	870, 1027, 1059, 2128, 2418, 2783
Bst1107I	GTATAC	1 cut(s)	1850
Bst2UI	CCWGG	7 cut(s)	82, 633, 891, 1359, 1669, 2092, 2325
Bst4CI	ACNGT	9 cut(s)	382, 594, 850, 1483, 1930, 2021, 2167, 2440, 2509
Bst6I	CTCTTC	4 cut(s)	1749, 2073, 2621, 2634
BstAPI	GCANNNNNTGC	3 cut(s)	369, 2579, 2798
BstAUI	TGTACA	2 cut(s)	845, 1591
BstBAI	YACGTR	1 cut(s)	128
BstBI	TTCGAA	1 cut(s)	2149
BstC8I	GCNNGC	6 cut(s)	399, 1665, 1740, 1777, 2493, 2584
BstDEI	CTNAG	8 cut(s)	90, 423, 433, 950, 1221, 1675, 2010, 2472
BstDSI	CCRYGG	5 cut(s)	14, 192, 870, 1027, 2783
BstF5I	GGATG	6 cut(s)	916, 1051, 1173, 1465, 2114, 2810
BstFNI	CGCG	1 cut(s)	746
BstHHI	GCGC	3 cut(s)	748, 1026, 1885
BstKTI	GATC	8 cut(s)	1109, 1342, 1609, 1758, 1857, 2314, 2532, 2601
BstMAI	GTCTC	5 cut(s)	63, 644, 1142, 2429, 2854
BstMBI	GATC	8 cut(s)	1106, 1339, 1606, 1755, 1854, 2311, 2529, 2598
BstMCI	CGRYCG	1 cut(s)	2601
BstNI	CCWGG	7 cut(s)	82, 633, 891, 1359, 1669, 2092, 2325
BstNSI	RCATGY	1 cut(s)	1871
BstSFI	CTRYAG	4 cut(s)	1806, 2166, 2274, 2742
BstUI	CGCG	1 cut(s)	746
BstV1I	GCAGC	9 cut(s)	21, 118, 1085, 1990, 2567, 2618, 2728, 2785, 2819
BstV2I	GAAGAC	1 cut(s)	789
BstX2I	RGATCY	2 cut(s)	1106, 1755
BstXI	CCANNNNNNTGG	3 cut(s)	1240, 1707, 2872
BstYI	RGATCY	2 cut(s)	1106, 1755
BstZ17I	GTATAC	1 cut(s)	1850
Bsu15I	ATCGAT	1 cut(s)	1725
BsuI	GTATCC	2 cut(s)	171, 1704
BsuTUI	ATCGAT	1 cut(s)	1725
BtgI	CCRYGG	5 cut(s)	14, 192, 870, 1027, 2783
BtrI	CACGTC	3 cut(s)	57, 199, 366
BtsCI	GGATG	6 cut(s)	916, 1051, 1173, 1465, 2114, 2810
BtsI	GCAGTG	1 cut(s)	1265
BtsIMutI	CAGTG	9 cut(s)	378, 978, 1265, 1449, 1638, 1947, 2026, 2315, 2505
Cac8I	GCNNGC	6 cut(s)	399, 1665, 1740, 1777, 2493, 2584
CaiI	CAGNNNCTG	3 cut(s)	854, 949, 2798
CfoI	GCGC	3 cut(s)	748, 1026, 1885
Cfr10I	RCCGGY	3 cut(s)	1320, 2123, 2542
Cfr13I	GGNCC	4 cut(s)	11, 704, 741, 2749
Cfr9I	CCCGGG	2 cut(s)	8, 172
ClaI	ATCGAT	1 cut(s)	1725
CsiI	ACCWGGT	1 cut(s)	2323
Csp6I	GTAC	6 cut(s)	846, 1134, 1592, 1696, 1824, 2400
CviQI	GTAC	6 cut(s)	846, 1134, 1592, 1696, 1824, 2400
DdeI	CTNAG	8 cut(s)	90, 423, 433, 950, 1221, 1675, 2010, 2472
DpnI	GATC	8 cut(s)	1108, 1341, 1608, 1757, 1856, 2313, 2531, 2600
DpnII	GATC	8 cut(s)	1106, 1339, 1606, 1755, 1854, 2311, 2529, 2598
DrdI	GACNNNNNNGTC	1 cut(s)	364
DseDI	GACNNNNNNGTC	1 cut(s)	364
EaeI	YGGCCR	4 cut(s)	17, 1439, 2093, 2125
Eam1104I	CTCTTC	4 cut(s)	1749, 2073, 2621, 2634
EarI	CTCTTC	4 cut(s)	1749, 2073, 2621, 2634
EciI	GGCGGA	1 cut(s)	1878
Ecl136II	GAGCTC	1 cut(s)	422
Eco130I	CCWWGG	6 cut(s)	870, 1027, 1059, 2128, 2418, 2783
Eco147I	AGGCCT	2 cut(s)	101, 1794
Eco24I	GRGCYC	1 cut(s)	424
Eco31I	GGTCTC	1 cut(s)	2854
Eco32I	GATATC	1 cut(s)	2878
Eco47I	GGWCC	3 cut(s)	704, 741, 2749
Eco53kI	GAGCTC	1 cut(s)	422
Eco57I	CTGAAG	5 cut(s)	462, 1730, 2241, 2262, 2517
Eco72I	CACGTG	1 cut(s)	128
Eco88I	CYCGRG	3 cut(s)	8, 172, 2331
EcoICRI	GAGCTC	1 cut(s)	422
EcoO109I	RGGNCCY	1 cut(s)	2749
EcoRI	GAATTC	2 cut(s)	1985, 2083
EcoRII	CCWGG	7 cut(s)	80, 631, 889, 1357, 1667, 2090, 2323
EcoRV	GATATC	1 cut(s)	2878
EcoT14I	CCWWGG	6 cut(s)	870, 1027, 1059, 2128, 2418, 2783
EcoT22I	ATGCAT	1 cut(s)	1873
EcoT38I	GRGCYC	1 cut(s)	424
ErhI	CCWWGG	6 cut(s)	870, 1027, 1059, 2128, 2418, 2783
Esp3I	CGTCTC	2 cut(s)	63, 2429
FalI	AAGNNNNNCTT	6 cut(s)	513, 545, 2214, 2246, 2618, 2650
FaqI	GGGAC	2 cut(s)	1410, 1933
FbaI	TGATCA	1 cut(s)	1854
FblI	GTMKAC	2 cut(s)	1092, 1849
FokI	GGATG	6 cut(s)	923, 1058, 1160, 1472, 2101, 2797
FriOI	GRGCYC	1 cut(s)	424
FspBI	CTAG	6 cut(s)	1152, 1193, 1796, 1997, 2033, 2766
FspI	TGCGCA	1 cut(s)	1884
GlaI	GCGC	3 cut(s)	747, 1025, 1884
GsaI	CCCAGC	2 cut(s)	237, 2464
GsuI	CTGGAG	3 cut(s)	45, 954, 1449
HapII	CCGG	8 cut(s)	9, 173, 513, 770, 1321, 2124, 2543, 2668
HhaI	GCGC	3 cut(s)	748, 1026, 1885
Hin6I	GCGC	3 cut(s)	746, 1024, 1883
HinP1I	GCGC	3 cut(s)	746, 1024, 1883
HincII	GTYRAC	1 cut(s)	2017
HindII	GTYRAC	1 cut(s)	2017
HinfI	GANTC	9 cut(s)	386, 454, 731, 946, 1565, 1921, 2206, 2537, 2730
HpaII	CCGG	8 cut(s)	9, 173, 513, 770, 1321, 2124, 2543, 2668
HphI	GGTGA	8 cut(s)	106, 172, 502, 1292, 1903, 2399, 2452, 2532
Hpy166II	GTNNAC	6 cut(s)	196, 966, 1093, 1850, 1894, 2017
Hpy8I	GTNNAC	6 cut(s)	196, 966, 1093, 1850, 1894, 2017
HpyCH4III	ACNGT	9 cut(s)	382, 594, 850, 1483, 1930, 2021, 2167, 2440, 2509
HpyCH4IV	ACGT	5 cut(s)	56, 127, 198, 365, 1702
HpyF3I	CTNAG	8 cut(s)	90, 423, 433, 950, 1221, 1675, 2010, 2472
HpySE526I	ACGT	5 cut(s)	56, 127, 198, 365, 1702
HspAI	GCGC	3 cut(s)	746, 1024, 1883
KpnI	GGTACC	1 cut(s)	1699
Ksp22I	TGATCA	1 cut(s)	1854
Kzo9I	GATC	8 cut(s)	1106, 1339, 1606, 1755, 1854, 2311, 2529, 2598
LguI	GCTCTTC	2 cut(s)	1749, 2621
LmnI	GCTCC	6 cut(s)	174, 377, 419, 1007, 1591, 2795
Lsp1109I	GCAGC	9 cut(s)	21, 118, 1085, 1990, 2567, 2618, 2728, 2785, 2819
LweI	GCATC	6 cut(s)	265, 1453, 1847, 2123, 2382, 2819
MabI	ACCWGGT	1 cut(s)	2323
MaeI	CTAG	6 cut(s)	1152, 1193, 1796, 1997, 2033, 2766
MaeII	ACGT	5 cut(s)	56, 127, 198, 365, 1702
MaeIII	GTNAC	6 cut(s)	3, 475, 1444, 2380, 2387, 2714
MalI	GATC	8 cut(s)	1108, 1341, 1608, 1757, 1856, 2313, 2531, 2600
MboI	GATC	8 cut(s)	1106, 1339, 1606, 1755, 1854, 2311, 2529, 2598
MfeI	CAATTG	2 cut(s)	2392, 2574
MflI	RGATCY	2 cut(s)	1106, 1755
MhlI	GDGCHC	4 cut(s)	424, 1540, 2028, 2332
MlsI	TGGCCA	1 cut(s)	2095
MluNI	TGGCCA	1 cut(s)	2095
MlyI	GAGTC	3 cut(s)	1574, 1915, 2531
MmeI	TCCRAC	7 cut(s)	97, 285, 568, 888, 2169, 2545, 2853
Mox20I	TGGCCA	1 cut(s)	2095
Mph1103I	ATGCAT	1 cut(s)	1873
MroXI	GAANNNNTTC	1 cut(s)	627
MscI	TGGCCA	1 cut(s)	2095
MslI	CAYNNNNRTG	2 cut(s)	971, 1410
Msp20I	TGGCCA	1 cut(s)	2095
MspA1I	CMGCKG	2 cut(s)	1811, 2609
MspI	CCGG	8 cut(s)	9, 173, 513, 770, 1321, 2124, 2543, 2668
MunI	CAATTG	2 cut(s)	2392, 2574
MvaI	CCWGG	7 cut(s)	82, 633, 891, 1359, 1669, 2092, 2325
MvnI	CGCG	1 cut(s)	746
NciI	CCSGG	6 cut(s)	9, 10, 173, 174, 770, 2668
NcoI	CCATGG	3 cut(s)	870, 1027, 2783
NdeII	GATC	8 cut(s)	1106, 1339, 1606, 1755, 1854, 2311, 2529, 2598
NlaIV	GGNNCC	7 cut(s)	170, 742, 1251, 1363, 1480, 1697, 2750
NmuCI	GTSAC	3 cut(s)	3, 1444, 2387
NsbI	TGCGCA	1 cut(s)	1884
NsiI	ATGCAT	1 cut(s)	1873
NspI	RCATGY	1 cut(s)	1871
NspV	TTCGAA	1 cut(s)	2149
OliI	CACNNNNGTG	1 cut(s)	971
PaeR7I	CTCGAG	1 cut(s)	2331
PceI	AGGCCT	2 cut(s)	101, 1794
PciSI	GCTCTTC	2 cut(s)	1749, 2621
PcsI	WCGNNNNNNNCGW	1 cut(s)	726
PdmI	GAANNNNTTC	1 cut(s)	627
PfeI	GAWTC	6 cut(s)	386, 454, 731, 946, 2206, 2730
PflFI	GACNNNGTC	1 cut(s)	1401
PfoI	TCCNGGA	2 cut(s)	889, 2666
Ple19I	CGATCG	1 cut(s)	2601
PleI	GAGTC	3 cut(s)	1573, 1915, 2531
PmaCI	CACGTG	1 cut(s)	128
PmlI	CACGTG	1 cut(s)	128
PpsI	GAGTC	3 cut(s)	1573, 1915, 2531
Ppu21I	YACGTR	1 cut(s)	128
PpuMI	RGGWCCY	1 cut(s)	2749
PsiI	TTATAA	2 cut(s)	687, 2648
Psp124BI	GAGCTC	1 cut(s)	424
Psp5II	RGGWCCY	1 cut(s)	2749
Psp6I	CCWGG	7 cut(s)	80, 631, 889, 1357, 1667, 2090, 2323
PspCI	CACGTG	1 cut(s)	128
PspFI	CCCAGC	2 cut(s)	233, 2460
PspGI	CCWGG	7 cut(s)	80, 631, 889, 1357, 1667, 2090, 2323
PspN4I	GGNNCC	7 cut(s)	170, 742, 1251, 1363, 1480, 1697, 2750
PspPI	GGNCC	4 cut(s)	11, 704, 741, 2749
PspPPI	RGGWCCY	1 cut(s)	2749
PstI	CTGCAG	1 cut(s)	2746
PstNI	CAGNNNCTG	3 cut(s)	854, 949, 2798
PsuI	RGATCY	2 cut(s)	1106, 1755
PsyI	GACNNNGTC	1 cut(s)	1401
PvuI	CGATCG	1 cut(s)	2601
PvuII	CAGCTG	2 cut(s)	1811, 2609
RsaI	GTAC	6 cut(s)	847, 1135, 1593, 1697, 1825, 2401
RsaNI	GTAC	6 cut(s)	846, 1134, 1592, 1696, 1824, 2400
RseI	CAYNNNNRTG	2 cut(s)	971, 1410
SacI	GAGCTC	1 cut(s)	424
SapI	GCTCTTC	2 cut(s)	1749, 2621
Sau3AI	GATC	8 cut(s)	1106, 1339, 1606, 1755, 1854, 2311, 2529, 2598
Sau96I	GGNCC	4 cut(s)	11, 704, 741, 2749
SchI	GAGTC	3 cut(s)	1574, 1915, 2531
SduI	GDGCHC	4 cut(s)	424, 1540, 2028, 2332
SexAI	ACCWGGT	1 cut(s)	2323
SfaNI	GCATC	6 cut(s)	265, 1453, 1847, 2123, 2382, 2819
SfcI	CTRYAG	4 cut(s)	1806, 2166, 2274, 2742
Sfr274I	CTCGAG	1 cut(s)	2331
SfuI	TTCGAA	1 cut(s)	2149
SinI	GGWCC	3 cut(s)	704, 741, 2749
SlaI	CTCGAG	1 cut(s)	2331
SmaI	CCCGGG	2 cut(s)	10, 174
SmiMI	CAYNNNNRTG	2 cut(s)	971, 1410
SmlI	CTYRAG	4 cut(s)	1842, 1980, 2331, 2882
SmoI	CTYRAG	4 cut(s)	1842, 1980, 2331, 2882
SpeI	ACTAGT	2 cut(s)	1151, 1996
SseBI	AGGCCT	2 cut(s)	101, 1794
SsiI	CCGC	5 cut(s)	158, 166, 189, 744, 1863
SspMI	CTAG	6 cut(s)	1152, 1193, 1796, 1997, 2033, 2766
SstI	GAGCTC	1 cut(s)	424
StuI	AGGCCT	2 cut(s)	101, 1794
StyI	CCWWGG	6 cut(s)	870, 1027, 1059, 2128, 2418, 2783
TaaI	ACNGT	9 cut(s)	382, 594, 850, 1483, 1930, 2021, 2167, 2440, 2509
TaiI	ACGT	5 cut(s)	59, 130, 201, 368, 1705
TaqI	TCGA	9 cut(s)	596, 720, 729, 1563, 1655, 1725, 2149, 2332, 2601
TaqII	GACCGA	2 cut(s)	1078, 1750
TatI	WGTACW	2 cut(s)	845, 1591
TauI	GCSGC	2 cut(s)	169, 191
TfiI	GAWTC	6 cut(s)	386, 454, 731, 946, 2206, 2730
TscAI	CASTG	9 cut(s)	385, 978, 1272, 1449, 1638, 1947, 2026, 2322, 2512
TseFI	GTSAC	3 cut(s)	3, 1444, 2387
TseI	GCWGC	9 cut(s)	34, 131, 1073, 2003, 2555, 2606, 2741, 2798, 2807
Tsp45I	GTSAC	3 cut(s)	3, 1444, 2387
TspGWI	ACGGA	1 cut(s)	2806
TspMI	CCCGGG	2 cut(s)	8, 172
TspRI	CASTG	9 cut(s)	385, 978, 1272, 1449, 1638, 1947, 2026, 2322, 2512
Tth111I	GACNNNGTC	1 cut(s)	1401
VpaK11BI	GGWCC	3 cut(s)	704, 741, 2749
XapI	RAATTY	3 cut(s)	821, 1985, 2083
XbaI	TCTAGA	1 cut(s)	1192
XceI	RCATGY	1 cut(s)	1871
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2044
XhoI	CTCGAG	1 cut(s)	2331
XmaI	CCCGGG	2 cut(s)	8, 172
XmiI	GTMKAC	2 cut(s)	1092, 1849
XmnI	GAANNNNTTC	1 cut(s)	627
XspI	CTAG	6 cut(s)	1152, 1193, 1796, 1997, 2033, 2766
Zsp2I	ATGCAT	1 cut(s)	1873

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.