Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002025

Physical Location & Seq

Genomic Coordinates Reverse (-)

13228413 .. 13234107

Gene Structure 5695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG169900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2949 bp

ATGAGATCGTTAAAGATCGCGGGCCACAGCGGCAGCGATTTGTCGCCGCGGCCTCACTACCCCTCCATGCCAAAGTATCCGAAGGGTGTGGTGACTGAGGAGACCACTATGGTGGTGGGCACCGAGTCCAAGGCCGTGTTCTCCGTCATCGGCATGACCTGCTCAGCCTGCGCGGGATCGGTAGAGAAGGCTGTGAAGAGGCTACCGGGGATTCGCGAGGCGGTGGTCGACGTGCTCAACAACCGTGCCCAAGTCATGTTCTTCCCCAATTTCGTTAACGCAGAGACTATCCGTGAGACTATTGAAGATGTTGGATTTCAAGCAACATTGATTGATGATGAGGGAAACGAGAAGTCCACGTTGGTGTGCAGAATAAGGATCAAAGGAATGACTTGCACTTCTTGCTCTTCCACTGTTGAATCAGCTTTGCAGGCAGTTCATGGTGTACAGAAAGCCCAAGTTGCCTTAGCAACTGAAGAAGCAGATGTCCACTATGATCCAAAGATAGTGAGCTGCAATCAGCTGATGGTAGCCATTGAAGACACTGGATTCGAAGCCATACTTATTAATTCAGGTGAAGACATGAGCAAGATAGATCTTAAAGTTGACGGTGTAAGGACCGATCATTCAATGAGAATACTTGAACAGTCTCTTCAAGCACTCCCTGGGGTGCAAGGTGTAGACATACATCATGATGACAGAAAAATTTCCCTGTCTTACAAGCCAGATATGACAGGGCCCCGAAATTTCATCAATGTGATTGAAACAACTGGATCCGGGCGTTTCAGGGCAAAAATTTATCCAGGCGGTGGAGCAGGAAGAGAAAATCATAGGAAGGAGGAAATTCAGCAGTACTACAGAGTCTTTCTCTGGAGTTTGATTTTCACCATTCCAGTATTTTTAACCTCCATGGTCTTCATGTACATCCCTGGACTTAAGCATGGCTTAGACAAGAAAGTAGTAAATATGCTCAGCATTGGGGAGCTTATAAGGTGGATTCTGTCTACTCCGGTGCAGTTCATCATAGGCCGGAGGTTCTATACTGGGGCATACAAGTCATTGCGCCATTGTTCTGCTAATATGGATGTGTTAATTGCCTTGGGAACAAATGCAGCATATTTCTATTCAGTCTACTCCGTACTGAGAGCTGCCACCTCCCCACATTTTAAGGGTACAGATTTCTTTGAGACTAGTGCAATGCTAATCTCATTCATTCTCTTAGGGAAGTACCTAGAGGTGTTAGCTAAGGGGAAGACATCTGATGCTATTGCCAAACTGATGGATTTGGCACCTGAAACAGCCACTTTGTTGACTCTAAACGAAGAAGGAAACATTTTAGGTGAAGAAGAAATTGATGGTCGGTTGATACAAAAGAACGATGTCATCAAAATTATTCCAGGGGCGAAGGTAGCTTCGGATGGTTATGTGATATGGGGACAAAGCCATGTAAATGAGAGTATGATAACAGGAGAAGCGCGTCCAGTGGCAAAAAGGAAGGGTGATACAGTCATTGGAGGTACTGTAAATGAAAATGGTGTGTTGCATATCAAGGCAACACGGGTTGGATCAGAAAGTTCCCTCTCGCAGATTGTACGGCTTGTTGAGTCAGCTCAGATGGCAAAAGCTCCTGTTCAGAAGTTTGCTGACCGCATTTCTAAATTCTTTGTGCCACTGGTGATCATGCTTTCATTCTTTACCTGGCTTTCATGGTTTTTGGCTGGAAAATTCCATGGCTACCCGAAATCTTGGATACCGAAGTCCATGGATAGCTTTCAGCTTGCTCTCCAGTTTGGGATCTCTGTCATGGTTATTGCGTGCCCTTGTGCTCTAGGCCTAGCAACTCCTACTGCTGTCATGGTTGGTACTGGAGTCGGTGCATCCCAAGGTGTACTGATCAAAGGAGGTCAAGCATTAGAAAGTGCACATAAGGTGGACTGCATTGTGTTCGACAAGACAGGGACTCTTACAATTGGGAAGCCACTGGTTGTTAACACACGACTCCTGAAAAATATGGTGCTTCGAGAATTCTATGAACTTGTTGCTGCAGCTGAGGTTAACAGTGAACACCCCTTGGCCAAGGCCATTGTTGAGAATGCCAAAAAATTCAGAGAAGATGAAGAGAATCCAGCCGGGCCAGAAGCGCATGACTTTGCCTCCATTACTGGTCACGGGGTGAAGGCTATTGTTCGGGGCAGGGAAATAATTGTGGGGAACAAGAGCTTGATGGTGGACCAGAACATTGCAGTTCCACTCGATGCAGAAGACTACCTAGCAGAAGCTGAAGGGCTGGCTCAAACTGGGATTCTAGTAGCCATAGATGGAGAAGTGACCGGAGTTCTAGCAATATCTGATCCACTGAAACCAGGTGCTGAAGAAGTAATTACCATACTCAAGTCAATGAATGTTAGAAGCATAATGGTGACAGGTGACAATTGGGGAACTGCAAATTCTATTGCCAATGAAGTTGGTATTGATACTGTTATAGCCGAAGCGAAACCTGACCAGAAAGCAGATAAAGTGAAGGAATTGCAGGCTTCAGGCTACACTGTGGCGATGGTGGGAGATGGCATCAATGACTCACCAGCACTTGTGGCGGCAGATGTAGGAATGGCAATTGGTGCTGGCACTGACATTGCAATTGAGGCAGCAGACATTCTGCTAATGAAGAGCAACTTGGAGGATGTGATAACTGCAATTGATCTTTCAAGGAAAACCTTCACCCGTATTCGTTTGAACTACATTTGGGCTTTGGGATATAATGTGCTCGGGATCCCAATAGCTGCAGGAGTTCTCTTCCCATCCACTGGATTTCGCTTACCCCCTTGGATTGCTGGAGCTGCAATGGCTGCTTCTTCTGTCAGTGTTGTTTGCTGTTCATTGTTGTTGAAGAACTATAAGAGACCCAAGGAGCTGAATAACCTTGAGGTGCGTGGAATAGTGATCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0008150 GO:0008324 GO:0009636 GO:0010035 GO:0010038 GO:0010273 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046688 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061687 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0097501 GO:0098655 GO:0098660 GO:0098662 GO:0098754 GO:0099131 GO:0099132 GO:1990169

KEGG Pathways

Metabolic & Signaling

ko01524 ko04016 map01524 map04016

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

982

Amino Acids

106.22

Weight (kDa)

6.13

Isoelectric Point (pI)

28.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	46 - 106	2.1e-14	Heavy-metal-associated domain
HMA	PF00403	125 - 185	3.2e-13	Heavy-metal-associated domain
E1-E2_ATPase	PF00122	429 - 535	1.4e-23	P-type ATPase actuator domain
Hydrolase	PF00702	644 - 867	5.1e-34	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63440
fragaria_vesca	FvH4_5g02090 FvH4_5g02090 FvH4_5g02091 FvH4_5g02091 FvH4_5g02091 FvH4_5g02091
malus_domestica	MD06G1080800.v1.1 MD06G1080900.v1.1 MD14G1102600.v1.1
prunus_persica	Prupe.5G097900_v2.0.a1 Prupe.5G097900_v2.0.a1 Prupe.5G098000_v2.0.a1
pyrus_communis	pycom06g07780 pycom06g07790 pycom14g09890
rosa_chinensis	RchiOBHm_Chr7g0197781 RchiOBHm_Chr7g0198111 RchiOBHm_Chr7g0198141
rosa_laevigata	RLG00000003885 RLG00000003888 RLG00000019170
rosa_multiflora	Rmu_sc0000221.1_g000018 Rmu_sc0000221.1_g000030 Rmu_sc0006732.1_g000016
rosa_roxburghii	Rroxscaffold_3G00257940 Rroxscaffold_3G00257970 Rroxscaffold_3G00257990
rosa_rugosa	Rorug07G0045700 Rorug07G0045700 Rorug07G0045800 Rorug07G0045800 Rorug07G0045900
rosa_samantha	Rh7AG169100 Rh7AG169200 Rh7BG169900 Rh7BG172300 Rh7CG178600 Rh7CG178700 Rh7DG169200 Rh7DG171400 Rh7DG171800
rosa_wichuraiana	Rw7G014570 Rw7G014780 Rw7G014790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	989
Acc36I	ACCTGC	1 cut(s)	167
AccB1I	GGYRCC	2 cut(s)	119, 1288
AccB7I	CCANNNNNTGG	2 cut(s)	809, 2804
AccI	GTMKAC	4 cut(s)	228, 681, 1004, 1131
AccII	CGCG	5 cut(s)	20, 49, 173, 216, 1477
AciI	CCGC	9 cut(s)	20, 30, 47, 49, 173, 221, 807, 1648, 2594
AcoI	YGGCCR	1 cut(s)	2073
AcsI	RAATTY	9 cut(s)	705, 745, 795, 843, 1658, 1724, 2024, 2102, 2446
AcuI	CTGAAG	4 cut(s)	495, 2301, 2391, 2520
AdeI	CACNNNGTG	1 cut(s)	2173
AfiI	CCNNNNNNNGG	2 cut(s)	809, 2804
AflII	CTTAAG	1 cut(s)	935
AhlI	ACTAGT	1 cut(s)	1190
AjiI	CACGTC	1 cut(s)	232
AjnI	CCWGG	6 cut(s)	664, 802, 928, 1396, 1697, 2362
AjuI	GAANNNNNNNTTGG	6 cut(s)	122, 154, 344, 376, 2657, 2689
AleI	CACNNNNGTG	2 cut(s)	110, 362
Alw21I	GWGCWC	4 cut(s)	237, 1828, 1924, 2766
Alw26I	GTCTC	6 cut(s)	95, 278, 290, 654, 1181, 2893
Alw44I	GTGCAC	1 cut(s)	1920
AlwNI	CAGNNNCTG	2 cut(s)	2279, 2369
Ama87I	CYCGRG	1 cut(s)	2765
AoxI	GGCC	9 cut(s)	22, 50, 132, 737, 1027, 1831, 2073, 2079, 2132
ApaI	GGGCCC	1 cut(s)	741
ApaLI	GTGCAC	1 cut(s)	1920
ApoI	RAATTY	9 cut(s)	705, 745, 795, 843, 1658, 1724, 2024, 2102, 2446
ArsI	GACNNNNNNTTYG	2 cut(s)	533, 565
AseI	ATTAAT	1 cut(s)	567
Asp700I	GAANNNNTTC	2 cut(s)	706, 2714
AspLEI	GCGC	4 cut(s)	173, 1065, 1477, 2143
AspS9I	GGNCC	6 cut(s)	22, 618, 737, 738, 2132, 2230
AsuC2I	CCSGG	3 cut(s)	207, 778, 2131
AsuII	TTCGAA	1 cut(s)	552
AvaI	CYCGRG	1 cut(s)	2765
AvaII	GGWCC	2 cut(s)	618, 2230
BaeGI	GKGCMC	5 cut(s)	122, 250, 741, 1820, 1924
BaeI	ACNNNNGTAYC	4 cut(s)	1742, 1775, 1854, 1887
BalI	TGGCCA	1 cut(s)	2075
BamHI	GGATCC	2 cut(s)	773, 2769
BanI	GGYRCC	2 cut(s)	119, 1288
BanII	GRGCYC	1 cut(s)	741
BbsI	GAAGAC	5 cut(s)	546, 585, 907, 1259, 2268
Bbv12I	GWGCWC	4 cut(s)	237, 1828, 1924, 2766
BbvCI	CCTCAGC	1 cut(s)	2049
BceAI	ACGGC	2 cut(s)	119, 1610
BcgI	CGANNNNNNTGC	2 cut(s)	1927, 1961
BciT130I	CCWGG	6 cut(s)	666, 804, 930, 1398, 1699, 2364
BciVI	GTATCC	2 cut(s)	87, 1743
BclI	TGATCA	2 cut(s)	1677, 1893
BcnI	CCSGG	3 cut(s)	207, 778, 2131
BcoDI	GTCTC	6 cut(s)	95, 278, 290, 654, 1181, 2893
BcuI	ACTAGT	1 cut(s)	1190
BfaI	CTAG	7 cut(s)	1191, 1232, 1829, 1835, 2270, 2306, 2339
BfmI	CTRYAG	3 cut(s)	856, 2043, 2781
BfrI	CTTAAG	1 cut(s)	935
BfuAI	ACCTGC	1 cut(s)	167
BfuI	GTATCC	2 cut(s)	87, 1743
BglI	GCCNNNNNGGC	1 cut(s)	30
BglII	AGATCT	1 cut(s)	595
BlpI	GCTNAGC	2 cut(s)	163, 971
BmcAI	AGTACT	1 cut(s)	854
Bme1390I	CCNGG	9 cut(s)	207, 666, 778, 804, 930, 1398, 1699, 2131, 2364
Bme18I	GGWCC	2 cut(s)	618, 2230
BmeT110I	CYCGRG	1 cut(s)	2765
BmgBI	CACGTC	1 cut(s)	232
BmgT120I	GGNCC	6 cut(s)	22, 618, 737, 738, 2132, 2230
BmiI	GGNNCC	6 cut(s)	121, 739, 740, 775, 1290, 2771
BmrFI	CCNGG	9 cut(s)	207, 666, 778, 804, 930, 1398, 1699, 2131, 2364
BmrI	ACTGGG	2 cut(s)	1053, 2307
BmsI	GCATC	4 cut(s)	1252, 1886, 2245, 2577
BmuI	ACTGGG	2 cut(s)	1053, 2307
BpiI	GAAGAC	5 cut(s)	546, 585, 907, 1259, 2268
BplI	GAGNNNNNCTC	2 cut(s)	852, 884
BpmI	CTGGAG	4 cut(s)	892, 1769, 1887, 2853
Bpu10I	CCTNAGC	3 cut(s)	466, 1245, 2049
Bpu1102I	GCTNAGC	2 cut(s)	163, 971
Bpu14I	TTCGAA	1 cut(s)	552
BpuEI	CTTGAG	2 cut(s)	2375, 2942
BpuMI	CCSGG	3 cut(s)	207, 778, 2131
BsaI	GGTCTC	2 cut(s)	95, 2893
BsaWI	WCCGGW	2 cut(s)	1009, 2330
BsaXI	ACNNNNNCTCC	6 cut(s)	47, 77, 1506, 1536, 2138, 2168
Bsc4I	CCNNNNNNNGG	2 cut(s)	809, 2804
Bse3DI	GCAATG	5 cut(s)	1058, 1203, 2238, 2631, 2847
BseBI	CCWGG	6 cut(s)	666, 804, 930, 1398, 1699, 2364
BseGI	GGATG	6 cut(s)	924, 1090, 1423, 1877, 2686, 2798
BseLI	CCNNNNNNNGG	2 cut(s)	809, 2804
BseMI	GCAATG	5 cut(s)	1058, 1203, 2238, 2631, 2847
BseMII	CTCAG	6 cut(s)	87, 177, 985, 1133, 1625, 2040
BseRI	GAGGAG	1 cut(s)	113
BseSI	GKGCMC	5 cut(s)	122, 250, 741, 1820, 1924
BsgI	GTGCAG	2 cut(s)	388, 1034
Bsh1236I	CGCG	5 cut(s)	20, 49, 173, 216, 1477
BshFI	GGCC	9 cut(s)	24, 52, 134, 739, 1029, 1833, 2075, 2081, 2134
BshNI	GGYRCC	2 cut(s)	119, 1288
BsiHKAI	GWGCWC	4 cut(s)	237, 1828, 1924, 2766
BsiHKCI	CYCGRG	1 cut(s)	2765
BsiSI	CCGG	6 cut(s)	206, 777, 1010, 1030, 2130, 2331
BslFI	GGGAC	2 cut(s)	1449, 1972
BslI	CCNNNNNNNGG	2 cut(s)	809, 2804
BsmAI	GTCTC	6 cut(s)	95, 278, 290, 654, 1181, 2893
BsmFI	GGGAC	2 cut(s)	1449, 1972
BsmI	GAATGC	1 cut(s)	2098
BsnI	GGCC	9 cut(s)	24, 52, 134, 739, 1029, 1833, 2075, 2081, 2134
Bso31I	GGTCTC	2 cut(s)	95, 2893
BsoBI	CYCGRG	1 cut(s)	2765
Bsp119I	TTCGAA	1 cut(s)	552
Bsp120I	GGGCCC	1 cut(s)	737
Bsp1286I	GDGCHC	8 cut(s)	122, 237, 250, 741, 1820, 1828, 1924, 2766
Bsp1407I	TGTACA	2 cut(s)	445, 921
Bsp1720I	GCTNAGC	2 cut(s)	163, 971
Bsp19I	CCATGG	3 cut(s)	909, 1729, 1761
Bsp68I	TCGCGA	1 cut(s)	216
BspACI	CCGC	9 cut(s)	20, 30, 47, 49, 173, 221, 807, 1648, 2594
BspANI	GGCC	9 cut(s)	24, 52, 134, 739, 1029, 1833, 2075, 2081, 2134
BspCNI	CTCAG	6 cut(s)	88, 176, 984, 1134, 1624, 2041
BspFNI	CGCG	5 cut(s)	20, 49, 173, 216, 1477
BspHI	TCATGA	1 cut(s)	691
BspLI	GGNNCC	6 cut(s)	121, 739, 740, 775, 1290, 2771
BspMAI	CTGCAG	2 cut(s)	2047, 2785
BspMI	ACCTGC	1 cut(s)	167
BspQI	GCTCTTC	2 cut(s)	412, 2660
BspT104I	TTCGAA	1 cut(s)	552
BspT107I	GGYRCC	2 cut(s)	119, 1288
BspTI	CTTAAG	1 cut(s)	935
BspTNI	GGTCTC	2 cut(s)	95, 2893
BsrDI	GCAATG	5 cut(s)	1058, 1203, 2238, 2631, 2847
BsrGI	TGTACA	2 cut(s)	445, 921
Bst2UI	CCWGG	6 cut(s)	666, 804, 930, 1398, 1699, 2364
Bst4CI	ACNGT	9 cut(s)	245, 415, 611, 648, 1507, 1522, 2060, 2479, 2548
Bst6I	CTCTTC	7 cut(s)	191, 412, 657, 814, 2112, 2660, 2798
BstAFI	CTTAAG	1 cut(s)	935
BstAPI	GCANNNNNTGC	4 cut(s)	159, 402, 2618, 2846
BstAUI	TGTACA	2 cut(s)	445, 921
BstBI	TTCGAA	1 cut(s)	552
BstC8I	GCNNGC	8 cut(s)	22, 169, 432, 1779, 1816, 2289, 2532, 2623
BstDSI	CCRYGG	4 cut(s)	47, 909, 1729, 1761
BstF5I	GGATG	6 cut(s)	924, 1090, 1423, 1877, 2686, 2798
BstFNI	CGCG	5 cut(s)	20, 49, 173, 216, 1477
BstHHI	GCGC	4 cut(s)	173, 1065, 1477, 2143
BstMAI	GTCTC	6 cut(s)	95, 278, 290, 654, 1181, 2893
BstNI	CCWGG	6 cut(s)	666, 804, 930, 1398, 1699, 2364
BstSCI	CCNGG	9 cut(s)	205, 664, 776, 802, 928, 1396, 1697, 2129, 2362
BstSFI	CTRYAG	3 cut(s)	856, 2043, 2781
BstSLI	GKGCMC	5 cut(s)	122, 250, 741, 1820, 1924
BstUI	CGCG	5 cut(s)	20, 49, 173, 216, 1477
BstV2I	GAAGAC	5 cut(s)	546, 585, 907, 1259, 2268
BstX2I	RGATCY	4 cut(s)	595, 773, 1794, 2769
BstXI	CCANNNNNNTGG	2 cut(s)	112, 1279
BstYI	RGATCY	4 cut(s)	595, 773, 1794, 2769
BsuI	GTATCC	2 cut(s)	87, 1743
BsuRI	GGCC	9 cut(s)	24, 52, 134, 739, 1029, 1833, 2075, 2081, 2134
BtgI	CCRYGG	4 cut(s)	47, 909, 1729, 1761
BtgZI	GCGATG	1 cut(s)	2567
BtrI	CACGTC	1 cut(s)	232
BtsCI	GGATG	6 cut(s)	924, 1090, 1423, 1877, 2686, 2798
BtuMI	TCGCGA	1 cut(s)	216
BveI	ACCTGC	1 cut(s)	167
Cac8I	GCNNGC	8 cut(s)	22, 169, 432, 1779, 1816, 2289, 2532, 2623
CaiI	CAGNNNCTG	2 cut(s)	2279, 2369
CciI	TCATGA	1 cut(s)	691
CfoI	GCGC	4 cut(s)	173, 1065, 1477, 2143
Cfr13I	GGNCC	6 cut(s)	22, 618, 737, 738, 2132, 2230
Cfr42I	CCGCGG	1 cut(s)	50
CseI	GACGC	1 cut(s)	1466
CsiI	ACCWGGT	1 cut(s)	2362
DraIII	CACNNNGTG	1 cut(s)	2173
EaeI	YGGCCR	1 cut(s)	2073
Eam1104I	CTCTTC	7 cut(s)	191, 412, 657, 814, 2112, 2660, 2798
EarI	CTCTTC	7 cut(s)	191, 412, 657, 814, 2112, 2660, 2798
Eco147I	AGGCCT	1 cut(s)	1833
Eco24I	GRGCYC	1 cut(s)	741
Eco31I	GGTCTC	2 cut(s)	95, 2893
Eco47I	GGWCC	2 cut(s)	618, 2230
Eco57I	CTGAAG	4 cut(s)	495, 2301, 2391, 2520
Eco88I	CYCGRG	1 cut(s)	2765
EcoO109I	RGGNCCY	2 cut(s)	737, 738
EcoRI	GAATTC	1 cut(s)	2024
EcoRII	CCWGG	6 cut(s)	664, 802, 928, 1396, 1697, 2362
EcoT38I	GRGCYC	1 cut(s)	741
FalI	AAGNNNNNCTT	6 cut(s)	546, 578, 929, 961, 2657, 2689
FaqI	GGGAC	2 cut(s)	1449, 1972
FauI	CCCGC	2 cut(s)	13, 166
FbaI	TGATCA	2 cut(s)	1677, 1893
FblI	GTMKAC	4 cut(s)	228, 681, 1004, 1131
FokI	GGATG	6 cut(s)	911, 1097, 1430, 1864, 2693, 2785
FriOI	GRGCYC	1 cut(s)	741
FspBI	CTAG	7 cut(s)	1191, 1232, 1829, 1835, 2270, 2306, 2339
GlaI	GCGC	4 cut(s)	172, 1064, 1476, 2142
GsuI	CTGGAG	4 cut(s)	892, 1769, 1887, 2853
HaeIII	GGCC	9 cut(s)	24, 52, 134, 739, 1029, 1833, 2075, 2081, 2134
HapII	CCGG	6 cut(s)	206, 777, 1010, 1030, 2130, 2331
HgaI	GACGC	1 cut(s)	1466
HhaI	GCGC	4 cut(s)	173, 1065, 1477, 2143
Hin6I	GCGC	4 cut(s)	171, 1063, 1475, 2141
HinP1I	GCGC	4 cut(s)	171, 1063, 1475, 2141
HincII	GTYRAC	6 cut(s)	229, 277, 607, 1311, 1990, 2056
HindII	GTYRAC	6 cut(s)	229, 277, 607, 1311, 1990, 2056
HpaI	GTTAAC	3 cut(s)	277, 1990, 2056
HpaII	CCGG	6 cut(s)	206, 777, 1010, 1030, 2130, 2331
Hpy188I	TCNGA	8 cut(s)	81, 1261, 1417, 1570, 1614, 1635, 2108, 2350
Hpy188III	TCNNGA	6 cut(s)	215, 692, 871, 2002, 2021, 2767
Hpy99I	CGWCG	1 cut(s)	233
HpyCH4III	ACNGT	9 cut(s)	245, 415, 611, 648, 1507, 1522, 2060, 2479, 2548
HpyCH4IV	ACGT	2 cut(s)	231, 359
HpySE526I	ACGT	2 cut(s)	231, 359
HspAI	GCGC	4 cut(s)	171, 1063, 1475, 2141
Ksp22I	TGATCA	2 cut(s)	1677, 1893
KspAI	GTTAAC	3 cut(s)	277, 1990, 2056
KspI	CCGCGG	1 cut(s)	50
LguI	GCTCTTC	2 cut(s)	412, 2660
LmnI	GCTCC	5 cut(s)	812, 982, 1630, 2834, 2908
LweI	GCATC	4 cut(s)	1252, 1886, 2245, 2577
MabI	ACCWGGT	1 cut(s)	2362
MaeI	CTAG	7 cut(s)	1191, 1232, 1829, 1835, 2270, 2306, 2339
MaeII	ACGT	2 cut(s)	231, 359
MaeIII	GTNAC	5 cut(s)	91, 2165, 2326, 2419, 2426
MfeI	CAATTG	5 cut(s)	1968, 2431, 2613, 2637, 2694
MflI	RGATCY	4 cut(s)	595, 773, 1794, 2769
MhlI	GDGCHC	8 cut(s)	122, 237, 250, 741, 1820, 1828, 1924, 2766
MlsI	TGGCCA	1 cut(s)	2075
MluNI	TGGCCA	1 cut(s)	2075
MlyI	GAGTC	8 cut(s)	134, 870, 1306, 1613, 1878, 1954, 1992, 2570
MmeI	TCCRAC	2 cut(s)	292, 1543
Mox20I	TGGCCA	1 cut(s)	2075
MroXI	GAANNNNTTC	2 cut(s)	706, 2714
MscI	TGGCCA	1 cut(s)	2075
MslI	CAYNNNNRTG	7 cut(s)	110, 152, 362, 693, 755, 1449, 2417
Msp20I	TGGCCA	1 cut(s)	2075
MspA1I	CMGCKG	4 cut(s)	30, 49, 523, 2048
MspCI	CTTAAG	1 cut(s)	935
MspI	CCGG	6 cut(s)	206, 777, 1010, 1030, 2130, 2331
MspR9I	CCNGG	9 cut(s)	207, 666, 778, 804, 930, 1398, 1699, 2131, 2364
MunI	CAATTG	5 cut(s)	1968, 2431, 2613, 2637, 2694
Mva1269I	GAATGC	1 cut(s)	2098
MvaI	CCWGG	6 cut(s)	666, 804, 930, 1398, 1699, 2364
MvnI	CGCG	5 cut(s)	20, 49, 173, 216, 1477
NciI	CCSGG	3 cut(s)	207, 778, 2131
NcoI	CCATGG	3 cut(s)	909, 1729, 1761
NlaIV	GGNNCC	6 cut(s)	121, 739, 740, 775, 1290, 2771
NmuCI	GTSAC	5 cut(s)	91, 2165, 2326, 2419, 2426
NruI	TCGCGA	1 cut(s)	216
NspV	TTCGAA	1 cut(s)	552
OliI	CACNNNNGTG	2 cut(s)	110, 362
PagI	TCATGA	1 cut(s)	691
PasI	CCCWGGG	1 cut(s)	665
PceI	AGGCCT	1 cut(s)	1833
PciSI	GCTCTTC	2 cut(s)	412, 2660
PctI	GAATGC	1 cut(s)	2098
PdmI	GAANNNNTTC	2 cut(s)	706, 2714
PfeI	GAWTC	6 cut(s)	211, 419, 549, 997, 2122, 2302
PflMI	CCANNNNNTGG	2 cut(s)	809, 2804
PleI	GAGTC	8 cut(s)	133, 869, 1306, 1612, 1877, 1954, 1992, 2570
PpsI	GAGTC	8 cut(s)	133, 869, 1306, 1612, 1877, 1954, 1992, 2570
PshBI	ATTAAT	1 cut(s)	567
PsiI	TTATAA	1 cut(s)	989
Psp6I	CCWGG	6 cut(s)	664, 802, 928, 1396, 1697, 2362
PspGI	CCWGG	6 cut(s)	664, 802, 928, 1396, 1697, 2362
PspN4I	GGNNCC	6 cut(s)	121, 739, 740, 775, 1290, 2771
PspOMI	GGGCCC	1 cut(s)	737
PspPI	GGNCC	6 cut(s)	22, 618, 737, 738, 2132, 2230
PstI	CTGCAG	2 cut(s)	2047, 2785
PstNI	CAGNNNCTG	2 cut(s)	2279, 2369
PsuI	RGATCY	4 cut(s)	595, 773, 1794, 2769
PvuII	CAGCTG	2 cut(s)	523, 2048
RruI	TCGCGA	1 cut(s)	216
RseI	CAYNNNNRTG	7 cut(s)	110, 152, 362, 693, 755, 1449, 2417
SacII	CCGCGG	1 cut(s)	50
SalI	GTCGAC	1 cut(s)	227
SapI	GCTCTTC	2 cut(s)	412, 2660
Sau96I	GGNCC	6 cut(s)	22, 618, 737, 738, 2132, 2230
ScaI	AGTACT	1 cut(s)	854
SchI	GAGTC	8 cut(s)	134, 870, 1306, 1613, 1878, 1954, 1992, 2570
ScrFI	CCNGG	9 cut(s)	207, 666, 778, 804, 930, 1398, 1699, 2131, 2364
SduI	GDGCHC	8 cut(s)	122, 237, 250, 741, 1820, 1828, 1924, 2766
SexAI	ACCWGGT	1 cut(s)	2362
SfaNI	GCATC	4 cut(s)	1252, 1886, 2245, 2577
SfcI	CTRYAG	3 cut(s)	856, 2043, 2781
Sfr303I	CCGCGG	1 cut(s)	50
SfuI	TTCGAA	1 cut(s)	552
SgrBI	CCGCGG	1 cut(s)	50
SinI	GGWCC	2 cut(s)	618, 2230
SmiMI	CAYNNNNRTG	7 cut(s)	110, 152, 362, 693, 755, 1449, 2417
SmlI	CTYRAG	3 cut(s)	935, 2390, 2921
SmoI	CTYRAG	3 cut(s)	935, 2390, 2921
SpeI	ACTAGT	1 cut(s)	1190
SseBI	AGGCCT	1 cut(s)	1833
SsiI	CCGC	9 cut(s)	20, 30, 47, 49, 173, 221, 807, 1648, 2594
SspMI	CTAG	7 cut(s)	1191, 1232, 1829, 1835, 2270, 2306, 2339
StuI	AGGCCT	1 cut(s)	1833
StyD4I	CCNGG	9 cut(s)	205, 664, 776, 802, 928, 1396, 1697, 2129, 2362
TaaI	ACNGT	9 cut(s)	245, 415, 611, 648, 1507, 1522, 2060, 2479, 2548
TaiI	ACGT	2 cut(s)	234, 362
TaqI	TCGA	6 cut(s)	228, 552, 1947, 2020, 2253, 2943
TaqII	GACCGA	1 cut(s)	635
TatI	WGTACW	4 cut(s)	445, 852, 921, 1888
TauI	GCSGC	4 cut(s)	33, 49, 52, 2597
TfiI	GAWTC	6 cut(s)	211, 419, 549, 997, 2122, 2302
TseFI	GTSAC	5 cut(s)	91, 2165, 2326, 2419, 2426
Tsp45I	GTSAC	5 cut(s)	91, 2165, 2326, 2419, 2426
TspGWI	ACGGA	3 cut(s)	133, 281, 1126
Van91I	CCANNNNNTGG	2 cut(s)	809, 2804
Vha464I	CTTAAG	1 cut(s)	935
VneI	GTGCAC	1 cut(s)	1920
VpaK11BI	GGWCC	2 cut(s)	618, 2230
VspI	ATTAAT	1 cut(s)	567
XapI	RAATTY	9 cut(s)	705, 745, 795, 843, 1658, 1724, 2024, 2102, 2446
XcmI	CCANNNNNNNNNTGG	1 cut(s)	112
XmiI	GTMKAC	4 cut(s)	228, 681, 1004, 1131
XmnI	GAANNNNTTC	2 cut(s)	706, 2714
XspI	CTAG	7 cut(s)	1191, 1232, 1829, 1835, 2270, 2306, 2339
ZrmI	AGTACT	1 cut(s)	854

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.