Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002025

Physical Location & Seq

Genomic Coordinates Reverse (-)

13431517 .. 13436029

Gene Structure 4513 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG172300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2946 bp

ATGAGTTGCATTTGCAGGGATTGCTTGGGTGGCATGTTACCCGGGCCACGGCCACACTACCCCTCGATGCCCCGATACCCGAAAGGCACGTCTCCAGAAGCAACGAGGAAGGCCAGGGGTTCTGAGGTGAAGGCCTTGTTCTCTGTGGTTGGAATGACATGTGCTACCTGTGCCGGGTCTGTGGAGAAGGCGGTGAAGCGGCTCCCGGGGATACAGGAGGCCGCCGTGGACGTGTTGAACAACACAGCCCTTGTTCTCTACTATCCCAGCTGCTTCGTCAATGAGGACAAAATATGTGAGGCTATTAAAGCTGCTGGATTTGAAGCTAAACTGATTAAGCTGGAGATGAATGACAAAACCAGACAAGTATGCAGAATAAGCATAAGTGGAATGACTTGCACGTCTTGCTCCTCCACTGTTGAATCAGCTCTGCAAGCAATTCATGGAGTGCAAGGAGCTCAGGTGGCCTTAGCAACTGAAGAAGCAGAGATTCATTATGACCCAAGCATTGTTACCTCCCATCAGCTATTGGAAACCATAGAAATCACCGGATTCGAAGCCAAACTTATTAGTTTAGGGGAAGGCATTAGCAAGATAGAGCTTAAAGTTGATGGTATAAAGGTTGGACAGTCGATTAGAGCAATAGCAAAAACTCTTGAAGCACTTCCTGGGGTTCAAGACATAGAGACATTTCCTGAACTCAACAAGATTTCTATTTCTTATAAACCAGAGATGATAGGACCAAGAACCCTCATCGAAGCCATCGAGTCATCAGGGTCCGCGCATTTCAAAGCAATGATATACCCGGAAGGAGAAAAATACACTCATAGACAGAAGGAAATTAAGCAATACTATAAATTCTTCTTATGGAGTTTGTTTTGTACAATTCCTGTGTTTTTAACCTCCATGGTCTTGATGTATATTCCTGGAATTAAGAAGGTGTTGGATGTCAAAATTGTGAATAAGTTGAGTGTTGGTCAGATTCTGAGGTGGGAGTTGTCCACTCCTGTGCAGTTCATCATAGGCAAGAGGTTCTACATTGGAGCTTACAAAGCATTGCGCCATGGTTCAGCTAACATGGATGTTTTGATTGCCTTGGGAACAAATGCAGCCTACTTCTACTCGGTCTACATAGTTTTAAGATCTGCAACCCATAAGGATTTCAAGGGTACAGATTTTTTTGAGACTAGTTCAATGCTTATTACATTCATCCTATTAGGAAAGTATCTAGAGGTCTTGGCAAAAGGCAAGACATCTGAGGCCATTGCCAAGCTAATGGACTTGGCACCAGAAAAGGCAACACTGCTAACTTTGGGTGAGGAAGGAAATGTGATAAATGAACAAGAAATGGATAGCCGGTTGATACAAAAGAACGATCTGATTAAAGTTATTCCTGGTGCCAAAGTAGCTTGTGATGGTGTTGTTATGTGGGGACAAAGTCATGTGAATGAAAGCATGATAACTGGAGAAGCACGGCCAGTGACAAAAAAGAAGGATGATGCAGTTATTGGAGGCACTGTGAATGAGAATGGAGTGTTGCATATTAAGGCAACAAGAGTTGGGTCAGAGAGTGCTCTTTCACAGATTGTAAGGCTTGTCGAGTCTGCCCAGATGGCTAAAGCTCCAGTACAAAAGTTTGCTGATCGCATTTCCAAATACTTTGTGCCAGTGGTCATCACACTTTCATTTTCGACTTGGCTTGCCTGGTTCTTAGGAGGGAAGTTCCACAGGTATCCACGTTCTTGGATACCATCTTCAATCGATAGTTTTGAGCTTGCTCTTCAGTTTGGGATCTCGGTCATGGTCATTGCCTGCCCTTGTGCTTTAGGCCTAGCAACTCCTACAGCCGTTATGGTTGGTACAGGAGTTGGTGCATCGCAAGGTATACTGATCAAAGGCGGACATGCATTACAGAGTGCGCATAAGGTGAACTGCATTGTGTTTGACAAGACAGGGACTCTCACAGTTGGGAAGCCAGTGGTTGTTAGCACCAAAATCTTTAACAAAATGCTACCTCAAAAATTCTATGAACTAGTTGCTGCAACTGAGGTAAACAGTGAGCACCCACTAGCCAAAGCTATTGTGGAATATGCCAAGAAAATCAGAGAAGATGAAGAGAATTCTACCTGGCCAGAAGCACAAAACTTCGCATCCCTTACCGGCCAAGGAGTAAAGGCAGTTGTTCGAAATAAGGAAATAACTGTAGGCAACAAGAGCTTAATGTTGGCCATTAACATTGCGATTCCAGAGGAGGCTGAAGTTGCACTTGCACAAACTGAAGCATTGGCTCAAACTGGGATTTTAATAGCTGTAGATAACGAAATAGCAGGAATTATAGCCATATCTGATCCACTGAAACCTGGTGCTCGAGAAGTCATTTCCATACTCAAGTCTATGGGAGTTAGAAGTATCATGGTTACAGGTGACAATTGGGGTACAGCCAATTCTATTGCCAAGGAAACTGAAATTGAGACGGTGATTGCAGAAGCCAAACCCCAGCACAAAGCTGAGAAAATAAAAGATTTGCAGGCTTCAGGCTACACCGTGGCAATGGTGGGAGATGGGATCAATGACTCACCGGCACTTGTGGCAGCAGATGTTGGAATGGCAATTGGTGCTGGCACAGACATTGCGATCGAGGCAGCTGACATTGTTCTTATGAAGAGCAACTTGGAAGATGTTATAACAGCCATTGACCTTTCCCGGAAAACCTTTTCCCGTATTCGTCTGAACTACATTTGGGCATTGGGTTACAATGTGCTTGGAATCCCGATAGCTGCAGGGGTCCTTTTTCCCTCCACTAGGTTCAGATTACCACCATGGATTGCAGGAGCTGCAATGGCGGCATCCTCCGTTAGTGTTGTATGCTGTTCTCTGTTGTTGAAGAACTACAAGAGACCCAAGAAGTTGGATATCCTTGAGATACATGAAATAAGGGTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0008150 GO:0008324 GO:0009636 GO:0010035 GO:0010038 GO:0010273 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046688 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061687 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0097501 GO:0098655 GO:0098660 GO:0098662 GO:0098754 GO:0099131 GO:0099132 GO:1990169

KEGG Pathways

Metabolic & Signaling

ko01524 ko04016 map01524 map04016

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

981

Amino Acids

106.34

Weight (kDa)

8.34

Isoelectric Point (pI)

37.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	47 - 108	3.6e-14	Heavy-metal-associated domain
HMA	PF00403	126 - 186	1.3e-12	Heavy-metal-associated domain
E1-E2_ATPase	PF00122	428 - 534	3.4e-25	P-type ATPase actuator domain
Hydrolase	PF00702	644 - 866	1.3e-34	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63440
fragaria_vesca	FvH4_5g02090 FvH4_5g02090 FvH4_5g02091 FvH4_5g02091 FvH4_5g02091 FvH4_5g02091
malus_domestica	MD06G1080800.v1.1 MD06G1080900.v1.1 MD14G1102600.v1.1
prunus_persica	Prupe.5G097900_v2.0.a1 Prupe.5G097900_v2.0.a1 Prupe.5G098000_v2.0.a1
pyrus_communis	pycom06g07780 pycom06g07790 pycom14g09890
rosa_chinensis	RchiOBHm_Chr7g0197781 RchiOBHm_Chr7g0198111 RchiOBHm_Chr7g0198141
rosa_laevigata	RLG00000003885 RLG00000003888 RLG00000019170
rosa_multiflora	Rmu_sc0000221.1_g000018 Rmu_sc0000221.1_g000030 Rmu_sc0006732.1_g000016
rosa_roxburghii	Rroxscaffold_3G00257940 Rroxscaffold_3G00257970 Rroxscaffold_3G00257990
rosa_rugosa	Rorug07G0045700 Rorug07G0045700 Rorug07G0045800 Rorug07G0045800 Rorug07G0045900
rosa_samantha	Rh7AG169100 Rh7AG169200 Rh7BG169900 Rh7BG172300 Rh7CG178600 Rh7CG178700 Rh7DG169200 Rh7DG171400 Rh7DG171800
rosa_wichuraiana	Rw7G014570 Rw7G014780 Rw7G014790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	723, 2684
AasI	GACNNNNNNGTC	1 cut(s)	400
Acc16I	TGCGCA	1 cut(s)	1920
AccB1I	GGYRCC	2 cut(s)	1285, 1397
AccI	GTMKAC	2 cut(s)	1128, 1885
AccII	CGCG	1 cut(s)	782
AciI	CCGC	6 cut(s)	191, 199, 222, 780, 1899, 2843
AclWI	GGATC	3 cut(s)	1799, 2342, 2573
AcoI	YGGCCR	5 cut(s)	50, 1475, 2129, 2161, 2226
AcsI	RAATTY	3 cut(s)	857, 2021, 2119
AcuI	CTGAAG	5 cut(s)	498, 1766, 2277, 2298, 2517
AfaI	GTAC	5 cut(s)	883, 1171, 1629, 1861, 2437
AfiI	CCNNNNNNNGG	3 cut(s)	48, 174, 2802
AflIII	ACRYGT	2 cut(s)	158, 231
AhlI	ACTAGT	2 cut(s)	1187, 2032
AjiI	CACGTC	3 cut(s)	90, 232, 402
AjnI	CCWGG	7 cut(s)	113, 667, 925, 1393, 1703, 2126, 2359
AjuI	GAANNNNNNNTTGG	2 cut(s)	2654, 2686
AleI	CACNNNNGTG	1 cut(s)	1007
Alw21I	GWGCWC	4 cut(s)	460, 1576, 2064, 2368
Alw26I	GTCTC	5 cut(s)	96, 680, 1178, 2465, 2890
AlwI	GGATC	3 cut(s)	1799, 2342, 2573
AlwNI	CAGNNNCTG	2 cut(s)	985, 2834
Ama87I	CYCGRG	3 cut(s)	41, 205, 2367
ApeKI	GCWGC	8 cut(s)	270, 311, 1109, 2039, 2591, 2642, 2777, 2834
ApoI	RAATTY	3 cut(s)	857, 2021, 2119
ArsI	GACNNNNNNTTYG	2 cut(s)	74, 106
Asp700I	GAANNNNTTC	1 cut(s)	663
AspLEI	GCGC	3 cut(s)	784, 1062, 1921
AspS9I	GGNCC	4 cut(s)	44, 740, 777, 2785
AsuC2I	CCSGG	7 cut(s)	42, 43, 175, 206, 207, 806, 2704
AsuHPI	GGTGA	8 cut(s)	139, 205, 538, 1328, 1939, 2435, 2488, 2568
AsuII	TTCGAA	2 cut(s)	555, 2185
AvaI	CYCGRG	3 cut(s)	41, 205, 2367
AvaII	GGWCC	3 cut(s)	740, 777, 2785
BaeI	ACNNNNGTAYC	2 cut(s)	1851, 1884
BalI	TGGCCA	2 cut(s)	2131, 2228
BanI	GGYRCC	2 cut(s)	1285, 1397
BanII	GRGCYC	1 cut(s)	460
Bbv12I	GWGCWC	4 cut(s)	460, 1576, 2064, 2368
BbvI	GCAGC	8 cut(s)	257, 298, 1121, 2026, 2603, 2654, 2764, 2821
BccI	CCATC	7 cut(s)	528, 605, 770, 1409, 1606, 1759, 2555
BceAI	ACGGC	4 cut(s)	65, 209, 1490, 1832
BciT130I	CCWGG	7 cut(s)	115, 669, 927, 1395, 1705, 2128, 2361
BciVI	GTATCC	3 cut(s)	204, 1740, 1743
BclI	TGATCA	1 cut(s)	1890
BcnI	CCSGG	7 cut(s)	42, 43, 175, 206, 207, 806, 2704
BcoDI	GTCTC	5 cut(s)	96, 680, 1178, 2465, 2890
BcuI	ACTAGT	2 cut(s)	1187, 2032
BfaI	CTAG	6 cut(s)	1188, 1229, 1832, 2033, 2069, 2802
BfmI	CTRYAG	4 cut(s)	1842, 2202, 2310, 2778
BfuI	GTATCC	3 cut(s)	204, 1740, 1743
BglI	GCCNNNNNGGC	1 cut(s)	1613
BglII	AGATCT	1 cut(s)	1142
Bme18I	GGWCC	3 cut(s)	740, 777, 2785
BmeT110I	CYCGRG	3 cut(s)	41, 205, 2367
BmgBI	CACGTC	3 cut(s)	90, 232, 402
BmgT120I	GGNCC	4 cut(s)	44, 740, 777, 2785
BmiI	GGNNCC	5 cut(s)	203, 778, 1287, 1399, 2786
BmrI	ACTGGG	1 cut(s)	2304
BmsI	GCATC	5 cut(s)	57, 1489, 1883, 2159, 2855
BmuI	ACTGGG	1 cut(s)	2304
BpmI	CTGGAG	4 cut(s)	78, 362, 1485, 1608
Bpu10I	CCTNAGC	2 cut(s)	459, 469
Bpu14I	TTCGAA	2 cut(s)	555, 2185
BpuEI	CTTGAG	2 cut(s)	2372, 2939
BpuMI	CCSGG	7 cut(s)	42, 43, 175, 206, 207, 806, 2704
Bsa29I	ATCGAT	1 cut(s)	1761
BsaI	GGTCTC	1 cut(s)	2890
BsaWI	WCCGGW	1 cut(s)	548
BsaXI	ACNNNNNCTCC	4 cut(s)	447, 477, 1503, 1533
Bsc4I	CCNNNNNNNGG	3 cut(s)	48, 174, 2802
Bse118I	RCCGGY	3 cut(s)	1356, 2159, 2578
Bse1I	ACTGG	6 cut(s)	1468, 1478, 1625, 1667, 1976, 2299
Bse3DI	GCAATG	8 cut(s)	801, 1055, 1263, 1806, 2235, 2556, 2628, 2844
BseBI	CCWGG	7 cut(s)	115, 669, 927, 1395, 1705, 2128, 2361
BseCI	ATCGAT	1 cut(s)	1761
BseGI	GGATG	6 cut(s)	952, 1087, 1209, 1501, 2150, 2846
BseLI	CCNNNNNNNGG	3 cut(s)	48, 174, 2802
BseMI	GCAATG	8 cut(s)	801, 1055, 1263, 1806, 2235, 2556, 2628, 2844
BseMII	CTCAG	6 cut(s)	114, 473, 977, 1248, 2037, 2499
BseNI	ACTGG	6 cut(s)	1468, 1478, 1625, 1667, 1976, 2299
BseRI	GAGGAG	2 cut(s)	400, 2264
BseXI	GCAGC	8 cut(s)	257, 298, 1121, 2026, 2603, 2654, 2764, 2821
BseYI	CCCAGC	2 cut(s)	266, 2496
BsgI	GTGCAG	1 cut(s)	1031
Bsh1236I	CGCG	1 cut(s)	782
Bsh1285I	CGRYCG	1 cut(s)	2637
BshNI	GGYRCC	2 cut(s)	1285, 1397
BshVI	ATCGAT	1 cut(s)	1761
BsiEI	CGRYCG	1 cut(s)	2637
BsiHKAI	GWGCWC	4 cut(s)	460, 1576, 2064, 2368
BsiHKCI	CYCGRG	3 cut(s)	41, 205, 2367
BsiSI	CCGG	9 cut(s)	42, 174, 206, 549, 806, 1357, 2160, 2579, 2704
BslFI	GGGAC	2 cut(s)	1446, 1969
BslI	CCNNNNNNNGG	3 cut(s)	48, 174, 2802
BsmAI	GTCTC	5 cut(s)	96, 680, 1178, 2465, 2890
BsmBI	CGTCTC	2 cut(s)	96, 2465
BsmFI	GGGAC	2 cut(s)	1446, 1969
Bso31I	GGTCTC	1 cut(s)	2890
BsoBI	CYCGRG	3 cut(s)	41, 205, 2367
Bsp119I	TTCGAA	2 cut(s)	555, 2185
Bsp1286I	GDGCHC	4 cut(s)	460, 1576, 2064, 2368
Bsp1407I	TGTACA	1 cut(s)	881
Bsp143I	GATC	8 cut(s)	1142, 1375, 1642, 1791, 1890, 2347, 2565, 2634
Bsp19I	CCATGG	3 cut(s)	906, 1063, 2819
BspACI	CCGC	6 cut(s)	191, 199, 222, 780, 1899, 2843
BspCNI	CTCAG	6 cut(s)	115, 472, 978, 1249, 2038, 2500
BspDI	ATCGAT	1 cut(s)	1761
BspFNI	CGCG	1 cut(s)	782
BspLI	GGNNCC	5 cut(s)	203, 778, 1287, 1399, 2786
BspMAI	CTGCAG	1 cut(s)	2782
BspPI	GGATC	3 cut(s)	1799, 2342, 2573
BspQI	GCTCTTC	2 cut(s)	1785, 2657
BspT104I	TTCGAA	2 cut(s)	555, 2185
BspT107I	GGYRCC	2 cut(s)	1285, 1397
BspTNI	GGTCTC	1 cut(s)	2890
BsrDI	GCAATG	8 cut(s)	801, 1055, 1263, 1806, 2235, 2556, 2628, 2844
BsrFI	RCCGGY	3 cut(s)	1356, 2159, 2578
BsrGI	TGTACA	1 cut(s)	881
BsrI	ACTGG	6 cut(s)	1468, 1478, 1625, 1667, 1976, 2299
BssAI	RCCGGY	3 cut(s)	1356, 2159, 2578
BssMI	GATC	8 cut(s)	1142, 1375, 1642, 1791, 1890, 2347, 2565, 2634
BssNAI	GTATAC	1 cut(s)	1886
BssT1I	CCWWGG	6 cut(s)	906, 1063, 1095, 2164, 2454, 2819
Bst1107I	GTATAC	1 cut(s)	1886
Bst2UI	CCWGG	7 cut(s)	115, 669, 927, 1395, 1705, 2128, 2361
Bst4CI	ACNGT	8 cut(s)	418, 630, 1519, 1966, 2057, 2203, 2476, 2545
Bst6I	CTCTTC	3 cut(s)	1785, 2109, 2657
BstAPI	GCANNNNNTGC	4 cut(s)	21, 405, 2615, 2834
BstAUI	TGTACA	1 cut(s)	881
BstBI	TTCGAA	2 cut(s)	555, 2185
BstC8I	GCNNGC	6 cut(s)	435, 1701, 1776, 1813, 2529, 2620
BstDEI	CTNAG	8 cut(s)	123, 459, 469, 986, 1257, 1711, 2046, 2508
BstDSI	CCRYGG	6 cut(s)	47, 225, 906, 1063, 2544, 2819
BstENI	CCTNNNNNAGG	1 cut(s)	2800
BstF5I	GGATG	6 cut(s)	952, 1087, 1209, 1501, 2150, 2846
BstFNI	CGCG	1 cut(s)	782
BstHHI	GCGC	3 cut(s)	784, 1062, 1921
BstKTI	GATC	8 cut(s)	1145, 1378, 1645, 1794, 1893, 2350, 2568, 2637
BstMAI	GTCTC	5 cut(s)	96, 680, 1178, 2465, 2890
BstMBI	GATC	8 cut(s)	1142, 1375, 1642, 1791, 1890, 2347, 2565, 2634
BstMCI	CGRYCG	1 cut(s)	2637
BstNI	CCWGG	7 cut(s)	115, 669, 927, 1395, 1705, 2128, 2361
BstNSI	RCATGY	3 cut(s)	37, 162, 1907
BstSFI	CTRYAG	4 cut(s)	1842, 2202, 2310, 2778
BstUI	CGCG	1 cut(s)	782
BstV1I	GCAGC	8 cut(s)	257, 298, 1121, 2026, 2603, 2654, 2764, 2821
BstX2I	RGATCY	2 cut(s)	1142, 1791
BstXI	CCANNNNNNTGG	3 cut(s)	1276, 1743, 2908
BstYI	RGATCY	2 cut(s)	1142, 1791
BstZ17I	GTATAC	1 cut(s)	1886
Bsu15I	ATCGAT	1 cut(s)	1761
BsuI	GTATCC	3 cut(s)	204, 1740, 1743
BsuTUI	ATCGAT	1 cut(s)	1761
BtgI	CCRYGG	6 cut(s)	47, 225, 906, 1063, 2544, 2819
BtgZI	GCGATG	1 cut(s)	1860
BtrI	CACGTC	3 cut(s)	90, 232, 402
BtsCI	GGATG	6 cut(s)	952, 1087, 1209, 1501, 2150, 2846
BtsI	GCAGTG	1 cut(s)	1301
BtsIMutI	CAGTG	8 cut(s)	414, 1301, 1485, 1515, 1674, 1983, 2062, 2351
Cac8I	GCNNGC	6 cut(s)	435, 1701, 1776, 1813, 2529, 2620
CaiI	CAGNNNCTG	2 cut(s)	985, 2834
CfoI	GCGC	3 cut(s)	784, 1062, 1921
Cfr10I	RCCGGY	3 cut(s)	1356, 2159, 2578
Cfr13I	GGNCC	4 cut(s)	44, 740, 777, 2785
Cfr9I	CCCGGG	2 cut(s)	41, 205
ClaI	ATCGAT	1 cut(s)	1761
CsiI	ACCWGGT	1 cut(s)	2359
Csp6I	GTAC	5 cut(s)	882, 1170, 1628, 1860, 2436
CviQI	GTAC	5 cut(s)	882, 1170, 1628, 1860, 2436
DdeI	CTNAG	8 cut(s)	123, 459, 469, 986, 1257, 1711, 2046, 2508
DpnI	GATC	8 cut(s)	1144, 1377, 1644, 1793, 1892, 2349, 2567, 2636
DpnII	GATC	8 cut(s)	1142, 1375, 1642, 1791, 1890, 2347, 2565, 2634
DrdI	GACNNNNNNGTC	1 cut(s)	400
DseDI	GACNNNNNNGTC	1 cut(s)	400
EaeI	YGGCCR	5 cut(s)	50, 1475, 2129, 2161, 2226
Eam1104I	CTCTTC	3 cut(s)	1785, 2109, 2657
EarI	CTCTTC	3 cut(s)	1785, 2109, 2657
EciI	GGCGGA	1 cut(s)	1914
Ecl136II	GAGCTC	1 cut(s)	458
Eco130I	CCWWGG	6 cut(s)	906, 1063, 1095, 2164, 2454, 2819
Eco147I	AGGCCT	2 cut(s)	134, 1830
Eco24I	GRGCYC	1 cut(s)	460
Eco31I	GGTCTC	1 cut(s)	2890
Eco32I	GATATC	1 cut(s)	2914
Eco47I	GGWCC	3 cut(s)	740, 777, 2785
Eco53kI	GAGCTC	1 cut(s)	458
Eco57I	CTGAAG	5 cut(s)	498, 1766, 2277, 2298, 2517
Eco88I	CYCGRG	3 cut(s)	41, 205, 2367
EcoICRI	GAGCTC	1 cut(s)	458
EcoNI	CCTNNNNNAGG	1 cut(s)	2800
EcoO109I	RGGNCCY	1 cut(s)	2785
EcoRI	GAATTC	1 cut(s)	2119
EcoRII	CCWGG	7 cut(s)	113, 667, 925, 1393, 1703, 2126, 2359
EcoRV	GATATC	1 cut(s)	2914
EcoT14I	CCWWGG	6 cut(s)	906, 1063, 1095, 2164, 2454, 2819
EcoT22I	ATGCAT	1 cut(s)	1909
EcoT38I	GRGCYC	1 cut(s)	460
ErhI	CCWWGG	6 cut(s)	906, 1063, 1095, 2164, 2454, 2819
Esp3I	CGTCTC	2 cut(s)	96, 2465
FalI	AAGNNNNNCTT	6 cut(s)	549, 581, 2250, 2282, 2654, 2686
FaqI	GGGAC	2 cut(s)	1446, 1969
FbaI	TGATCA	1 cut(s)	1890
FblI	GTMKAC	2 cut(s)	1128, 1885
FokI	GGATG	6 cut(s)	959, 1094, 1196, 1508, 2137, 2833
FriOI	GRGCYC	1 cut(s)	460
FspAI	RTGCGCAY	1 cut(s)	1920
FspBI	CTAG	6 cut(s)	1188, 1229, 1832, 2033, 2069, 2802
FspI	TGCGCA	1 cut(s)	1920
GlaI	GCGC	3 cut(s)	783, 1061, 1920
GsaI	CCCAGC	2 cut(s)	270, 2500
GsuI	CTGGAG	4 cut(s)	78, 362, 1485, 1608
HapII	CCGG	9 cut(s)	42, 174, 206, 549, 806, 1357, 2160, 2579, 2704
HhaI	GCGC	3 cut(s)	784, 1062, 1921
Hin6I	GCGC	3 cut(s)	782, 1060, 1919
HinP1I	GCGC	3 cut(s)	782, 1060, 1919
HpaII	CCGG	9 cut(s)	42, 174, 206, 549, 806, 1357, 2160, 2579, 2704
HphI	GGTGA	8 cut(s)	139, 205, 538, 1328, 1939, 2435, 2488, 2568
Hpy166II	GTNNAC	6 cut(s)	229, 1002, 1129, 1886, 1930, 2053
Hpy188III	TCNNGA	9 cut(s)	95, 656, 677, 695, 913, 1229, 2246, 2369, 2770
Hpy8I	GTNNAC	6 cut(s)	229, 1002, 1129, 1886, 1930, 2053
HpyAV	CCTTC	9 cut(s)	103, 124, 181, 575, 803, 829, 931, 1316, 1486
HpyCH4III	ACNGT	8 cut(s)	418, 630, 1519, 1966, 2057, 2203, 2476, 2545
HpyCH4IV	ACGT	4 cut(s)	89, 231, 401, 1738
HpyF3I	CTNAG	8 cut(s)	123, 459, 469, 986, 1257, 1711, 2046, 2508
HpySE526I	ACGT	4 cut(s)	89, 231, 401, 1738
HspAI	GCGC	3 cut(s)	782, 1060, 1919
Ksp22I	TGATCA	1 cut(s)	1890
Kzo9I	GATC	8 cut(s)	1142, 1375, 1642, 1791, 1890, 2347, 2565, 2634
LguI	GCTCTTC	2 cut(s)	1785, 2657
LmnI	GCTCC	6 cut(s)	207, 413, 455, 1043, 1627, 2831
Lsp1109I	GCAGC	8 cut(s)	257, 298, 1121, 2026, 2603, 2654, 2764, 2821
LweI	GCATC	5 cut(s)	57, 1489, 1883, 2159, 2855
MabI	ACCWGGT	1 cut(s)	2359
MaeI	CTAG	6 cut(s)	1188, 1229, 1832, 2033, 2069, 2802
MaeII	ACGT	4 cut(s)	89, 231, 401, 1738
MaeIII	GTNAC	6 cut(s)	36, 511, 1480, 2416, 2423, 2750
MalI	GATC	8 cut(s)	1144, 1377, 1644, 1793, 1892, 2349, 2567, 2636
MboI	GATC	8 cut(s)	1142, 1375, 1642, 1791, 1890, 2347, 2565, 2634
MboII	GAAGA	9 cut(s)	491, 853, 1746, 1772, 2120, 2126, 2674, 2687, 2896
MfeI	CAATTG	2 cut(s)	2428, 2610
MflI	RGATCY	2 cut(s)	1142, 1791
MhlI	GDGCHC	4 cut(s)	460, 1576, 2064, 2368
MlsI	TGGCCA	2 cut(s)	2131, 2228
MluNI	TGGCCA	2 cut(s)	2131, 2228
MlyI	GAGTC	4 cut(s)	776, 1610, 1951, 2567
MmeI	TCCRAC	5 cut(s)	130, 604, 924, 2581, 2889
Mox20I	TGGCCA	2 cut(s)	2131, 2228
Mph1103I	ATGCAT	1 cut(s)	1909
MroXI	GAANNNNTTC	1 cut(s)	663
MscI	TGGCCA	2 cut(s)	2131, 2228
MslI	CAYNNNNRTG	2 cut(s)	1007, 1446
Msp20I	TGGCCA	2 cut(s)	2131, 2228
MspA1I	CMGCKG	2 cut(s)	270, 2645
MspI	CCGG	9 cut(s)	42, 174, 206, 549, 806, 1357, 2160, 2579, 2704
MunI	CAATTG	2 cut(s)	2428, 2610
MvaI	CCWGG	7 cut(s)	115, 669, 927, 1395, 1705, 2128, 2361
MvnI	CGCG	1 cut(s)	782
NciI	CCSGG	7 cut(s)	42, 43, 175, 206, 207, 806, 2704
NcoI	CCATGG	3 cut(s)	906, 1063, 2819
NdeII	GATC	8 cut(s)	1142, 1375, 1642, 1791, 1890, 2347, 2565, 2634
NlaIV	GGNNCC	5 cut(s)	203, 778, 1287, 1399, 2786
NmuCI	GTSAC	2 cut(s)	1480, 2423
NsbI	TGCGCA	1 cut(s)	1920
NsiI	ATGCAT	1 cut(s)	1909
NspI	RCATGY	3 cut(s)	37, 162, 1907
NspV	TTCGAA	2 cut(s)	555, 2185
OliI	CACNNNNGTG	1 cut(s)	1007
PaeR7I	CTCGAG	1 cut(s)	2367
PceI	AGGCCT	2 cut(s)	134, 1830
PciI	ACATGT	1 cut(s)	158
PciSI	GCTCTTC	2 cut(s)	1785, 2657
PcsI	WCGNNNNNNNCGW	1 cut(s)	762
PdmI	GAANNNNTTC	1 cut(s)	663
PfeI	GAWTC	6 cut(s)	422, 490, 552, 982, 2242, 2766
PflFI	GACNNNGTC	1 cut(s)	1437
PfoI	TCCNGGA	2 cut(s)	925, 2702
Ple19I	CGATCG	1 cut(s)	2637
PleI	GAGTC	4 cut(s)	775, 1609, 1951, 2567
PpsI	GAGTC	4 cut(s)	775, 1609, 1951, 2567
PpuMI	RGGWCCY	1 cut(s)	2785
PscI	ACATGT	1 cut(s)	158
PsiI	TTATAA	2 cut(s)	723, 2684
Psp124BI	GAGCTC	1 cut(s)	460
Psp5II	RGGWCCY	1 cut(s)	2785
Psp6I	CCWGG	7 cut(s)	113, 667, 925, 1393, 1703, 2126, 2359
PspFI	CCCAGC	2 cut(s)	266, 2496
PspGI	CCWGG	7 cut(s)	113, 667, 925, 1393, 1703, 2126, 2359
PspN4I	GGNNCC	5 cut(s)	203, 778, 1287, 1399, 2786
PspPI	GGNCC	4 cut(s)	44, 740, 777, 2785
PspPPI	RGGWCCY	1 cut(s)	2785
PstI	CTGCAG	1 cut(s)	2782
PstNI	CAGNNNCTG	2 cut(s)	985, 2834
PsuI	RGATCY	2 cut(s)	1142, 1791
PsyI	GACNNNGTC	1 cut(s)	1437
PvuI	CGATCG	1 cut(s)	2637
PvuII	CAGCTG	2 cut(s)	270, 2645
RsaI	GTAC	5 cut(s)	883, 1171, 1629, 1861, 2437
RsaNI	GTAC	5 cut(s)	882, 1170, 1628, 1860, 2436
RseI	CAYNNNNRTG	2 cut(s)	1007, 1446
SacI	GAGCTC	1 cut(s)	460
SapI	GCTCTTC	2 cut(s)	1785, 2657
Sau3AI	GATC	8 cut(s)	1142, 1375, 1642, 1791, 1890, 2347, 2565, 2634
Sau96I	GGNCC	4 cut(s)	44, 740, 777, 2785
SchI	GAGTC	4 cut(s)	776, 1610, 1951, 2567
SduI	GDGCHC	4 cut(s)	460, 1576, 2064, 2368
SexAI	ACCWGGT	1 cut(s)	2359
SfaNI	GCATC	5 cut(s)	57, 1489, 1883, 2159, 2855
SfcI	CTRYAG	4 cut(s)	1842, 2202, 2310, 2778
Sfr274I	CTCGAG	1 cut(s)	2367
SfuI	TTCGAA	2 cut(s)	555, 2185
SinI	GGWCC	3 cut(s)	740, 777, 2785
SlaI	CTCGAG	1 cut(s)	2367
SmaI	CCCGGG	2 cut(s)	43, 207
SmiMI	CAYNNNNRTG	2 cut(s)	1007, 1446
SmlI	CTYRAG	3 cut(s)	2367, 2387, 2918
SmoI	CTYRAG	3 cut(s)	2367, 2387, 2918
SpeI	ACTAGT	2 cut(s)	1187, 2032
SseBI	AGGCCT	2 cut(s)	134, 1830
SsiI	CCGC	6 cut(s)	191, 199, 222, 780, 1899, 2843
SspMI	CTAG	6 cut(s)	1188, 1229, 1832, 2033, 2069, 2802
SstI	GAGCTC	1 cut(s)	460
StuI	AGGCCT	2 cut(s)	134, 1830
StyI	CCWWGG	6 cut(s)	906, 1063, 1095, 2164, 2454, 2819
TaaI	ACNGT	8 cut(s)	418, 630, 1519, 1966, 2057, 2203, 2476, 2545
TaiI	ACGT	4 cut(s)	92, 234, 404, 1741
TaqII	GACCGA	2 cut(s)	1114, 1786
TatI	WGTACW	2 cut(s)	881, 1627
TauI	GCSGC	3 cut(s)	202, 224, 2846
TfiI	GAWTC	6 cut(s)	422, 490, 552, 982, 2242, 2766
TscAI	CASTG	8 cut(s)	421, 1308, 1485, 1522, 1674, 1983, 2062, 2358
TseFI	GTSAC	2 cut(s)	1480, 2423
TseI	GCWGC	8 cut(s)	270, 311, 1109, 2039, 2591, 2642, 2777, 2834
Tsp45I	GTSAC	2 cut(s)	1480, 2423
TspGWI	ACGGA	1 cut(s)	2842
TspMI	CCCGGG	2 cut(s)	41, 205
TspRI	CASTG	8 cut(s)	421, 1308, 1485, 1522, 1674, 1983, 2062, 2358
Tth111I	GACNNNGTC	1 cut(s)	1437
VpaK11BI	GGWCC	3 cut(s)	740, 777, 2785
XagI	CCTNNNNNAGG	1 cut(s)	2800
XapI	RAATTY	3 cut(s)	857, 2021, 2119
XbaI	TCTAGA	1 cut(s)	1228
XceI	RCATGY	3 cut(s)	37, 162, 1907
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2080
XhoI	CTCGAG	1 cut(s)	2367
XmaI	CCCGGG	2 cut(s)	41, 205
XmiI	GTMKAC	2 cut(s)	1128, 1885
XmnI	GAANNNNTTC	1 cut(s)	663
XspI	CTAG	6 cut(s)	1188, 1229, 1832, 2033, 2069, 2802
Zsp2I	ATGCAT	1 cut(s)	1909

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.