Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002025

Physical Location & Seq

Genomic Coordinates Reverse (-)

15914683 .. 15920055

Gene Structure 5373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17727

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2982 bp

ATGGCGACCAAGTTCTTTGCTCTTGCGTGCATACGCAACAACAACAGTGTTGAAGGCCGCGGCAGCAGCGATTTGTCGCCGCGGCCTCACTACCCCTCCATGCCGAAGTATCCGAAGGGTGTGGTGGCCGAGGAGACCACTATGGTGGTGGGCACCGAGTCCAAGGCCGTGTTCTCCGTCATCGGCATGACCTGCTCCGCCTGCGCGGGATCGGTAGAGAAGGCTGTGAAGAGGCTACCCGGGATTCGCGAGGCGGTGGTCGACGTGCTCAACAACCGTGCCCAAGTCATGTTCTTCCCCAATTTCGTTAACGCAGAGACTATCCGTGAGACTATTGAAGATGTTGGATTTCAAGCAGCATTGATTGCTGATGAGGGAAACGAGAAGTCCACGTTGGTGTGCAGAATAAGGATCAAAGGAATGACTTGCACTTCTTGCTCTTCCACTGTTGAATCAGCTTTGCAGGCAGTTCATGGTGTACAAAAAGCCCAAGTTGCCTTAGCAACTGAAGAAGCAGATGTCCACTATGATCCAAAGATAGTGAGCTGCAATCGGCTGATGGTAGCCATTGAAGACACTGGATTCGAAGCCATACTTATTAATTCAGGTGAAGACATGAGCAAGATAGATCTTAAAGTTGACGGTGTAAGGACCGATCATTCAATGAGAATACTTGAACAGTCTCTTCAAGCACTCCCTGGGGTGCAAGGTGTAGACATACATCATGATGACAGAAAAATTTCCCTGTCTTACAAGCCAGATATGACAGGGCCCCGAAATTTCATCAATGTGATTGAAACAACTGGATCCAGGCGTTTCAGGGCAAAAATTTATCCAGGCGGTGGAGCAGGAAGAGAAAATCATAGGAAGGAGGAAATTCAGCAGTACTACAGAGTCTTTATCTGGAGTTTGATTTTCACCATTCCAGTATTTTTAACCTCCATGGTCTTCATGTACATCCCTGGACTTAAGCATGGCTTAGACAAGAAAGTAGTAAATATGCTCAGCATTGGGGAGCTAATAAGGTGGATTCTGTCTACTCCAGTGCAGTTCATTATAGGCCTGAGGTTCTATACTGGGGCATACAAGTCATTGCGCCATGGTTCTGCTAATATGGATGTGTTAATTGCCTTGGGAACAAATGCTGCATATTTCTATTCAGTCTACTCCGTACTGAGAGCTGCCACCTCCCCACATTTTAAGGGTACAGATTTCTTTGAGACTAGTGCAATGCTAATCTCATTCATTCTCTTAGGGAAGTACCTAGAGGTGTTAGCGAAGGGGAAGACATCTGATGCTATTGCCAAACTGATGGATTTGGCACCTGAAACAGCCACTTTGTTGACTCTAGACGAAGAAGGAAACATTTTAGGTGAAGAAGAAATTGATGGTCGGTTGATACAAAAGAACGATGTCATCAAAATTATTCCAGGGGCGAAGGTAGCTTCGGATGGTTATGTGATATGGGGACAAAGCCATGTAAATGAGAGTATGATAACAGGAGAAGCACGTCCAGTAGCAAAAAGGAAGGGTGATACAGTCATTGGAGGTACTGTAAATGAAAATGGTGTGTTGCATATCAAGGCAACACGGGTTGGATCAGAAAGTTCCCTCGCGCAGATTGTACGGCTTGTTGAGTCAGCTCAGATGGCCAAAGCTCCTGTTCAGAAGTTTGCTGACCGCATTTCTAAATTCTTTGTGCCACTGGTGATCATGCTTTCATTCTTTACCTGGCTTTCATGGTTTTTGGCTGGAAAATTCCACGGCTACCCGAAATCTTGGATACCGAAGTCCATGGATAGCTTTCAGCTTGCTCTCCAGTTTGGAATCTCTGTCATGGTTATTGCGTGCCCTTGTGCTCTAGGCCTAGCAACTCCTACTGCTGTCATGGTTGGTACTGGAGTTGGTGCCTCCCAAGGTGTATTGATCAAAGGAGGTCAAGCATTAGAAAGTGCACATAAGGTGGACTGCATTGTGTTCGACAAGACAGGGACTCTTACAATTGGGAAGCCACTGGTTGTTAACACACGACTCCTGAAAAATATGGTGCTTCGAGAATTCTATGAACTTGTTGCTGCAGCTGAGGTTAACAGTGAACACCCCTTGGCCAAGGCCATTGTTGAGTATGCCAAAAAATTCAGAGAAGATGAAGAGAATCCAGCGGGCCCAGAAGCGCATGACTTTGTCTCCATTACTGGTCACGGGGTGAAGGCTATTGTTCGGGGCAGGGAAATAATTGTGGGGAACAAGAGCTTGATGGTGGACCAGAACATTGCAGTTCCACTCGATGCAGAAGACTACCTAGCAGAAGCTGAAGGGCTGGCTCAAACTGGGATTCTAGTAGCCATAGATGGAGAAGTGGCCGGAGTTCTAGCAATATCTGATCCACTGAAACCAGGTGCTCAAGAAGTAATTACCATACTCAAGTCAATGAATGTTAGAAGCATAATGGTGACCGGTGACAATTGGGGAACTGCAAATTCTATTGCCAATGAAGTTGGTATTGATATTGTTATAGCCGAAGCGAAACCTGACCAGAAAGCAGAGAAAGTGAAGGAATTGCAGGCTTCAGGCTACACTGTGGCGATGGTGGGAGATGGCATCAATGACTCACCAGCACTTGTGGCGGCAGATGTAGGAATGGCAATTGGTGCTGGCACTGACATTGCAATTGAGGCAGCAGACGTTGTGCTAATGAAGAGTAACTTGGAGGATGTGATAACTGCCATTGATCTTTCAAGGAAAACCTTCACCCGTATTCGTTTGAACTACATTTGGGCTTTGGGATATAATGTGCTCGGGATCCCAATAGCTGCAGGAGTTCTCTTCCCATCCACTGGATTTCGCTTACCCCCTTGGATTGCTGGAGCTGCAATGGCTGCTTCTTCTGTCAGTGTTGTTTGCTGTTCATTGTTGTTGAAGAACTATAAGAGACCCAAGGAGCTGAATAACCTTGAGGTGCGTGGAATAGTGATCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0008150 GO:0008324 GO:0009636 GO:0010035 GO:0010038 GO:0010273 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046688 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061687 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0097501 GO:0098655 GO:0098660 GO:0098662 GO:0098754 GO:0099131 GO:0099132 GO:1990169

KEGG Pathways

Metabolic & Signaling

ko01524 ko04016 map01524 map04016

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

993

Amino Acids

107.41

Weight (kDa)

6.25

Isoelectric Point (pI)

28.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	57 - 117	2.1e-14	Heavy-metal-associated domain
HMA	PF00403	136 - 196	3.8e-13	Heavy-metal-associated domain
E1-E2_ATPase	PF00122	440 - 546	2.1e-23	P-type ATPase actuator domain
Hydrolase	PF00702	655 - 878	2.6e-34	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63440
fragaria_vesca	FvH4_5g02090 FvH4_5g02090 FvH4_5g02091 FvH4_5g02091 FvH4_5g02091 FvH4_5g02091
malus_domestica	MD06G1080800.v1.1 MD06G1080900.v1.1 MD14G1102600.v1.1
prunus_persica	Prupe.5G097900_v2.0.a1 Prupe.5G097900_v2.0.a1 Prupe.5G098000_v2.0.a1
pyrus_communis	pycom06g07780 pycom06g07790 pycom14g09890
rosa_chinensis	RchiOBHm_Chr7g0197781 RchiOBHm_Chr7g0198111 RchiOBHm_Chr7g0198141
rosa_laevigata	RLG00000003885 RLG00000003888 RLG00000019170
rosa_multiflora	Rmu_sc0000221.1_g000018 Rmu_sc0000221.1_g000030 Rmu_sc0006732.1_g000016
rosa_roxburghii	Rroxscaffold_3G00257940 Rroxscaffold_3G00257970 Rroxscaffold_3G00257990
rosa_rugosa	Rorug07G0045700 Rorug07G0045700 Rorug07G0045800 Rorug07G0045800 Rorug07G0045900
rosa_samantha	Rh7AG169100 Rh7AG169200 Rh7BG169900 Rh7BG172300 Rh7CG178600 Rh7CG178700 Rh7DG169200 Rh7DG171400 Rh7DG171800
rosa_wichuraiana	Rw7G014570 Rw7G014780 Rw7G014790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	200
AccB1I	GGYRCC	3 cut(s)	152, 1321, 1907
AccB7I	CCANNNNNTGG	2 cut(s)	842, 2837
AccI	GTMKAC	4 cut(s)	261, 714, 1037, 1164
AccII	CGCG	5 cut(s)	60, 82, 206, 249, 1616
AclWI	GGATC	9 cut(s)	217, 419, 524, 801, 814, 1606, 2378, 2797, 2810
AcoI	YGGCCR	4 cut(s)	126, 1650, 2106, 2361
AcsI	RAATTY	9 cut(s)	738, 778, 828, 876, 1691, 1757, 2057, 2135, 2479
AcuI	CTGAAG	3 cut(s)	528, 2334, 2553
AdeI	CACNNNGTG	1 cut(s)	2206
AfaI	GTAC	9 cut(s)	480, 887, 956, 1173, 1207, 1262, 1552, 1626, 1897
AfiI	CCNNNNNNNGG	2 cut(s)	842, 2837
AflII	CTTAAG	1 cut(s)	968
AgeI	ACCGGT	1 cut(s)	2456
AhlI	ACTAGT	1 cut(s)	1223
AjiI	CACGTC	2 cut(s)	265, 1511
AjnI	CCWGG	7 cut(s)	697, 809, 835, 961, 1429, 1730, 2395
AjuI	GAANNNNNNNTTGG	6 cut(s)	155, 187, 377, 409, 2690, 2722
AleI	CACNNNNGTG	2 cut(s)	143, 395
Alw21I	GWGCWC	5 cut(s)	270, 1861, 1957, 2404, 2799
Alw26I	GTCTC	7 cut(s)	128, 311, 323, 687, 1214, 2191, 2926
Alw44I	GTGCAC	1 cut(s)	1953
AlwI	GGATC	9 cut(s)	217, 419, 524, 801, 814, 1606, 2378, 2797, 2810
AlwNI	CAGNNNCTG	1 cut(s)	2312
Ama87I	CYCGRG	2 cut(s)	239, 2798
ApaI	GGGCCC	2 cut(s)	774, 2168
ApaLI	GTGCAC	1 cut(s)	1953
ApoI	RAATTY	9 cut(s)	738, 778, 828, 876, 1691, 1757, 2057, 2135, 2479
ArsI	GACNNNNNNTTYG	2 cut(s)	566, 598
AseI	ATTAAT	1 cut(s)	600
AsiGI	ACCGGT	1 cut(s)	2456
Asp700I	GAANNNNTTC	2 cut(s)	739, 2747
AspLEI	GCGC	4 cut(s)	206, 1098, 1618, 2176
AspS9I	GGNCC	6 cut(s)	651, 770, 771, 2164, 2165, 2263
AsuC2I	CCSGG	2 cut(s)	240, 241
AsuII	TTCGAA	1 cut(s)	585
AvaI	CYCGRG	2 cut(s)	239, 2798
AvaII	GGWCC	2 cut(s)	651, 2263
AxyI	CCTNAGG	1 cut(s)	1064
BaeGI	GKGCMC	6 cut(s)	155, 283, 774, 1853, 1957, 2168
BaeI	ACNNNNGTAYC	4 cut(s)	1775, 1808, 1887, 1920
BalI	TGGCCA	2 cut(s)	1652, 2108
BamHI	GGATCC	2 cut(s)	806, 2802
BanI	GGYRCC	3 cut(s)	152, 1321, 1907
BanII	GRGCYC	2 cut(s)	774, 2168
BbsI	GAAGAC	5 cut(s)	579, 618, 940, 1292, 2301
Bbv12I	GWGCWC	5 cut(s)	270, 1861, 1957, 2404, 2799
BbvCI	CCTCAGC	1 cut(s)	2082
BceAI	ACGGC	3 cut(s)	152, 1643, 1780
BcgI	CGANNNNNNTGC	2 cut(s)	1960, 1994
BciT130I	CCWGG	7 cut(s)	699, 811, 837, 963, 1431, 1732, 2397
BciVI	GTATCC	2 cut(s)	120, 1776
BclI	TGATCA	2 cut(s)	1710, 1926
BcnI	CCSGG	2 cut(s)	240, 241
BcoDI	GTCTC	7 cut(s)	128, 311, 323, 687, 1214, 2191, 2926
BcuI	ACTAGT	1 cut(s)	1223
BfaI	CTAG	8 cut(s)	1224, 1265, 1349, 1862, 1868, 2303, 2339, 2372
BfmI	CTRYAG	3 cut(s)	889, 2076, 2814
BfrI	CTTAAG	1 cut(s)	968
BfuAI	ACCTGC	1 cut(s)	200
BfuI	GTATCC	2 cut(s)	120, 1776
BglII	AGATCT	1 cut(s)	628
BlpI	GCTNAGC	1 cut(s)	1004
BmcAI	AGTACT	1 cut(s)	887
Bme1390I	CCNGG	9 cut(s)	240, 241, 699, 811, 837, 963, 1431, 1732, 2397
Bme18I	GGWCC	2 cut(s)	651, 2263
BmeT110I	CYCGRG	2 cut(s)	239, 2798
BmgBI	CACGTC	2 cut(s)	265, 1511
BmgT120I	GGNCC	6 cut(s)	651, 770, 771, 2164, 2165, 2263
BmiI	GGNNCC	8 cut(s)	154, 772, 773, 808, 1323, 1909, 2166, 2804
BmrFI	CCNGG	9 cut(s)	240, 241, 699, 811, 837, 963, 1431, 1732, 2397
BmrI	ACTGGG	2 cut(s)	1086, 2340
BmsI	GCATC	3 cut(s)	1285, 2278, 2610
BmuI	ACTGGG	2 cut(s)	1086, 2340
BpiI	GAAGAC	5 cut(s)	579, 618, 940, 1292, 2301
BpmI	CTGGAG	5 cut(s)	925, 1026, 1802, 1920, 2886
Bpu10I	CCTNAGC	2 cut(s)	499, 2082
Bpu1102I	GCTNAGC	1 cut(s)	1004
Bpu14I	TTCGAA	1 cut(s)	585
BpuEI	CTTGAG	3 cut(s)	2388, 2408, 2975
BpuMI	CCSGG	2 cut(s)	240, 241
BsaI	GGTCTC	2 cut(s)	128, 2926
BsaWI	WCCGGW	1 cut(s)	2456
BsaXI	ACNNNNNCTCC	6 cut(s)	80, 110, 1539, 1569, 2171, 2201
Bsc4I	CCNNNNNNNGG	2 cut(s)	842, 2837
Bse118I	RCCGGY	1 cut(s)	2456
Bse21I	CCTNAGG	1 cut(s)	1064
Bse3DI	GCAATG	5 cut(s)	1091, 1236, 2271, 2664, 2880
BseBI	CCWGG	7 cut(s)	699, 811, 837, 963, 1431, 1732, 2397
BseGI	GGATG	5 cut(s)	957, 1123, 1456, 2719, 2831
BseLI	CCNNNNNNNGG	2 cut(s)	842, 2837
BseMI	GCAATG	5 cut(s)	1091, 1236, 2271, 2664, 2880
BseMII	CTCAG	5 cut(s)	1018, 1055, 1166, 1658, 2073
BseRI	GAGGAG	1 cut(s)	146
BseSI	GKGCMC	6 cut(s)	155, 283, 774, 1853, 1957, 2168
BsgI	GTGCAG	2 cut(s)	421, 1067
Bsh1236I	CGCG	5 cut(s)	60, 82, 206, 249, 1616
BshNI	GGYRCC	3 cut(s)	152, 1321, 1907
BshTI	ACCGGT	1 cut(s)	2456
BsiHKAI	GWGCWC	5 cut(s)	270, 1861, 1957, 2404, 2799
BsiHKCI	CYCGRG	2 cut(s)	239, 2798
BsiSI	CCGG	3 cut(s)	240, 2364, 2457
BslFI	GGGAC	2 cut(s)	1482, 2005
BslI	CCNNNNNNNGG	2 cut(s)	842, 2837
BsmAI	GTCTC	7 cut(s)	128, 311, 323, 687, 1214, 2191, 2926
BsmFI	GGGAC	2 cut(s)	1482, 2005
Bso31I	GGTCTC	2 cut(s)	128, 2926
BsoBI	CYCGRG	2 cut(s)	239, 2798
Bsp119I	TTCGAA	1 cut(s)	585
Bsp120I	GGGCCC	2 cut(s)	770, 2164
Bsp1407I	TGTACA	2 cut(s)	478, 954
Bsp1720I	GCTNAGC	1 cut(s)	1004
Bsp19I	CCATGG	3 cut(s)	942, 1099, 1794
Bsp68I	TCGCGA	1 cut(s)	249
BspCNI	CTCAG	5 cut(s)	1017, 1056, 1167, 1657, 2074
BspFNI	CGCG	5 cut(s)	60, 82, 206, 249, 1616
BspHI	TCATGA	1 cut(s)	724
BspLI	GGNNCC	8 cut(s)	154, 772, 773, 808, 1323, 1909, 2166, 2804
BspMAI	CTGCAG	2 cut(s)	2080, 2818
BspMI	ACCTGC	1 cut(s)	200
BspPI	GGATC	9 cut(s)	217, 419, 524, 801, 814, 1606, 2378, 2797, 2810
BspQI	GCTCTTC	1 cut(s)	445
BspT104I	TTCGAA	1 cut(s)	585
BspT107I	GGYRCC	3 cut(s)	152, 1321, 1907
BspTI	CTTAAG	1 cut(s)	968
BspTNI	GGTCTC	2 cut(s)	128, 2926
BsrDI	GCAATG	5 cut(s)	1091, 1236, 2271, 2664, 2880
BsrFI	RCCGGY	1 cut(s)	2456
BsrGI	TGTACA	2 cut(s)	478, 954
BssAI	RCCGGY	1 cut(s)	2456
Bst2UI	CCWGG	7 cut(s)	699, 811, 837, 963, 1431, 1732, 2397
Bst4CI	ACNGT	9 cut(s)	47, 278, 448, 644, 681, 1540, 1555, 2093, 2581
Bst6I	CTCTTC	7 cut(s)	224, 445, 690, 847, 2145, 2693, 2831
BstAFI	CTTAAG	1 cut(s)	968
BstAPI	GCANNNNNTGC	5 cut(s)	192, 365, 435, 2651, 2879
BstAUI	TGTACA	2 cut(s)	478, 954
BstBI	TTCGAA	1 cut(s)	585
BstC8I	GCNNGC	9 cut(s)	28, 202, 465, 1812, 1849, 2164, 2322, 2565, 2656
BstDEI	CTNAG	8 cut(s)	499, 979, 1004, 1064, 1175, 1252, 1644, 2082
BstDSI	CCRYGG	6 cut(s)	58, 80, 942, 1099, 1762, 1794
BstEII	GGTNACC	1 cut(s)	2452
BstF5I	GGATG	5 cut(s)	957, 1123, 1456, 2719, 2831
BstFNI	CGCG	5 cut(s)	60, 82, 206, 249, 1616
BstHHI	GCGC	4 cut(s)	206, 1098, 1618, 2176
BstMAI	GTCTC	7 cut(s)	128, 311, 323, 687, 1214, 2191, 2926
BstNI	CCWGG	7 cut(s)	699, 811, 837, 963, 1431, 1732, 2397
BstPI	GGTNACC	1 cut(s)	2452
BstSCI	CCNGG	9 cut(s)	238, 239, 697, 809, 835, 961, 1429, 1730, 2395
BstSFI	CTRYAG	3 cut(s)	889, 2076, 2814
BstSLI	GKGCMC	6 cut(s)	155, 283, 774, 1853, 1957, 2168
BstUI	CGCG	5 cut(s)	60, 82, 206, 249, 1616
BstV2I	GAAGAC	5 cut(s)	579, 618, 940, 1292, 2301
BstX2I	RGATCY	3 cut(s)	628, 806, 2802
BstXI	CCANNNNNNTGG	2 cut(s)	145, 1312
BstYI	RGATCY	3 cut(s)	628, 806, 2802
Bsu36I	CCTNAGG	1 cut(s)	1064
BsuI	GTATCC	2 cut(s)	120, 1776
BtgI	CCRYGG	6 cut(s)	58, 80, 942, 1099, 1762, 1794
BtgZI	GCGATG	1 cut(s)	2600
BtrI	CACGTC	2 cut(s)	265, 1511
BtsCI	GGATG	5 cut(s)	957, 1123, 1456, 2719, 2831
BtuMI	TCGCGA	1 cut(s)	249
BveI	ACCTGC	1 cut(s)	200
Cac8I	GCNNGC	9 cut(s)	28, 202, 465, 1812, 1849, 2164, 2322, 2565, 2656
CaiI	CAGNNNCTG	1 cut(s)	2312
CciI	TCATGA	1 cut(s)	724
CfoI	GCGC	4 cut(s)	206, 1098, 1618, 2176
Cfr10I	RCCGGY	1 cut(s)	2456
Cfr13I	GGNCC	6 cut(s)	651, 770, 771, 2164, 2165, 2263
Cfr42I	CCGCGG	2 cut(s)	61, 83
Cfr9I	CCCGGG	1 cut(s)	239
CsiI	ACCWGGT	1 cut(s)	2395
Csp6I	GTAC	9 cut(s)	479, 886, 955, 1172, 1206, 1261, 1551, 1625, 1896
CspAI	ACCGGT	1 cut(s)	2456
CviQI	GTAC	9 cut(s)	479, 886, 955, 1172, 1206, 1261, 1551, 1625, 1896
DdeI	CTNAG	8 cut(s)	499, 979, 1004, 1064, 1175, 1252, 1644, 2082
DraIII	CACNNNGTG	1 cut(s)	2206
EaeI	YGGCCR	4 cut(s)	126, 1650, 2106, 2361
Eam1104I	CTCTTC	7 cut(s)	224, 445, 690, 847, 2145, 2693, 2831
EarI	CTCTTC	7 cut(s)	224, 445, 690, 847, 2145, 2693, 2831
EciI	GGCGGA	1 cut(s)	187
Eco147I	AGGCCT	2 cut(s)	1062, 1866
Eco24I	GRGCYC	2 cut(s)	774, 2168
Eco31I	GGTCTC	2 cut(s)	128, 2926
Eco47I	GGWCC	2 cut(s)	651, 2263
Eco57I	CTGAAG	3 cut(s)	528, 2334, 2553
Eco81I	CCTNAGG	1 cut(s)	1064
Eco88I	CYCGRG	2 cut(s)	239, 2798
Eco91I	GGTNACC	1 cut(s)	2452
EcoO109I	RGGNCCY	2 cut(s)	770, 771
EcoO65I	GGTNACC	1 cut(s)	2452
EcoRI	GAATTC	1 cut(s)	2057
EcoRII	CCWGG	7 cut(s)	697, 809, 835, 961, 1429, 1730, 2395
EcoT38I	GRGCYC	2 cut(s)	774, 2168
FalI	AAGNNNNNCTT	6 cut(s)	579, 611, 962, 994, 2690, 2722
FaqI	GGGAC	2 cut(s)	1482, 2005
FauI	CCCGC	2 cut(s)	199, 2155
FbaI	TGATCA	2 cut(s)	1710, 1926
FblI	GTMKAC	4 cut(s)	261, 714, 1037, 1164
FokI	GGATG	5 cut(s)	944, 1130, 1463, 2726, 2818
FriOI	GRGCYC	2 cut(s)	774, 2168
FspBI	CTAG	8 cut(s)	1224, 1265, 1349, 1862, 1868, 2303, 2339, 2372
GlaI	GCGC	4 cut(s)	205, 1097, 1617, 2175
GsuI	CTGGAG	5 cut(s)	925, 1026, 1802, 1920, 2886
HapII	CCGG	3 cut(s)	240, 2364, 2457
HhaI	GCGC	4 cut(s)	206, 1098, 1618, 2176
Hin6I	GCGC	4 cut(s)	204, 1096, 1616, 2174
HinP1I	GCGC	4 cut(s)	204, 1096, 1616, 2174
HincII	GTYRAC	6 cut(s)	262, 310, 640, 1344, 2023, 2089
HindII	GTYRAC	6 cut(s)	262, 310, 640, 1344, 2023, 2089
HpaI	GTTAAC	3 cut(s)	310, 2023, 2089
HpaII	CCGG	3 cut(s)	240, 2364, 2457
Hpy188I	TCNGA	8 cut(s)	114, 1294, 1450, 1603, 1647, 1668, 2141, 2383
Hpy188III	TCNNGA	8 cut(s)	248, 725, 904, 1349, 2035, 2054, 2405, 2800
Hpy99I	CGWCG	1 cut(s)	266
HpyCH4III	ACNGT	9 cut(s)	47, 278, 448, 644, 681, 1540, 1555, 2093, 2581
HpyCH4IV	ACGT	4 cut(s)	264, 392, 1510, 2685
HpyF3I	CTNAG	8 cut(s)	499, 979, 1004, 1064, 1175, 1252, 1644, 2082
HpySE526I	ACGT	4 cut(s)	264, 392, 1510, 2685
HspAI	GCGC	4 cut(s)	204, 1096, 1616, 2174
Ksp22I	TGATCA	2 cut(s)	1710, 1926
KspAI	GTTAAC	3 cut(s)	310, 2023, 2089
KspI	CCGCGG	2 cut(s)	61, 83
LguI	GCTCTTC	1 cut(s)	445
LmnI	GCTCC	6 cut(s)	200, 845, 1015, 1663, 2867, 2941
LweI	GCATC	3 cut(s)	1285, 2278, 2610
MabI	ACCWGGT	1 cut(s)	2395
MaeI	CTAG	8 cut(s)	1224, 1265, 1349, 1862, 1868, 2303, 2339, 2372
MaeII	ACGT	4 cut(s)	264, 392, 1510, 2685
MaeIII	GTNAC	4 cut(s)	2198, 2452, 2459, 2702
MfeI	CAATTG	4 cut(s)	2001, 2464, 2646, 2670
MflI	RGATCY	3 cut(s)	628, 806, 2802
MlsI	TGGCCA	2 cut(s)	1652, 2108
MluNI	TGGCCA	2 cut(s)	1652, 2108
MlyI	GAGTC	7 cut(s)	167, 903, 1339, 1646, 1987, 2025, 2603
MmeI	TCCRAC	2 cut(s)	325, 1576
Mox20I	TGGCCA	2 cut(s)	1652, 2108
MroXI	GAANNNNTTC	2 cut(s)	739, 2747
MscI	TGGCCA	2 cut(s)	1652, 2108
MseI	TTAA	9 cut(s)	309, 600, 633, 935, 969, 1124, 1200, 2022, 2088
MslI	CAYNNNNRTG	7 cut(s)	143, 185, 395, 726, 788, 1482, 2450
Msp20I	TGGCCA	2 cut(s)	1652, 2108
MspA1I	CMGCKG	4 cut(s)	60, 82, 2081, 2162
MspCI	CTTAAG	1 cut(s)	968
MspI	CCGG	3 cut(s)	240, 2364, 2457
MspR9I	CCNGG	9 cut(s)	240, 241, 699, 811, 837, 963, 1431, 1732, 2397
MunI	CAATTG	4 cut(s)	2001, 2464, 2646, 2670
MvaI	CCWGG	7 cut(s)	699, 811, 837, 963, 1431, 1732, 2397
MvnI	CGCG	5 cut(s)	60, 82, 206, 249, 1616
NciI	CCSGG	2 cut(s)	240, 241
NcoI	CCATGG	3 cut(s)	942, 1099, 1794
NlaIV	GGNNCC	8 cut(s)	154, 772, 773, 808, 1323, 1909, 2166, 2804
NmeAIII	GCCGAG	1 cut(s)	154
NmuCI	GTSAC	3 cut(s)	2198, 2452, 2459
NruI	TCGCGA	1 cut(s)	249
NspV	TTCGAA	1 cut(s)	585
OliI	CACNNNNGTG	2 cut(s)	143, 395
PagI	TCATGA	1 cut(s)	724
PasI	CCCWGGG	1 cut(s)	698
PceI	AGGCCT	2 cut(s)	1062, 1866
PciSI	GCTCTTC	1 cut(s)	445
PdmI	GAANNNNTTC	2 cut(s)	739, 2747
PfeI	GAWTC	7 cut(s)	244, 452, 582, 1030, 1827, 2155, 2335
PflFI	GACNNNGTC	1 cut(s)	2183
PflMI	CCANNNNNTGG	2 cut(s)	842, 2837
PinAI	ACCGGT	1 cut(s)	2456
PleI	GAGTC	7 cut(s)	166, 902, 1339, 1645, 1987, 2025, 2603
PpsI	GAGTC	7 cut(s)	166, 902, 1339, 1645, 1987, 2025, 2603
PshBI	ATTAAT	1 cut(s)	600
Psp6I	CCWGG	7 cut(s)	697, 809, 835, 961, 1429, 1730, 2395
PspEI	GGTNACC	1 cut(s)	2452
PspGI	CCWGG	7 cut(s)	697, 809, 835, 961, 1429, 1730, 2395
PspN4I	GGNNCC	8 cut(s)	154, 772, 773, 808, 1323, 1909, 2166, 2804
PspOMI	GGGCCC	2 cut(s)	770, 2164
PspPI	GGNCC	6 cut(s)	651, 770, 771, 2164, 2165, 2263
PstI	CTGCAG	2 cut(s)	2080, 2818
PstNI	CAGNNNCTG	1 cut(s)	2312
PsuI	RGATCY	3 cut(s)	628, 806, 2802
PsyI	GACNNNGTC	1 cut(s)	2183
PvuII	CAGCTG	1 cut(s)	2081
RruI	TCGCGA	1 cut(s)	249
RsaI	GTAC	9 cut(s)	480, 887, 956, 1173, 1207, 1262, 1552, 1626, 1897
RsaNI	GTAC	9 cut(s)	479, 886, 955, 1172, 1206, 1261, 1551, 1625, 1896
RseI	CAYNNNNRTG	7 cut(s)	143, 185, 395, 726, 788, 1482, 2450
SacII	CCGCGG	2 cut(s)	61, 83
SalI	GTCGAC	1 cut(s)	260
SapI	GCTCTTC	1 cut(s)	445
SaqAI	TTAA	9 cut(s)	309, 600, 633, 935, 969, 1124, 1200, 2022, 2088
Sau96I	GGNCC	6 cut(s)	651, 770, 771, 2164, 2165, 2263
ScaI	AGTACT	1 cut(s)	887
SchI	GAGTC	7 cut(s)	167, 903, 1339, 1646, 1987, 2025, 2603
ScrFI	CCNGG	9 cut(s)	240, 241, 699, 811, 837, 963, 1431, 1732, 2397
SexAI	ACCWGGT	1 cut(s)	2395
SfaNI	GCATC	3 cut(s)	1285, 2278, 2610
SfcI	CTRYAG	3 cut(s)	889, 2076, 2814
Sfr303I	CCGCGG	2 cut(s)	61, 83
SfuI	TTCGAA	1 cut(s)	585
SgrBI	CCGCGG	2 cut(s)	61, 83
SinI	GGWCC	2 cut(s)	651, 2263
SmaI	CCCGGG	1 cut(s)	241
SmiMI	CAYNNNNRTG	7 cut(s)	143, 185, 395, 726, 788, 1482, 2450
SmlI	CTYRAG	4 cut(s)	968, 2403, 2423, 2954
SmoI	CTYRAG	4 cut(s)	968, 2403, 2423, 2954
SpeI	ACTAGT	1 cut(s)	1223
SseBI	AGGCCT	2 cut(s)	1062, 1866
SspMI	CTAG	8 cut(s)	1224, 1265, 1349, 1862, 1868, 2303, 2339, 2372
StuI	AGGCCT	2 cut(s)	1062, 1866
StyD4I	CCNGG	9 cut(s)	238, 239, 697, 809, 835, 961, 1429, 1730, 2395
TaaI	ACNGT	9 cut(s)	47, 278, 448, 644, 681, 1540, 1555, 2093, 2581
TaiI	ACGT	4 cut(s)	267, 395, 1513, 2688
TaqI	TCGA	6 cut(s)	261, 585, 1980, 2053, 2286, 2976
TaqII	GACCGA	1 cut(s)	668
TatI	WGTACW	3 cut(s)	478, 885, 954
TauI	GCSGC	5 cut(s)	60, 63, 82, 85, 2630
TfiI	GAWTC	7 cut(s)	244, 452, 582, 1030, 1827, 2155, 2335
Tru1I	TTAA	9 cut(s)	309, 600, 633, 935, 969, 1124, 1200, 2022, 2088
Tru9I	TTAA	9 cut(s)	309, 600, 633, 935, 969, 1124, 1200, 2022, 2088
TseFI	GTSAC	3 cut(s)	2198, 2452, 2459
Tsp45I	GTSAC	3 cut(s)	2198, 2452, 2459
TspGWI	ACGGA	3 cut(s)	166, 314, 1159
TspMI	CCCGGG	1 cut(s)	239
Tth111I	GACNNNGTC	1 cut(s)	2183
Van91I	CCANNNNNTGG	2 cut(s)	842, 2837
Vha464I	CTTAAG	1 cut(s)	968
VneI	GTGCAC	1 cut(s)	1953
VpaK11BI	GGWCC	2 cut(s)	651, 2263
VspI	ATTAAT	1 cut(s)	600
XapI	RAATTY	9 cut(s)	738, 778, 828, 876, 1691, 1757, 2057, 2135, 2479
XbaI	TCTAGA	1 cut(s)	1348
XcmI	CCANNNNNNNNNTGG	1 cut(s)	145
XmaI	CCCGGG	1 cut(s)	239
XmiI	GTMKAC	4 cut(s)	261, 714, 1037, 1164
XmnI	GAANNNNTTC	2 cut(s)	739, 2747
XspI	CTAG	8 cut(s)	1224, 1265, 1349, 1862, 1868, 2303, 2339, 2372
ZrmI	AGTACT	1 cut(s)	887

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.