Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000221.1

Orthogroup ID

OG0002025

Physical Location & Seq

Genomic Coordinates Forward (+)

84161 .. 89888

Gene Structure 5728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000221.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3144 bp

atggcgaccaagttctttgctcttgcgtgcatacgcaacaacaacagtggtgaaggccgcggcggcagcgatttgtctccgcggcctcactacccctccatgccgaagtatccgaagggtgtggtggccgaggagaccactatggtggtgggcaccgagtccaaggccgtgttctccgtcatcggcatgacctgctccgcctgcgcgggatcggtagagaaggctgtgaagaggctacccgggattcgcgaggcctgctgcgtttttcatttcatggcaaccaagttctttgctcttgcgtgcatacgcaacaacaacagtggtgaaggccgcggcggcagcgatttgtctccgcggcctcactacccctccatgccgaagtatccgaagggtgtggtggccgaggagaccactatggtggtgggcaccgagtccaaggccgtgttctccgtcatcggcatgacctgctccgcctgcgcgggatcggtagagaaggctgtgaagaggctacccgggattcgcgaggcggtggtcgacgtgctcaacaaccgtgatccagtcccatgtaacaaacatagccttactttactctttctttgcaagactatccgtgagactattgaagatgttggatttcaagcaacattgattgctgatgagggaaacgagaagcccacgttggtgtgcagaataaggatcaaaggaatgacttgcacttcttgctcttccactgttgaatcagctttgcaggcagttcatggtgtacaaaaagcccaagttgccttagcaactgaagaagcagatgtccactatgatccaaagatagtgagctgcaatcagctgatggtagccattgaagacactggattcgaagccatacttattaattcaggtgaagacatgagcaagatagatcttaaagttgacggtgtaaggaccgatcattcaatgagaatacttgaacagtctcttcaagcactccctggggtgcaaggtgtagacatacatcatgatgacagaaaaatttccctgtcttacaagccagatatgacagggccccgaaatttcatcaatgtgattgaaacaactggatccaggcgtttcagggcaaaaatttatccaggcggtggagcaggaagagaaaatcataggaaggaggaaattcagcagtactacagagtctttctctggagtttgattttcaccattccagtatttttaacctccatggtcttcatgtacatccctggacttaagcatggcttagacaagaaagtagtaaatatgctcagcattggggagcttataaggtggattctgtctactccagtgcagttcatcataggcctgaggttctatactggggcatacaagtcattgcgccatggttctgctaatatggatgtgttaattgccttgggaacaaatgctgcatatttctattcagtctactccgtactgagagctgccacctccccacattttaagggtacagatttctttgagactagtgcaatgctaatctcattcattctcttagggaagtacctagaggtgttagctaaggggaagacatctgatgctattgccaaactgatggatttggcacctgaaacagccactttgttgactctagacgaagaaagaaacattttaggtgaagaagaaattgatggtcggttgatacaaaagaacgatgtcatcaaaattattccaggggcgaaggtatcttcagatggttatgtgatatggggacaaagccatataaatgagagtatgataacaggagaagcacgtccagtagcaaaaaggaagggtgatacagtcattggaggtactgtaaatgaaaatggtgtgttgcatatcaaggcaacacgggttggatcagaaagttccctcgcacagattgtacggcttgttgagtcagctcagatggccaaagctcctgttcagaagtttgctgaccgcatttctaaattctttgtgccactggtgatcatgctttcattctttacctggctttcatggtttttggctggaaaattccacggctacccgaaatcttggataccgaagtccatggatagctttcagcttgctctccagtttgggatctctgtcatggttattgcgtgcccttgtgctctaggcctagcaactcctactgctgtcatggttggtactggagttggtgcctcccaaggtgtattgatcaaaggaggtcaagcattagaaagtgcacataaggtggactgcattgtgttcgacaagacagggactcttacaattgggaagccactggttgttaacacacgactcctgaaaaatatggtgcttcgagatttctatgaacttgttgctgcagctgaggttaacagtgaacaccccttggccaaggccattgttgagtatgccaaaaaatttagagaagatgaagagaatccagccggcccagaagcgcatgactttgtctccattactggtcacggggtgaaggctattgttcggggcagggaaataattgtggggaacaagagcttgatggtggaccagaacattgcagttccactcgatgcagaagactacctagcagaagctgaagggctggctcaaactgggattctagtagccatagatggagaagtggccggagttctagcaatatctgatccactgaaaccagcgaaacctgatcaccagaaagcagagaaagtgaaggaattgcaggcttcaggctacactgtggcgacggtgggagatggcatcaatgactcaccagcacttgtggcagcagatgtaggaatggcaattggtgctggcactgacattgcaattgaggcagcagacattgtgctaatgaagagtaacttggaggatgtgataactgccattgatctttcaaggaaaaccttcacccgtattcgtttgaactacatttgggctttgggatataatgtgctcgggatcccaatagctgcaggagttctcttcccatccactggatttcgtttacccccttggattgctggagctgcaatggctgcttcttctgtcagtgttgtttgctgttcattgttgttgaagaactataagagacccaaggagctgaataaccttgaggtgcgtggaatagtgatcgagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0008150 GO:0008324 GO:0009636 GO:0010035 GO:0010038 GO:0010273 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046688 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0061687 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0097501 GO:0098655 GO:0098660 GO:0098662 GO:0098754 GO:0099131 GO:0099132 GO:1990169

KEGG Pathways

Metabolic & Signaling

ko01524 ko04016 map01524 map04016

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

1047

Amino Acids

113.26

Weight (kDa)

7.76

Isoelectric Point (pI)

33.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63440
fragaria_vesca	FvH4_5g02090 FvH4_5g02090 FvH4_5g02091 FvH4_5g02091 FvH4_5g02091 FvH4_5g02091
malus_domestica	MD06G1080800.v1.1 MD06G1080900.v1.1 MD14G1102600.v1.1
prunus_persica	Prupe.5G097900_v2.0.a1 Prupe.5G097900_v2.0.a1 Prupe.5G098000_v2.0.a1
pyrus_communis	pycom06g07780 pycom06g07790 pycom14g09890
rosa_chinensis	RchiOBHm_Chr7g0197781 RchiOBHm_Chr7g0198111 RchiOBHm_Chr7g0198141
rosa_laevigata	RLG00000003885 RLG00000003888 RLG00000019170
rosa_multiflora	Rmu_sc0000221.1_g000018 Rmu_sc0000221.1_g000030 Rmu_sc0006732.1_g000016
rosa_roxburghii	Rroxscaffold_3G00257940 Rroxscaffold_3G00257970 Rroxscaffold_3G00257990
rosa_rugosa	Rorug07G0045700 Rorug07G0045700 Rorug07G0045800 Rorug07G0045800 Rorug07G0045900
rosa_samantha	Rh7AG169100 Rh7AG169200 Rh7BG169900 Rh7BG172300 Rh7CG178600 Rh7CG178700 Rh7DG169200 Rh7DG171400 Rh7DG171800
rosa_wichuraiana	Rw7G014570 Rw7G014780 Rw7G014790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1307
Acc36I	ACCTGC	2 cut(s)	200, 473
AccB1I	GGYRCC	4 cut(s)	152, 425, 1606, 2192
AccB7I	CCANNNNNTGG	2 cut(s)	1127, 2999
AccI	GTMKAC	4 cut(s)	534, 999, 1322, 1449
AccII	CGCG	8 cut(s)	60, 82, 206, 249, 333, 355, 479, 522
AcoI	YGGCCR	5 cut(s)	126, 399, 1935, 2391, 2646
AcsI	RAATTY	7 cut(s)	1023, 1063, 1113, 1161, 1976, 2042, 2420
AcuI	CTGAAG	4 cut(s)	813, 1716, 2619, 2715
AdeI	CACNNNGTG	1 cut(s)	2491
AfaI	GTAC	9 cut(s)	765, 1172, 1241, 1458, 1492, 1547, 1837, 1911, 2182
AfiI	CCNNNNNNNGG	2 cut(s)	1127, 2999
AflII	CTTAAG	1 cut(s)	1253
AhlI	ACTAGT	1 cut(s)	1508
AjiI	CACGTC	2 cut(s)	538, 1796
AjnI	CCWGG	6 cut(s)	982, 1094, 1120, 1246, 1714, 2015
AjuI	GAANNNNNNNTTGG	8 cut(s)	155, 187, 428, 460, 662, 694, 2852, 2884
AleI	CACNNNNGTG	3 cut(s)	143, 416, 680
Alw21I	GWGCWC	4 cut(s)	543, 2146, 2242, 2961
Alw26I	GTCTC	9 cut(s)	81, 128, 354, 401, 608, 972, 1499, 2476, 3088
Alw44I	GTGCAC	1 cut(s)	2238
AlwNI	CAGNNNCTG	1 cut(s)	2597
Ama87I	CYCGRG	3 cut(s)	239, 512, 2960
ApaI	GGGCCC	1 cut(s)	1059
ApaLI	GTGCAC	1 cut(s)	2238
ApoI	RAATTY	7 cut(s)	1023, 1063, 1113, 1161, 1976, 2042, 2420
ArsI	GACNNNNNNTTYG	2 cut(s)	851, 883
AseI	ATTAAT	1 cut(s)	885
Asp700I	GAANNNNTTC	2 cut(s)	1024, 2909
AspLEI	GCGC	4 cut(s)	206, 479, 1383, 2461
AspS9I	GGNCC	5 cut(s)	936, 1055, 1056, 2450, 2548
AsuC2I	CCSGG	4 cut(s)	240, 241, 513, 514
AsuII	TTCGAA	1 cut(s)	870
AvaI	CYCGRG	3 cut(s)	239, 512, 2960
AvaII	GGWCC	2 cut(s)	936, 2548
AxyI	CCTNAGG	1 cut(s)	1349
BaeGI	GKGCMC	5 cut(s)	155, 428, 1059, 2138, 2242
BaeI	ACNNNNGTAYC	4 cut(s)	2060, 2093, 2172, 2205
BalI	TGGCCA	2 cut(s)	1937, 2393
BamHI	GGATCC	2 cut(s)	1091, 2964
BanI	GGYRCC	4 cut(s)	152, 425, 1606, 2192
BanII	GRGCYC	1 cut(s)	1059
BbsI	GAAGAC	5 cut(s)	864, 903, 1225, 1577, 2586
Bbv12I	GWGCWC	4 cut(s)	543, 2146, 2242, 2961
BbvCI	CCTCAGC	1 cut(s)	2367
BccI	CCATC	9 cut(s)	838, 1591, 1667, 1730, 1927, 2536, 2630, 2753, 3001
BceAI	ACGGC	4 cut(s)	152, 425, 1928, 2065
BcgI	CGANNNNNNTGC	2 cut(s)	2245, 2279
BciT130I	CCWGG	6 cut(s)	984, 1096, 1122, 1248, 1716, 2017
BciVI	GTATCC	3 cut(s)	120, 393, 2061
BclI	TGATCA	3 cut(s)	1995, 2211, 2692
BcnI	CCSGG	4 cut(s)	240, 241, 513, 514
BcoDI	GTCTC	9 cut(s)	81, 128, 354, 401, 608, 972, 1499, 2476, 3088
BcuI	ACTAGT	1 cut(s)	1508
BfaI	CTAG	8 cut(s)	1509, 1550, 1634, 2147, 2153, 2588, 2624, 2657
BfmI	CTRYAG	3 cut(s)	1174, 2361, 2976
BfrI	CTTAAG	1 cut(s)	1253
BfuAI	ACCTGC	2 cut(s)	200, 473
BfuI	GTATCC	3 cut(s)	120, 393, 2061
BglI	GCCNNNNNGGC	2 cut(s)	63, 336
BglII	AGATCT	1 cut(s)	913
BlpI	GCTNAGC	1 cut(s)	1289
BmcAI	AGTACT	1 cut(s)	1172
Bme18I	GGWCC	2 cut(s)	936, 2548
BmeT110I	CYCGRG	3 cut(s)	239, 512, 2960
BmgBI	CACGTC	2 cut(s)	538, 1796
BmgT120I	GGNCC	5 cut(s)	936, 1055, 1056, 2450, 2548
BmiI	GGNNCC	8 cut(s)	154, 427, 1057, 1058, 1093, 1608, 2194, 2966
BmrI	ACTGGG	2 cut(s)	1371, 2625
BmsI	GCATC	3 cut(s)	1570, 2563, 2772
BmuI	ACTGGG	2 cut(s)	1371, 2625
BpiI	GAAGAC	5 cut(s)	864, 903, 1225, 1577, 2586
BplI	GAGNNNNNCTC	2 cut(s)	1170, 1202
BpmI	CTGGAG	5 cut(s)	1210, 1311, 2087, 2205, 3048
Bpu10I	CCTNAGC	3 cut(s)	784, 1563, 2367
Bpu1102I	GCTNAGC	1 cut(s)	1289
Bpu14I	TTCGAA	1 cut(s)	870
BpuEI	CTTGAG	1 cut(s)	3137
BpuMI	CCSGG	4 cut(s)	240, 241, 513, 514
BsaI	GGTCTC	3 cut(s)	128, 401, 3088
BsaXI	ACNNNNNCTCC	8 cut(s)	80, 110, 353, 383, 1824, 1854, 2456, 2486
Bsc4I	CCNNNNNNNGG	2 cut(s)	1127, 2999
Bse118I	RCCGGY	1 cut(s)	2447
Bse21I	CCTNAGG	1 cut(s)	1349
Bse3DI	GCAATG	5 cut(s)	1376, 1521, 2556, 2826, 3042
BseBI	CCWGG	6 cut(s)	984, 1096, 1122, 1248, 1716, 2017
BseGI	GGATG	4 cut(s)	1242, 1408, 2881, 2993
BseLI	CCNNNNNNNGG	2 cut(s)	1127, 2999
BseMI	GCAATG	5 cut(s)	1376, 1521, 2556, 2826, 3042
BseMII	CTCAG	5 cut(s)	1303, 1340, 1451, 1943, 2358
BseRI	GAGGAG	2 cut(s)	146, 419
BseSI	GKGCMC	5 cut(s)	155, 428, 1059, 2138, 2242
BsgI	GTGCAG	2 cut(s)	706, 1352
Bsh1236I	CGCG	8 cut(s)	60, 82, 206, 249, 333, 355, 479, 522
BshNI	GGYRCC	4 cut(s)	152, 425, 1606, 2192
BsiHKAI	GWGCWC	4 cut(s)	543, 2146, 2242, 2961
BsiHKCI	CYCGRG	3 cut(s)	239, 512, 2960
BsiSI	CCGG	4 cut(s)	240, 513, 2448, 2649
BslFI	GGGAC	3 cut(s)	545, 1767, 2290
BslI	CCNNNNNNNGG	2 cut(s)	1127, 2999
BsmAI	GTCTC	9 cut(s)	81, 128, 354, 401, 608, 972, 1499, 2476, 3088
BsmFI	GGGAC	3 cut(s)	545, 1767, 2290
Bso31I	GGTCTC	3 cut(s)	128, 401, 3088
BsoBI	CYCGRG	3 cut(s)	239, 512, 2960
Bsp119I	TTCGAA	1 cut(s)	870
Bsp120I	GGGCCC	1 cut(s)	1055
Bsp1286I	GDGCHC	8 cut(s)	155, 428, 543, 1059, 2138, 2146, 2242, 2961
Bsp1407I	TGTACA	2 cut(s)	763, 1239
Bsp1720I	GCTNAGC	1 cut(s)	1289
Bsp19I	CCATGG	3 cut(s)	1227, 1384, 2079
Bsp68I	TCGCGA	2 cut(s)	249, 522
BspCNI	CTCAG	5 cut(s)	1302, 1341, 1452, 1942, 2359
BspFNI	CGCG	8 cut(s)	60, 82, 206, 249, 333, 355, 479, 522
BspHI	TCATGA	1 cut(s)	1009
BspLI	GGNNCC	8 cut(s)	154, 427, 1057, 1058, 1093, 1608, 2194, 2966
BspMAI	CTGCAG	2 cut(s)	2365, 2980
BspMI	ACCTGC	2 cut(s)	200, 473
BspQI	GCTCTTC	1 cut(s)	730
BspT104I	TTCGAA	1 cut(s)	870
BspT107I	GGYRCC	4 cut(s)	152, 425, 1606, 2192
BspTI	CTTAAG	1 cut(s)	1253
BspTNI	GGTCTC	3 cut(s)	128, 401, 3088
BsrDI	GCAATG	5 cut(s)	1376, 1521, 2556, 2826, 3042
BsrFI	RCCGGY	1 cut(s)	2447
BsrGI	TGTACA	2 cut(s)	763, 1239
BssAI	RCCGGY	1 cut(s)	2447
Bst2UI	CCWGG	6 cut(s)	984, 1096, 1122, 1248, 1716, 2017
Bst6I	CTCTTC	8 cut(s)	224, 497, 730, 975, 1132, 2430, 2855, 2993
BstAFI	CTTAAG	1 cut(s)	1253
BstAPI	GCANNNNNTGC	5 cut(s)	192, 465, 720, 2813, 3041
BstAUI	TGTACA	2 cut(s)	763, 1239
BstBI	TTCGAA	1 cut(s)	870
BstDEI	CTNAG	9 cut(s)	784, 1264, 1289, 1349, 1460, 1537, 1563, 1929, 2367
BstDSI	CCRYGG	8 cut(s)	58, 80, 331, 353, 1227, 1384, 2047, 2079
BstF5I	GGATG	4 cut(s)	1242, 1408, 2881, 2993
BstFNI	CGCG	8 cut(s)	60, 82, 206, 249, 333, 355, 479, 522
BstHHI	GCGC	4 cut(s)	206, 479, 1383, 2461
BstMAI	GTCTC	9 cut(s)	81, 128, 354, 401, 608, 972, 1499, 2476, 3088
BstNI	CCWGG	6 cut(s)	984, 1096, 1122, 1248, 1716, 2017
BstSFI	CTRYAG	3 cut(s)	1174, 2361, 2976
BstSLI	GKGCMC	5 cut(s)	155, 428, 1059, 2138, 2242
BstUI	CGCG	8 cut(s)	60, 82, 206, 249, 333, 355, 479, 522
BstV2I	GAAGAC	5 cut(s)	864, 903, 1225, 1577, 2586
BstX2I	RGATCY	4 cut(s)	913, 1091, 2112, 2964
BstXI	CCANNNNNNTGG	3 cut(s)	145, 418, 1597
BstYI	RGATCY	4 cut(s)	913, 1091, 2112, 2964
Bsu36I	CCTNAGG	1 cut(s)	1349
BsuI	GTATCC	3 cut(s)	120, 393, 2061
BtgI	CCRYGG	8 cut(s)	58, 80, 331, 353, 1227, 1384, 2047, 2079
BtrI	CACGTC	2 cut(s)	538, 1796
BtsCI	GGATG	4 cut(s)	1242, 1408, 2881, 2993
BtuMI	TCGCGA	2 cut(s)	249, 522
BveI	ACCTGC	2 cut(s)	200, 473
CaiI	CAGNNNCTG	1 cut(s)	2597
CciI	TCATGA	1 cut(s)	1009
CfoI	GCGC	4 cut(s)	206, 479, 1383, 2461
Cfr10I	RCCGGY	1 cut(s)	2447
Cfr13I	GGNCC	5 cut(s)	936, 1055, 1056, 2450, 2548
Cfr42I	CCGCGG	4 cut(s)	61, 83, 334, 356
Cfr9I	CCCGGG	2 cut(s)	239, 512
Csp6I	GTAC	9 cut(s)	764, 1171, 1240, 1457, 1491, 1546, 1836, 1910, 2181
CspCI	CAANNNNNGTGG	4 cut(s)	28, 63, 301, 336
CviQI	GTAC	9 cut(s)	764, 1171, 1240, 1457, 1491, 1546, 1836, 1910, 2181
DdeI	CTNAG	9 cut(s)	784, 1264, 1289, 1349, 1460, 1537, 1563, 1929, 2367
DraIII	CACNNNGTG	1 cut(s)	2491
EaeI	YGGCCR	5 cut(s)	126, 399, 1935, 2391, 2646
Eam1104I	CTCTTC	8 cut(s)	224, 497, 730, 975, 1132, 2430, 2855, 2993
EarI	CTCTTC	8 cut(s)	224, 497, 730, 975, 1132, 2430, 2855, 2993
EciI	GGCGGA	2 cut(s)	187, 460
Eco147I	AGGCCT	3 cut(s)	254, 1347, 2151
Eco24I	GRGCYC	1 cut(s)	1059
Eco31I	GGTCTC	3 cut(s)	128, 401, 3088
Eco47I	GGWCC	2 cut(s)	936, 2548
Eco57I	CTGAAG	4 cut(s)	813, 1716, 2619, 2715
Eco81I	CCTNAGG	1 cut(s)	1349
Eco88I	CYCGRG	3 cut(s)	239, 512, 2960
EcoO109I	RGGNCCY	2 cut(s)	1055, 1056
EcoRII	CCWGG	6 cut(s)	982, 1094, 1120, 1246, 1714, 2015
EcoT38I	GRGCYC	1 cut(s)	1059
FalI	AAGNNNNNCTT	6 cut(s)	864, 896, 1247, 1279, 2852, 2884
FaqI	GGGAC	3 cut(s)	545, 1767, 2290
FauI	CCCGC	2 cut(s)	199, 472
FbaI	TGATCA	3 cut(s)	1995, 2211, 2692
FblI	GTMKAC	4 cut(s)	534, 999, 1322, 1449
FokI	GGATG	4 cut(s)	1229, 1415, 2888, 2980
FriOI	GRGCYC	1 cut(s)	1059
FspBI	CTAG	8 cut(s)	1509, 1550, 1634, 2147, 2153, 2588, 2624, 2657
GlaI	GCGC	4 cut(s)	205, 478, 1382, 2460
GsuI	CTGGAG	5 cut(s)	1210, 1311, 2087, 2205, 3048
HapII	CCGG	4 cut(s)	240, 513, 2448, 2649
HhaI	GCGC	4 cut(s)	206, 479, 1383, 2461
Hin6I	GCGC	4 cut(s)	204, 477, 1381, 2459
HinP1I	GCGC	4 cut(s)	204, 477, 1381, 2459
HincII	GTYRAC	5 cut(s)	535, 925, 1629, 2308, 2374
HindII	GTYRAC	5 cut(s)	535, 925, 1629, 2308, 2374
HpaI	GTTAAC	2 cut(s)	2308, 2374
HpaII	CCGG	4 cut(s)	240, 513, 2448, 2649
Hpy188I	TCNGA	8 cut(s)	114, 387, 1579, 1735, 1888, 1932, 1953, 2668
Hpy188III	TCNNGA	8 cut(s)	248, 521, 1010, 1189, 1634, 2320, 2339, 2962
Hpy99I	CGWCG	2 cut(s)	539, 2752
HpyCH4IV	ACGT	3 cut(s)	537, 677, 1795
HpyF3I	CTNAG	9 cut(s)	784, 1264, 1289, 1349, 1460, 1537, 1563, 1929, 2367
HpySE526I	ACGT	3 cut(s)	537, 677, 1795
HspAI	GCGC	4 cut(s)	204, 477, 1381, 2459
KroI	GCCGGC	1 cut(s)	2447
KroNI	GCCGGC	1 cut(s)	2449
Ksp22I	TGATCA	3 cut(s)	1995, 2211, 2692
KspAI	GTTAAC	2 cut(s)	2308, 2374
KspI	CCGCGG	4 cut(s)	61, 83, 334, 356
LguI	GCTCTTC	1 cut(s)	730
LmnI	GCTCC	7 cut(s)	200, 473, 1130, 1300, 1948, 3029, 3103
LweI	GCATC	3 cut(s)	1570, 2563, 2772
MaeI	CTAG	8 cut(s)	1509, 1550, 1634, 2147, 2153, 2588, 2624, 2657
MaeII	ACGT	3 cut(s)	537, 677, 1795
MaeIII	GTNAC	3 cut(s)	566, 2483, 2864
MfeI	CAATTG	3 cut(s)	2286, 2808, 2832
MflI	RGATCY	4 cut(s)	913, 1091, 2112, 2964
MhlI	GDGCHC	8 cut(s)	155, 428, 543, 1059, 2138, 2146, 2242, 2961
MlsI	TGGCCA	2 cut(s)	1937, 2393
MluNI	TGGCCA	2 cut(s)	1937, 2393
MlyI	GAGTC	8 cut(s)	167, 440, 1188, 1624, 1931, 2272, 2310, 2765
MmeI	TCCRAC	2 cut(s)	610, 1861
Mox20I	TGGCCA	2 cut(s)	1937, 2393
MroNI	GCCGGC	1 cut(s)	2447
MroXI	GAANNNNTTC	2 cut(s)	1024, 2909
MscI	TGGCCA	2 cut(s)	1937, 2393
MseI	TTAA	8 cut(s)	885, 918, 1220, 1254, 1409, 1485, 2307, 2373
MslI	CAYNNNNRTG	8 cut(s)	143, 185, 416, 458, 680, 1011, 1073, 1767
Msp20I	TGGCCA	2 cut(s)	1937, 2393
MspA1I	CMGCKG	6 cut(s)	60, 82, 333, 355, 841, 2366
MspCI	CTTAAG	1 cut(s)	1253
MspI	CCGG	4 cut(s)	240, 513, 2448, 2649
MunI	CAATTG	3 cut(s)	2286, 2808, 2832
MvaI	CCWGG	6 cut(s)	984, 1096, 1122, 1248, 1716, 2017
MvnI	CGCG	8 cut(s)	60, 82, 206, 249, 333, 355, 479, 522
NaeI	GCCGGC	1 cut(s)	2449
NciI	CCSGG	4 cut(s)	240, 241, 513, 514
NcoI	CCATGG	3 cut(s)	1227, 1384, 2079
NgoMIV	GCCGGC	1 cut(s)	2447
NlaIV	GGNNCC	8 cut(s)	154, 427, 1057, 1058, 1093, 1608, 2194, 2966
NmeAIII	GCCGAG	2 cut(s)	154, 427
NmuCI	GTSAC	1 cut(s)	2483
NruI	TCGCGA	2 cut(s)	249, 522
NspV	TTCGAA	1 cut(s)	870
OliI	CACNNNNGTG	3 cut(s)	143, 416, 680
PagI	TCATGA	1 cut(s)	1009
PasI	CCCWGGG	1 cut(s)	983
PceI	AGGCCT	3 cut(s)	254, 1347, 2151
PciSI	GCTCTTC	1 cut(s)	730
PdiI	GCCGGC	1 cut(s)	2449
PdmI	GAANNNNTTC	2 cut(s)	1024, 2909
PfeI	GAWTC	7 cut(s)	244, 517, 737, 867, 1315, 2440, 2620
PflFI	GACNNNGTC	1 cut(s)	2468
PflMI	CCANNNNNTGG	2 cut(s)	1127, 2999
PleI	GAGTC	8 cut(s)	166, 439, 1187, 1624, 1930, 2272, 2310, 2765
PpsI	GAGTC	8 cut(s)	166, 439, 1187, 1624, 1930, 2272, 2310, 2765
PshBI	ATTAAT	1 cut(s)	885
PsiI	TTATAA	1 cut(s)	1307
Psp6I	CCWGG	6 cut(s)	982, 1094, 1120, 1246, 1714, 2015
PspGI	CCWGG	6 cut(s)	982, 1094, 1120, 1246, 1714, 2015
PspN4I	GGNNCC	8 cut(s)	154, 427, 1057, 1058, 1093, 1608, 2194, 2966
PspOMI	GGGCCC	1 cut(s)	1055
PspPI	GGNCC	5 cut(s)	936, 1055, 1056, 2450, 2548
PstI	CTGCAG	2 cut(s)	2365, 2980
PstNI	CAGNNNCTG	1 cut(s)	2597
PsuI	RGATCY	4 cut(s)	913, 1091, 2112, 2964
PsyI	GACNNNGTC	1 cut(s)	2468
PvuII	CAGCTG	2 cut(s)	841, 2366
RruI	TCGCGA	2 cut(s)	249, 522
RsaI	GTAC	9 cut(s)	765, 1172, 1241, 1458, 1492, 1547, 1837, 1911, 2182
RsaNI	GTAC	9 cut(s)	764, 1171, 1240, 1457, 1491, 1546, 1836, 1910, 2181
RseI	CAYNNNNRTG	8 cut(s)	143, 185, 416, 458, 680, 1011, 1073, 1767
SacII	CCGCGG	4 cut(s)	61, 83, 334, 356
SalI	GTCGAC	1 cut(s)	533
SapI	GCTCTTC	1 cut(s)	730
SaqAI	TTAA	8 cut(s)	885, 918, 1220, 1254, 1409, 1485, 2307, 2373
Sau96I	GGNCC	5 cut(s)	936, 1055, 1056, 2450, 2548
ScaI	AGTACT	1 cut(s)	1172
SchI	GAGTC	8 cut(s)	167, 440, 1188, 1624, 1931, 2272, 2310, 2765
SduI	GDGCHC	8 cut(s)	155, 428, 543, 1059, 2138, 2146, 2242, 2961
SfaNI	GCATC	3 cut(s)	1570, 2563, 2772
SfcI	CTRYAG	3 cut(s)	1174, 2361, 2976
Sfr303I	CCGCGG	4 cut(s)	61, 83, 334, 356
SfuI	TTCGAA	1 cut(s)	870
SgrBI	CCGCGG	4 cut(s)	61, 83, 334, 356
SinI	GGWCC	2 cut(s)	936, 2548
SmaI	CCCGGG	2 cut(s)	241, 514
SmiMI	CAYNNNNRTG	8 cut(s)	143, 185, 416, 458, 680, 1011, 1073, 1767
SmlI	CTYRAG	2 cut(s)	1253, 3116
SmoI	CTYRAG	2 cut(s)	1253, 3116
SpeI	ACTAGT	1 cut(s)	1508
SseBI	AGGCCT	3 cut(s)	254, 1347, 2151
SspMI	CTAG	8 cut(s)	1509, 1550, 1634, 2147, 2153, 2588, 2624, 2657
StuI	AGGCCT	3 cut(s)	254, 1347, 2151
TaiI	ACGT	3 cut(s)	540, 680, 1798
TaqI	TCGA	6 cut(s)	534, 870, 2265, 2338, 2571, 3138
TaqII	GACCGA	1 cut(s)	953
TatI	WGTACW	3 cut(s)	763, 1170, 1239
TauI	GCSGC	8 cut(s)	60, 63, 66, 85, 333, 336, 339, 358
TfiI	GAWTC	7 cut(s)	244, 517, 737, 867, 1315, 2440, 2620
Tru1I	TTAA	8 cut(s)	885, 918, 1220, 1254, 1409, 1485, 2307, 2373
Tru9I	TTAA	8 cut(s)	885, 918, 1220, 1254, 1409, 1485, 2307, 2373
TseFI	GTSAC	1 cut(s)	2483
Tsp45I	GTSAC	1 cut(s)	2483
TspGWI	ACGGA	4 cut(s)	166, 439, 599, 1444
TspMI	CCCGGG	2 cut(s)	239, 512
Tth111I	GACNNNGTC	1 cut(s)	2468
Van91I	CCANNNNNTGG	2 cut(s)	1127, 2999
Vha464I	CTTAAG	1 cut(s)	1253
VneI	GTGCAC	1 cut(s)	2238
VpaK11BI	GGWCC	2 cut(s)	936, 2548
VspI	ATTAAT	1 cut(s)	885
XapI	RAATTY	7 cut(s)	1023, 1063, 1113, 1161, 1976, 2042, 2420
XbaI	TCTAGA	1 cut(s)	1633
XcmI	CCANNNNNNNNNTGG	2 cut(s)	145, 418
XmaI	CCCGGG	2 cut(s)	239, 512
XmiI	GTMKAC	4 cut(s)	534, 999, 1322, 1449
XmnI	GAANNNNTTC	2 cut(s)	1024, 2909
XspI	CTAG	8 cut(s)	1509, 1550, 1634, 2147, 2153, 2588, 2624, 2657
ZrmI	AGTACT	1 cut(s)	1172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.