Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001734

Physical Location & Seq

Genomic Coordinates Reverse (-)

40473837 .. 40705989

Gene Structure 232153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002837

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGCTGCGAGAATCCTACTCTCAAGAACATCCCTCAAGAATTTCAATCACTTCCTTCAACCTTCTCTCCACAATTCCTCCTCCTCTCAATTCCTCAGAAGCCTCTGCTCTCTCGTTTCCCGACAATTCAATTCCCGCCATGCCAAGAACCCTCATCCTGGCTATTCCAGGAGCATGGTCTCTTCTTCAAGCTACAATCTTGACGAGAATCCGACATTGGGTCTCGATACCCGCGTTCCGGCGACCATTATCACCGGCTTTCTCGGCTCCGGAAAGGTGGGGTTTGGTTTCTCTGCTTCTCATTGTCTTTTTTCAATCTGGGTTTTGATCAATCATCTTGGTAAAATTCCAGAGTTAAATTCACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CobW_C cobW

Protein Analysis

123

Amino Acids

13.42

Weight (kDa)

10.29

Isoelectric Point (pI)

43.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001734)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15730 AT1G80480
fragaria_vesca	FvH4_5g23620 FvH4_6g29200 FvH4_6g29200 FvH4_6g29200 FvH4_6g29200
malus_domestica	MD17G1216800.v1.1
prunus_persica	Prupe.3G092800_v2.0.a1 Prupe.3G092800_v2.0.a1 Prupe.5G023800_v2.0.a1 Prupe.5G023800_v2.0.a1 Prupe.5G023800_v2.0.a1 Prupe.5G023800_v2.0.a1 Prupe.5G023800_v2.0.a1 Prupe.5G023800_v2.0.a1 Prupe.5G023800_v2.0.a1 Prupe.5G023800_v2.0.a1 Prupe.5G023800_v2.0.a1 Prupe.5G023800_v2.0.a1
pyrus_communis	pycom17g22150
rosa_chinensis	RchiOBHm_Chr2g0134411 RchiOBHm_Chr7g0212921
rosa_laevigata	RLG00000002837
rosa_multiflora	Rmu_sc0005464.1_g000002 Rmu_sc0005571.1_g000036 Rmu_sc0009973.1_g000004
rosa_roxburghii	Rroxscaffold_2G00110250 Rroxscaffold_3G00246420
rosa_rugosa	Rorug02G0316900 Rorug07G0138200
rosa_samantha	Rh1AG268000 Rh2AG369500 Rh2BG375400 Rh2CG353000 Rh2DG392500 Rh3AG026000 Rh3BG026700 Rh3CG025800 Rh3DG026600 Rh4AG321200 Rh6DG256600 Rh7AG269300 Rh7BG264900 Rh7CG288500 Rh7DG277500
rosa_wichuraiana	Rw2G030090 Rw7G023400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	234
AccIII	TCCGGA	1 cut(s)	269
AciI	CCGC	2 cut(s)	136, 232
AcsI	RAATTY	3 cut(s)	40, 345, 358
AfiI	CCNNNNNNNGG	3 cut(s)	158, 218, 238
AgsI	TTSAA	5 cut(s)	46, 59, 130, 189, 315
AhdI	GACNNNNNGTC	1 cut(s)	219
AjnI	CCWGG	2 cut(s)	157, 167
AjuI	GAANNNNNNNTTGG	2 cut(s)	200, 232
AluBI	AGCT	1 cut(s)	192
AluI	AGCT	1 cut(s)	192
Alw26I	GTCTC	2 cut(s)	184, 227
Aor13HI	TCCGGA	1 cut(s)	269
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	3 cut(s)	40, 345, 358
AsuHPI	GGTGA	1 cut(s)	244
BaeI	ACNNNNGTAYC	2 cut(s)	219, 252
BciT130I	CCWGG	2 cut(s)	159, 169
BclI	TGATCA	1 cut(s)	327
BcoDI	GTCTC	2 cut(s)	184, 227
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	2 cut(s)	159, 169
BmeRI	GACNNNNNGTC	1 cut(s)	219
BmiI	GGNNCC	1 cut(s)	268
BmrFI	CCNGG	2 cut(s)	159, 169
BpuEI	CTTGAG	2 cut(s)	7, 20
BsaI	GGTCTC	2 cut(s)	184, 227
BsaWI	WCCGGW	1 cut(s)	269
BsaXI	ACNNNNNCTCC	4 cut(s)	51, 62, 81, 92
Bsc4I	CCNNNNNNNGG	3 cut(s)	158, 218, 238
Bse118I	RCCGGY	1 cut(s)	254
BseAI	TCCGGA	1 cut(s)	269
BseBI	CCWGG	2 cut(s)	159, 169
BseGI	GGATG	2 cut(s)	29, 154
BseLI	CCNNNNNNNGG	3 cut(s)	158, 218, 238
BseMII	CTCAG	1 cut(s)	109
BseRI	GAGGAG	2 cut(s)	70, 73
Bsh1236I	CGCG	1 cut(s)	234
BsiSI	CCGG	3 cut(s)	239, 255, 270
BslI	CCNNNNNNNGG	3 cut(s)	158, 218, 238
BsmAI	GTCTC	2 cut(s)	184, 227
Bso31I	GGTCTC	2 cut(s)	184, 227
Bsp13I	TCCGGA	1 cut(s)	269
Bsp143I	GATC	1 cut(s)	327
BspACI	CCGC	2 cut(s)	136, 232
BspCNI	CTCAG	1 cut(s)	108
BspEI	TCCGGA	1 cut(s)	269
BspFNI	CGCG	1 cut(s)	234
BspLI	GGNNCC	1 cut(s)	268
BspTNI	GGTCTC	2 cut(s)	184, 227
BsrFI	RCCGGY	1 cut(s)	254
BssAI	RCCGGY	1 cut(s)	254
BssMI	GATC	1 cut(s)	327
Bst2UI	CCWGG	2 cut(s)	159, 169
Bst4CI	ACNGT	1 cut(s)	366
Bst6I	CTCTTC	1 cut(s)	187
BstDEI	CTNAG	1 cut(s)	95
BstF5I	GGATG	2 cut(s)	29, 154
BstFNI	CGCG	1 cut(s)	234
BstKTI	GATC	1 cut(s)	330
BstMAI	GTCTC	2 cut(s)	184, 227
BstMBI	GATC	1 cut(s)	327
BstMWI	GCNNNNNNNGC	1 cut(s)	264
BstNI	CCWGG	2 cut(s)	159, 169
BstSCI	CCNGG	2 cut(s)	157, 167
BstUI	CGCG	1 cut(s)	234
BstXI	CCANNNNNNTGG	1 cut(s)	175
BtsCI	GGATG	2 cut(s)	29, 154
BtsIMutI	CAGTG	1 cut(s)	362
Cfr10I	RCCGGY	1 cut(s)	254
CviAII	CATG	2 cut(s)	140, 175
CviJI	RGCY	6 cut(s)	5, 102, 162, 192, 258, 267
CviKI_1	RGCY	6 cut(s)	5, 102, 162, 192, 258, 267
DdeI	CTNAG	1 cut(s)	95
DpnI	GATC	1 cut(s)	329
DpnII	GATC	1 cut(s)	327
DriI	GACNNNNNGTC	1 cut(s)	219
Eam1104I	CTCTTC	1 cut(s)	187
Eam1105I	GACNNNNNGTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	187
Eco31I	GGTCTC	2 cut(s)	184, 227
EcoRII	CCWGG	2 cut(s)	157, 167
FaeI	CATG	2 cut(s)	143, 178
FaiI	YATR	2 cut(s)	141, 176
FatI	CATG	2 cut(s)	139, 174
FauI	CCCGC	2 cut(s)	143, 239
FbaI	TGATCA	1 cut(s)	327
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	2 cut(s)	16, 141
Fsp4HI	GCNGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	6
HapII	CCGG	3 cut(s)	239, 255, 270
Hin1II	CATG	2 cut(s)	143, 178
HinfI	GANTC	2 cut(s)	12, 208
HpaII	CCGG	3 cut(s)	239, 255, 270
HphI	GGTGA	1 cut(s)	244
Hpy188I	TCNGA	2 cut(s)	98, 213
Hpy188III	TCNNGA	7 cut(s)	24, 37, 120, 200, 224, 270, 350
HpyAV	CCTTC	2 cut(s)	65, 72
HpyCH4III	ACNGT	1 cut(s)	366
HpyF10VI	GCNNNNNNNGC	1 cut(s)	264
HpyF3I	CTNAG	1 cut(s)	95
Hsp92II	CATG	2 cut(s)	143, 178
Kpn2I	TCCGGA	1 cut(s)	269
Ksp22I	TGATCA	1 cut(s)	327
Kzo9I	GATC	1 cut(s)	327
LmnI	GCTCC	2 cut(s)	171, 272
LpnPI	CCDG	9 cut(s)	144, 154, 171, 181, 252, 268, 283, 304, 363
MalI	GATC	1 cut(s)	329
MboI	GATC	1 cut(s)	327
MboII	GAAGA	2 cut(s)	174, 177
MluCI	AATT	7 cut(s)	40, 73, 89, 125, 130, 345, 358
MmeI	TCCRAC	1 cut(s)	236
MnlI	CCTC	7 cut(s)	44, 88, 91, 94, 104, 113, 162
MroI	TCCGGA	1 cut(s)	269
MseI	TTAA	1 cut(s)	356
MspI	CCGG	3 cut(s)	239, 255, 270
MspR9I	CCNGG	2 cut(s)	159, 169
MvaI	CCWGG	2 cut(s)	159, 169
MvnI	CGCG	1 cut(s)	234
MwoI	GCNNNNNNNGC	1 cut(s)	264
NdeII	GATC	1 cut(s)	327
NlaIII	CATG	2 cut(s)	143, 178
NlaIV	GGNNCC	1 cut(s)	268
NmeAIII	GCCGAG	1 cut(s)	243
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PfeI	GAWTC	2 cut(s)	12, 208
PfoI	TCCNGGA	1 cut(s)	167
PkrI	GCNGC	1 cut(s)	7
Psp6I	CCWGG	2 cut(s)	157, 167
PspGI	CCWGG	2 cut(s)	157, 167
PspN4I	GGNNCC	1 cut(s)	268
SaqAI	TTAA	1 cut(s)	356
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	1 cut(s)	327
ScrFI	CCNGG	2 cut(s)	159, 169
SetI	ASST	3 cut(s)	64, 194, 279
SmlI	CTYRAG	2 cut(s)	22, 35
SmoI	CTYRAG	2 cut(s)	22, 35
Sse9I	AATT	7 cut(s)	40, 73, 89, 125, 130, 345, 358
SsiI	CCGC	2 cut(s)	136, 232
StyD4I	CCNGG	2 cut(s)	157, 167
TaaI	ACNGT	1 cut(s)	366
TaqI	TCGA	1 cut(s)	225
TasI	AATT	7 cut(s)	40, 73, 89, 125, 130, 345, 358
TfiI	GAWTC	2 cut(s)	12, 208
Tru1I	TTAA	1 cut(s)	356
Tru9I	TTAA	1 cut(s)	356
TscAI	CASTG	1 cut(s)	369
TseI	GCWGC	1 cut(s)	5
TspRI	CASTG	1 cut(s)	369
XapI	RAATTY	3 cut(s)	40, 345, 358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.