Rh2BG375400

COBW domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001734
Physical Location & Seq
Forward (+)
53034172 .. 53040121
5950 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG375400.1

Sequence Viewer

Length: 1077 bp
ATGGCTTCCATATCGGCCGACATAGCCGCCACCCTTCTCTCCCTAACTTCCCGTCACTCCATCCGGGTCGGAGCCCCGGCCCTATTCCCTCTCACATGGAGACCCCGGACTTCCCCACTGTCCCATACCCTCAGCTACTCCACTTCAACTTCCTCCTTTCGCCAGAGACTCGTCTCCAACTCTAAGCGGGGCTCGAGAAGGTTCACTGTGGCCGCCACCACTGCCACGCCACCGCAGAGTGACAGCTCCGACGTTTTGACCCAGATTCCGCCGGATAATCGTATCCCGGCGACCATAATTACCGGCTTCTTGGGCTCCGGAAAGACTACATTGCTTAATCATATATTGACTGCCGACCACGGGAAGCGAATTGCAGTGATTGAAAATGAGTATGGTGAAGTAGACATTGATGGTTCTTTGGTGGCTGCGAAATCCGCTGGGGCCGAAGATATTGTTATGCTGAATAATGGGTGCCTTTGCTGCACTGTGAGGGGTGATCTTGTGCGGATGATTTCAGACTTGGTTAATAAGAAGAAAGGGAGGTTTGATCATATTGTGATAGAGACTACAGGATTGGCAAATCCAGCACCGATAATTCAAACATTTTATGCGGAAGATCAGATTTTCAATGATGTCAAGTTGGACGGTGTTGTCACGTTAGTTGATGCTAAACATGCTCGACTTCATCTGGATGAAGTCAAGGCAGAAGGAGTGGTTAATGAGGCAGTAGAGCAGATTGCTTATGCTGATCGTATCATTGTGAATAAGACTGATCTTGTTGGCGAGTCAGATATTGCTTCTTTGGTGCAGAGAATAAGGAACATTAATGGCATGGCTCAACTGAAGCGTACAGAGTTTGGAAAAGTTAACCTGGATTATGTGCTTGGTATCGGAGGATTTGATTTGGAGAGGATAGAGAGTGCTATTGATGCTGAAGCTGAGAAGGAAGATCATGACCATCATCACGACCACCATGACCATCATCACCATCATCACCATCATGATGAAGAACATGATCACAAACATGGTAAATCTACTTTATCGTTGAAGCAGATGCTCATTTTTATAGTCTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CobW_C cobW

Protein Analysis

358

Amino Acids

39.41

Weight (kDa)

6.16

Isoelectric Point (pI)

36.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
cobW PF02492 96 - 280 1.2e-59 CobW/HypB/UreG, nucleotide-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1075
AasI GACNNNNNNGTC 1 cut(s) 650
AccB1I GGYRCC 1 cut(s) 471
AccI GTMKAC 1 cut(s) 402
AccIII TCCGGA 1 cut(s) 317
AciI CCGC 8 cut(s) 27, 187, 213, 233, 269, 435, 505, 611
AcoI YGGCCR 2 cut(s) 15, 210
AcuI CTGAAG 2 cut(s) 863, 954
AfaI GTAC 1 cut(s) 850
AfiI CCNNNNNNNGG 1 cut(s) 360
AgsI TTSAA 5 cut(s) 147, 383, 599, 628, 1048
AjnI CCWGG 1 cut(s) 870
AluBI AGCT 3 cut(s) 135, 246, 938
AluI AGCT 3 cut(s) 135, 246, 938
Alw26I GTCTC 4 cut(s) 94, 160, 178, 557
Ama87I CYCGRG 1 cut(s) 193
Aor13HI TCCGGA 1 cut(s) 317
AoxI GGCC 4 cut(s) 15, 78, 210, 441
ApeKI GCWGC 2 cut(s) 425, 480
AseI ATTAAT 1 cut(s) 825
AspS9I GGNCC 2 cut(s) 79, 441
AsuC2I CCSGG 4 cut(s) 65, 77, 106, 287
AsuHPI GGTGA 4 cut(s) 407, 506, 977, 986
AvaI CYCGRG 1 cut(s) 193
BanI GGYRCC 1 cut(s) 471
BanII GRGCYC 3 cut(s) 76, 194, 317
BbvCI CCTCAGC 1 cut(s) 131
BbvI GCAGC 2 cut(s) 412, 467
BccI CCATC 6 cut(s) 68, 404, 966, 987, 996, 1005
BciT130I CCWGG 1 cut(s) 872
BciVI GTATCC 1 cut(s) 293
BclI TGATCA 2 cut(s) 547, 1015
BcnI CCSGG 4 cut(s) 65, 77, 106, 287
BcoDI GTCTC 4 cut(s) 94, 160, 178, 557
BfmI CTRYAG 1 cut(s) 567
BfuI GTATCC 1 cut(s) 293
BisI GCNGC 4 cut(s) 27, 213, 426, 481
BlsI GCNGC 4 cut(s) 28, 214, 427, 482
Bme1390I CCNGG 5 cut(s) 65, 77, 106, 287, 872
BmeT110I CYCGRG 1 cut(s) 193
BmgT120I GGNCC 2 cut(s) 79, 441
BmiI GGNNCC 4 cut(s) 73, 316, 442, 473
BmrFI CCNGG 5 cut(s) 65, 77, 106, 287, 872
BmsI GCATC 3 cut(s) 655, 919, 1044
Bpu10I CCTNAGC 1 cut(s) 131
BpuMI CCSGG 4 cut(s) 65, 77, 106, 287
BsaI GGTCTC 1 cut(s) 94
BsaJI CCNNGG 3 cut(s) 75, 104, 358
BsaWI WCCGGW 1 cut(s) 317
Bsc4I CCNNNNNNNGG 1 cut(s) 360
Bse118I RCCGGY 1 cut(s) 302
Bse3DI GCAATG 1 cut(s) 329
BseAI TCCGGA 1 cut(s) 317
BseBI CCWGG 1 cut(s) 872
BseDI CCNNGG 3 cut(s) 75, 104, 358
BseGI GGATG 3 cut(s) 60, 513, 697
BseLI CCNNNNNNNGG 1 cut(s) 360
BseMI GCAATG 1 cut(s) 329
BseMII CTCAG 2 cut(s) 145, 930
BseX3I CGGCCG 1 cut(s) 15
BseXI GCAGC 2 cut(s) 412, 467
BseYI CCCAGC 1 cut(s) 437
BsgI GTGCAG 2 cut(s) 466, 827
Bsh1285I CGRYCG 1 cut(s) 18
BshFI GGCC 4 cut(s) 17, 80, 212, 443
BshNI GGYRCC 1 cut(s) 471
BsiEI CGRYCG 1 cut(s) 18
BsiHKCI CYCGRG 1 cut(s) 193
BsiSI CCGG 7 cut(s) 64, 77, 106, 272, 287, 303, 318
BslFI GGGAC 1 cut(s) 106
BslI CCNNNNNNNGG 1 cut(s) 360
BsmAI GTCTC 4 cut(s) 94, 160, 178, 557
BsmBI CGTCTC 1 cut(s) 178
BsmFI GGGAC 1 cut(s) 106
BsnI GGCC 4 cut(s) 17, 80, 212, 443
Bso31I GGTCTC 1 cut(s) 94
BsoBI CYCGRG 1 cut(s) 193
Bsp1286I GDGCHC 3 cut(s) 76, 194, 317
Bsp13I TCCGGA 1 cut(s) 317
Bsp143I GATC 7 cut(s) 496, 547, 616, 748, 772, 949, 1015
BspACI CCGC 8 cut(s) 27, 187, 213, 233, 269, 435, 505, 611
BspANI GGCC 4 cut(s) 17, 80, 212, 443
BspCNI CTCAG 2 cut(s) 144, 931
BspEI TCCGGA 1 cut(s) 317
BspHI TCATGA 2 cut(s) 952, 1000
BspLI GGNNCC 4 cut(s) 73, 316, 442, 473
BspT107I GGYRCC 1 cut(s) 471
BspTNI GGTCTC 1 cut(s) 94
BsrDI GCAATG 1 cut(s) 329
BsrFI RCCGGY 1 cut(s) 302
BssAI RCCGGY 1 cut(s) 302
BssECI CCNNGG 3 cut(s) 75, 104, 358
BssMI GATC 7 cut(s) 496, 547, 616, 748, 772, 949, 1015
Bst2UI CCWGG 1 cut(s) 872
Bst4CI ACNGT 4 cut(s) 120, 208, 487, 647
BstDEI CTNAG 3 cut(s) 131, 183, 939
BstDSI CCRYGG 1 cut(s) 358
BstF5I GGATG 3 cut(s) 60, 513, 697
BstKTI GATC 7 cut(s) 499, 550, 619, 751, 775, 952, 1018
BstMAI GTCTC 4 cut(s) 94, 160, 178, 557
BstMBI GATC 7 cut(s) 496, 547, 616, 748, 772, 949, 1015
BstMCI CGRYCG 1 cut(s) 18
BstMWI GCNNNNNNNGC 8 cut(s) 23, 221, 312, 434, 480, 584, 674, 929
BstNI CCWGG 1 cut(s) 872
BstNSI RCATGY 1 cut(s) 677
BstSCI CCNGG 5 cut(s) 63, 75, 104, 285, 870
BstSFI CTRYAG 1 cut(s) 567
BstV1I GCAGC 2 cut(s) 412, 467
BstZI CGGCCG 1 cut(s) 15
BsuI GTATCC 1 cut(s) 293
BsuRI GGCC 4 cut(s) 17, 80, 212, 443
BtgI CCRYGG 1 cut(s) 358
BtsCI GGATG 3 cut(s) 60, 513, 697
BtsI GCAGTG 2 cut(s) 219, 381
BtsIMutI CAGTG 5 cut(s) 116, 204, 219, 381, 483
CciI TCATGA 2 cut(s) 952, 1000
Cfr10I RCCGGY 1 cut(s) 302
Cfr13I GGNCC 2 cut(s) 79, 441
Csp6I GTAC 1 cut(s) 849
CviAII CATG 8 cut(s) 96, 674, 832, 953, 974, 1001, 1013, 1025
CviQI GTAC 1 cut(s) 849
DdeI CTNAG 3 cut(s) 131, 183, 939
DpnI GATC 7 cut(s) 498, 549, 618, 750, 774, 951, 1017
DpnII GATC 7 cut(s) 496, 547, 616, 748, 772, 949, 1015
DrdI GACNNNNNNGTC 1 cut(s) 650
DseDI GACNNNNNNGTC 1 cut(s) 650
EaeI YGGCCR 2 cut(s) 15, 210
EagI CGGCCG 1 cut(s) 15
EciI GGCGGA 1 cut(s) 258
EclXI CGGCCG 1 cut(s) 15
Eco24I GRGCYC 3 cut(s) 76, 194, 317
Eco31I GGTCTC 1 cut(s) 94
Eco52I CGGCCG 1 cut(s) 15
Eco57I CTGAAG 2 cut(s) 863, 954
Eco88I CYCGRG 1 cut(s) 193
EcoRII CCWGG 1 cut(s) 870
EcoT38I GRGCYC 3 cut(s) 76, 194, 317
Esp3I CGTCTC 1 cut(s) 178
FaeI CATG 8 cut(s) 99, 677, 835, 956, 977, 1004, 1016, 1028
FaqI GGGAC 1 cut(s) 106
FatI CATG 8 cut(s) 95, 673, 831, 952, 973, 1000, 1012, 1024
FauI CCCGC 1 cut(s) 180
FbaI TGATCA 2 cut(s) 547, 1015
FblI GTMKAC 1 cut(s) 402
Fnu4HI GCNGC 4 cut(s) 27, 213, 426, 481
FokI GGATG 3 cut(s) 47, 520, 704
FriOI GRGCYC 3 cut(s) 76, 194, 317
Fsp4HI GCNGC 4 cut(s) 27, 213, 426, 481
GluI GCNGC 4 cut(s) 27, 213, 426, 481
GsaI CCCAGC 1 cut(s) 441
HaeIII GGCC 4 cut(s) 17, 80, 212, 443
HapII CCGG 7 cut(s) 64, 77, 106, 272, 287, 303, 318
Hin1II CATG 8 cut(s) 99, 677, 835, 956, 977, 1004, 1016, 1028
HincII GTYRAC 1 cut(s) 868
HindII GTYRAC 1 cut(s) 868
HinfI GANTC 3 cut(s) 168, 265, 785
HpaI GTTAAC 1 cut(s) 868
HpaII CCGG 7 cut(s) 64, 77, 106, 272, 287, 303, 318
HphI GGTGA 4 cut(s) 407, 506, 977, 986
Hpy166II GTNNAC 3 cut(s) 204, 403, 868
Hpy188I TCNGA 6 cut(s) 71, 250, 517, 621, 790, 893
Hpy188III TCNNGA 6 cut(s) 195, 318, 689, 953, 965, 1001
Hpy8I GTNNAC 3 cut(s) 204, 403, 868
Hpy99I CGWCG 1 cut(s) 254
HpyAV CCTTC 4 cut(s) 44, 192, 701, 937
HpyCH4III ACNGT 4 cut(s) 120, 208, 487, 647
HpyCH4IV ACGT 2 cut(s) 252, 656
HpyCH4V TGCA 3 cut(s) 374, 483, 808
HpyF10VI GCNNNNNNNGC 8 cut(s) 23, 221, 312, 434, 480, 584, 674, 929
HpyF3I CTNAG 3 cut(s) 131, 183, 939
HpySE526I ACGT 2 cut(s) 252, 656
Hsp92II CATG 8 cut(s) 99, 677, 835, 956, 977, 1004, 1016, 1028
Kpn2I TCCGGA 1 cut(s) 317
Ksp22I TGATCA 2 cut(s) 547, 1015
KspAI GTTAAC 1 cut(s) 868
Kzo9I GATC 7 cut(s) 496, 547, 616, 748, 772, 949, 1015
LmnI GCTCC 3 cut(s) 71, 251, 320
Lsp1109I GCAGC 2 cut(s) 412, 467
LweI GCATC 3 cut(s) 655, 919, 1044
MaeII ACGT 2 cut(s) 252, 656
MaeIII GTNAC 3 cut(s) 53, 239, 652
MalI GATC 7 cut(s) 498, 549, 618, 750, 774, 951, 1017
MboI GATC 7 cut(s) 496, 547, 616, 748, 772, 949, 1015
MboII GAAGA 5 cut(s) 458, 544, 626, 959, 1019
MhlI GDGCHC 3 cut(s) 76, 194, 317
MluCI AATT 3 cut(s) 297, 369, 594
MlyI GAGTC 2 cut(s) 162, 794
MmeI TCCRAC 4 cut(s) 49, 201, 273, 621
MnlI CCTC 8 cut(s) 99, 140, 163, 483, 534, 715, 887, 903
MroI TCCGGA 1 cut(s) 317
MseI TTAA 5 cut(s) 336, 525, 717, 825, 867
MslI CAYNNNNRTG 4 cut(s) 690, 999, 1002, 1023
MspA1I CMGCKG 1 cut(s) 437
MspI CCGG 7 cut(s) 64, 77, 106, 272, 287, 303, 318
MspR9I CCNGG 5 cut(s) 65, 77, 106, 287, 872
MvaI CCWGG 1 cut(s) 872
MwoI GCNNNNNNNGC 8 cut(s) 23, 221, 312, 434, 480, 584, 674, 929
NciI CCSGG 4 cut(s) 65, 77, 106, 287
NdeII GATC 7 cut(s) 496, 547, 616, 748, 772, 949, 1015
NlaIII CATG 8 cut(s) 99, 677, 835, 956, 977, 1004, 1016, 1028
NlaIV GGNNCC 4 cut(s) 73, 316, 442, 473
NmuCI GTSAC 3 cut(s) 53, 239, 652
NspI RCATGY 1 cut(s) 677
PaeR7I CTCGAG 1 cut(s) 193
PagI TCATGA 2 cut(s) 952, 1000
PfeI GAWTC 1 cut(s) 265
PkrI GCNGC 4 cut(s) 28, 214, 427, 482
PleI GAGTC 2 cut(s) 162, 793
PpsI GAGTC 2 cut(s) 162, 793
PshBI ATTAAT 1 cut(s) 825
PsiI TTATAA 1 cut(s) 1075
Psp6I CCWGG 1 cut(s) 870
PspFI CCCAGC 1 cut(s) 437
PspGI CCWGG 1 cut(s) 870
PspN4I GGNNCC 4 cut(s) 73, 316, 442, 473
PspPI GGNCC 2 cut(s) 79, 441
RsaI GTAC 1 cut(s) 850
RsaNI GTAC 1 cut(s) 849
RseI CAYNNNNRTG 4 cut(s) 690, 999, 1002, 1023
SaqAI TTAA 5 cut(s) 336, 525, 717, 825, 867
SatI GCNGC 4 cut(s) 27, 213, 426, 481
Sau3AI GATC 7 cut(s) 496, 547, 616, 748, 772, 949, 1015
Sau96I GGNCC 2 cut(s) 79, 441
SchI GAGTC 2 cut(s) 162, 794
ScrFI CCNGG 5 cut(s) 65, 77, 106, 287, 872
SduI GDGCHC 3 cut(s) 76, 194, 317
SetI ASST 8 cut(s) 137, 203, 248, 255, 545, 659, 873, 940
SfaNI GCATC 3 cut(s) 655, 919, 1044
SfcI CTRYAG 1 cut(s) 567
Sfr274I CTCGAG 1 cut(s) 193
SlaI CTCGAG 1 cut(s) 193
SmiMI CAYNNNNRTG 4 cut(s) 690, 999, 1002, 1023
SmlI CTYRAG 1 cut(s) 193
SmoI CTYRAG 1 cut(s) 193
Sse9I AATT 3 cut(s) 297, 369, 594
SsiI CCGC 8 cut(s) 27, 187, 213, 233, 269, 435, 505, 611
StyD4I CCNGG 5 cut(s) 63, 75, 104, 285, 870
TaaI ACNGT 4 cut(s) 120, 208, 487, 647
TaiI ACGT 2 cut(s) 255, 659
TaqI TCGA 2 cut(s) 194, 679
TasI AATT 3 cut(s) 297, 369, 594
TauI GCSGC 2 cut(s) 29, 215
TfiI GAWTC 1 cut(s) 265
Tru1I TTAA 5 cut(s) 336, 525, 717, 825, 867
Tru9I TTAA 5 cut(s) 336, 525, 717, 825, 867
TscAI CASTG 5 cut(s) 123, 211, 226, 381, 490
TseFI GTSAC 3 cut(s) 53, 239, 652
TseI GCWGC 2 cut(s) 425, 480
Tsp45I GTSAC 3 cut(s) 53, 239, 652
TspDTI ATGAA 3 cut(s) 674, 708, 1020
TspRI CASTG 5 cut(s) 123, 211, 226, 381, 490
VspI ATTAAT 1 cut(s) 825
XceI RCATGY 1 cut(s) 677
XhoI CTCGAG 1 cut(s) 193
XmiI GTMKAC 1 cut(s) 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.