Rh4AG321200

COBW domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0001734
Physical Location & Seq
Forward (+)
63389552 .. 63390298
747 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG321200.1

Sequence Viewer

Length: 252 bp
ATGGTCTCTGCCTCAAGATACAATCTTGACAAGAATCCGTACTTGGGTCTCGATACCCGTGTTTCGGCGACCATTATCACCGGCTTTCTCGGTTCCGGAAAGACTACATTGCTCAATCATATACTAACATCTCAACATGGAAAGCGGATTGCGGTCATAGAAAATGAGAATATTTTGTGGAATAATTTCCATGTCGGTGGTTGCAATAAATTTTGTTTCCTGGAAGTTGAGTTAGTAATTTTTACGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CobW_C cobW

Protein Analysis

83

Amino Acids

9.3

Weight (kDa)

7.84

Isoelectric Point (pI)

37.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
cobW PF02492 23 - 56 2e-13 CobW/HypB/UreG, nucleotide-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 95
AciI CCGC 2 cut(s) 145, 152
AcsI RAATTY 1 cut(s) 209
AfaI GTAC 1 cut(s) 41
AfiI CCNNNNNNNGG 2 cut(s) 44, 64
AjnI CCWGG 1 cut(s) 219
AjuI GAANNNNNNNTTGG 2 cut(s) 26, 58
Alw26I GTCTC 2 cut(s) 10, 53
Aor13HI TCCGGA 1 cut(s) 95
ApoI RAATTY 1 cut(s) 209
Asp700I GAANNNNTTC 1 cut(s) 185
AsuHPI GGTGA 1 cut(s) 70
BaeI ACNNNNGTAYC 2 cut(s) 45, 78
BciT130I CCWGG 1 cut(s) 221
BcoDI GTCTC 2 cut(s) 10, 53
Bme1390I CCNGG 1 cut(s) 221
BmiI GGNNCC 1 cut(s) 94
BmrFI CCNGG 1 cut(s) 221
BsaI GGTCTC 2 cut(s) 10, 53
BsaWI WCCGGW 1 cut(s) 95
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 64
Bse118I RCCGGY 1 cut(s) 80
Bse3DI GCAATG 1 cut(s) 107
BseAI TCCGGA 1 cut(s) 95
BseBI CCWGG 1 cut(s) 221
BseLI CCNNNNNNNGG 2 cut(s) 44, 64
BseMI GCAATG 1 cut(s) 107
BsiSI CCGG 2 cut(s) 81, 96
BslI CCNNNNNNNGG 2 cut(s) 44, 64
BsmAI GTCTC 2 cut(s) 10, 53
Bso31I GGTCTC 2 cut(s) 10, 53
Bsp13I TCCGGA 1 cut(s) 95
BspACI CCGC 2 cut(s) 145, 152
BspEI TCCGGA 1 cut(s) 95
BspLI GGNNCC 1 cut(s) 94
BspTNI GGTCTC 2 cut(s) 10, 53
BsrDI GCAATG 1 cut(s) 107
BsrFI RCCGGY 1 cut(s) 80
BssAI RCCGGY 1 cut(s) 80
Bst2UI CCWGG 1 cut(s) 221
BstMAI GTCTC 2 cut(s) 10, 53
BstNI CCWGG 1 cut(s) 221
BstSCI CCNGG 1 cut(s) 219
BstXI CCANNNNNNTGG 1 cut(s) 197
Cfr10I RCCGGY 1 cut(s) 80
Csp6I GTAC 1 cut(s) 40
CviAII CATG 2 cut(s) 137, 191
CviJI RGCY 1 cut(s) 84
CviKI_1 RGCY 1 cut(s) 84
CviQI GTAC 1 cut(s) 40
Eco31I GGTCTC 2 cut(s) 10, 53
EcoRII CCWGG 1 cut(s) 219
FaeI CATG 2 cut(s) 140, 194
FaiI YATR 5 cut(s) 120, 122, 138, 158, 192
FatI CATG 2 cut(s) 136, 190
HapII CCGG 2 cut(s) 81, 96
Hin1II CATG 2 cut(s) 140, 194
HinfI GANTC 1 cut(s) 34
HpaII CCGG 2 cut(s) 81, 96
HphI GGTGA 1 cut(s) 70
Hpy188III TCNNGA 4 cut(s) 15, 26, 50, 96
HpyCH4IV ACGT 1 cut(s) 245
HpyCH4V TGCA 1 cut(s) 204
HpySE526I ACGT 1 cut(s) 245
Hsp92II CATG 2 cut(s) 140, 194
Kpn2I TCCGGA 1 cut(s) 95
LpnPI CCDG 4 cut(s) 94, 109, 206, 233
MaeII ACGT 1 cut(s) 245
MluCI AATT 3 cut(s) 184, 209, 237
MnlI CCTC 1 cut(s) 22
MroI TCCGGA 1 cut(s) 95
MroXI GAANNNNTTC 1 cut(s) 185
MslI CAYNNNNRTG 1 cut(s) 195
MspI CCGG 2 cut(s) 81, 96
MspR9I CCNGG 1 cut(s) 221
MvaI CCWGG 1 cut(s) 221
NlaIII CATG 2 cut(s) 140, 194
NlaIV GGNNCC 1 cut(s) 94
PdmI GAANNNNTTC 1 cut(s) 185
PfeI GAWTC 1 cut(s) 34
PfoI TCCNGGA 1 cut(s) 219
Psp6I CCWGG 1 cut(s) 219
PspGI CCWGG 1 cut(s) 219
PspN4I GGNNCC 1 cut(s) 94
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
RseI CAYNNNNRTG 1 cut(s) 195
ScrFI CCNGG 1 cut(s) 221
SetI ASST 1 cut(s) 248
SmiMI CAYNNNNRTG 1 cut(s) 195
SmlI CTYRAG 1 cut(s) 13
SmoI CTYRAG 1 cut(s) 13
Sse9I AATT 3 cut(s) 184, 209, 237
SsiI CCGC 2 cut(s) 145, 152
SspI AATATT 1 cut(s) 172
StyD4I CCNGG 1 cut(s) 219
TaiI ACGT 1 cut(s) 248
TaqI TCGA 1 cut(s) 51
TasI AATT 3 cut(s) 184, 209, 237
TfiI GAWTC 1 cut(s) 34
TspGWI ACGGA 1 cut(s) 27
XapI RAATTY 1 cut(s) 209
XmnI GAANNNNTTC 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.