Rh1AG268000

COBW domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001734
Physical Location & Seq
Reverse (-)
49504084 .. 49506295
2212 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG268000.1

Sequence Viewer

Length: 303 bp
ATGGTCTCTGCCTCAAGCTACAATCTTGACGAGAATCTGATCTTGGGTCTCCATACCCGTGTTCCGGCGACCATTATCACCGGCTTTCTCGGTTCCGGAAAGACTACATTGCTCAATCATATACTAACATCTCAACATGGAAAGCGGATTGCGTGTACTGAGAACCATAAGAGGCCTATCCGACTCTGTTCCAAAATCACAAGCGTCACAAGCTACGGCTTCGTTACGGTATGGGGCACCATCTCCTCCCTCACTGTTGTTCTTTCATCTCATAGAAAAAACAACAACAACAATTCTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CobW_C cobW

Protein Analysis

100

Amino Acids

10.91

Weight (kDa)

10.14

Isoelectric Point (pI)

40.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
cobW PF02492 22 - 56 9.3e-11 CobW/HypB/UreG, nucleotide-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 236
AccIII TCCGGA 1 cut(s) 95
AciI CCGC 1 cut(s) 145
AfaI GTAC 1 cut(s) 157
AfiI CCNNNNNNNGG 1 cut(s) 64
AjuI GAANNNNNNNTTGG 2 cut(s) 26, 58
AluBI AGCT 2 cut(s) 18, 213
AluI AGCT 2 cut(s) 18, 213
Alw26I GTCTC 2 cut(s) 10, 53
Aor13HI TCCGGA 1 cut(s) 95
AoxI GGCC 1 cut(s) 173
AsuHPI GGTGA 1 cut(s) 70
BaeGI GKGCMC 1 cut(s) 239
BanI GGYRCC 1 cut(s) 236
BccI CCATC 1 cut(s) 248
BceAI ACGGC 1 cut(s) 232
BcoDI GTCTC 2 cut(s) 10, 53
BmiI GGNNCC 2 cut(s) 94, 238
BsaI GGTCTC 2 cut(s) 10, 53
BsaWI WCCGGW 1 cut(s) 95
Bsc4I CCNNNNNNNGG 1 cut(s) 64
Bse118I RCCGGY 1 cut(s) 80
Bse3DI GCAATG 1 cut(s) 107
BseAI TCCGGA 1 cut(s) 95
BseLI CCNNNNNNNGG 1 cut(s) 64
BseMI GCAATG 1 cut(s) 107
BseMII CTCAG 1 cut(s) 150
BseRI GAGGAG 1 cut(s) 235
BseSI GKGCMC 1 cut(s) 239
BshFI GGCC 1 cut(s) 175
BshNI GGYRCC 1 cut(s) 236
BsiSI CCGG 3 cut(s) 65, 81, 96
BslI CCNNNNNNNGG 1 cut(s) 64
BsmAI GTCTC 2 cut(s) 10, 53
BsnI GGCC 1 cut(s) 175
Bso31I GGTCTC 2 cut(s) 10, 53
Bsp1286I GDGCHC 1 cut(s) 239
Bsp13I TCCGGA 1 cut(s) 95
Bsp143I GATC 1 cut(s) 39
BspACI CCGC 1 cut(s) 145
BspANI GGCC 1 cut(s) 175
BspCNI CTCAG 1 cut(s) 151
BspEI TCCGGA 1 cut(s) 95
BspLI GGNNCC 2 cut(s) 94, 238
BspT107I GGYRCC 1 cut(s) 236
BspTNI GGTCTC 2 cut(s) 10, 53
BsrDI GCAATG 1 cut(s) 107
BsrFI RCCGGY 1 cut(s) 80
BssAI RCCGGY 1 cut(s) 80
BssMI GATC 1 cut(s) 39
Bst4CI ACNGT 2 cut(s) 229, 256
BstDEI CTNAG 1 cut(s) 159
BstKTI GATC 1 cut(s) 42
BstMAI GTCTC 2 cut(s) 10, 53
BstMBI GATC 1 cut(s) 39
BstMWI GCNNNNNNNGC 1 cut(s) 210
BstSLI GKGCMC 1 cut(s) 239
BsuRI GGCC 1 cut(s) 175
BtsIMutI CAGTG 1 cut(s) 252
Cfr10I RCCGGY 1 cut(s) 80
CseI GACGC 1 cut(s) 193
Csp6I GTAC 1 cut(s) 156
CviAII CATG 1 cut(s) 137
CviJI RGCY 5 cut(s) 18, 84, 175, 213, 219
CviKI_1 RGCY 5 cut(s) 18, 84, 175, 213, 219
CviQI GTAC 1 cut(s) 156
DdeI CTNAG 1 cut(s) 159
DpnI GATC 1 cut(s) 41
DpnII GATC 1 cut(s) 39
Eco147I AGGCCT 1 cut(s) 175
Eco31I GGTCTC 2 cut(s) 10, 53
FaeI CATG 1 cut(s) 140
FaiI YATR 7 cut(s) 54, 120, 122, 138, 168, 232, 273
FatI CATG 1 cut(s) 136
HaeIII GGCC 1 cut(s) 175
HapII CCGG 3 cut(s) 65, 81, 96
HgaI GACGC 1 cut(s) 193
Hin1II CATG 1 cut(s) 140
HinfI GANTC 2 cut(s) 34, 183
HpaII CCGG 3 cut(s) 65, 81, 96
HphI GGTGA 1 cut(s) 70
Hpy166II GTNNAC 1 cut(s) 156
Hpy188I TCNGA 2 cut(s) 39, 182
Hpy188III TCNNGA 2 cut(s) 26, 96
Hpy8I GTNNAC 1 cut(s) 156
HpyCH4III ACNGT 2 cut(s) 229, 256
HpyF10VI GCNNNNNNNGC 1 cut(s) 210
HpyF3I CTNAG 1 cut(s) 159
Hsp92II CATG 1 cut(s) 140
Kpn2I TCCGGA 1 cut(s) 95
Kzo9I GATC 1 cut(s) 39
LpnPI CCDG 3 cut(s) 78, 94, 109
MaeIII GTNAC 2 cut(s) 205, 223
MalI GATC 1 cut(s) 41
MboI GATC 1 cut(s) 39
MhlI GDGCHC 1 cut(s) 239
MluCI AATT 1 cut(s) 292
MlyI GAGTC 1 cut(s) 177
MmeI TCCRAC 1 cut(s) 205
MnlI CCTC 4 cut(s) 22, 165, 256, 260
MroI TCCGGA 1 cut(s) 95
MslI CAYNNNNRTG 1 cut(s) 57
MspI CCGG 3 cut(s) 65, 81, 96
MwoI GCNNNNNNNGC 1 cut(s) 210
NdeII GATC 1 cut(s) 39
NlaIII CATG 1 cut(s) 140
NlaIV GGNNCC 2 cut(s) 94, 238
NmuCI GTSAC 1 cut(s) 205
PceI AGGCCT 1 cut(s) 175
PfeI GAWTC 1 cut(s) 34
PleI GAGTC 1 cut(s) 177
PpsI GAGTC 1 cut(s) 177
PspN4I GGNNCC 2 cut(s) 94, 238
RsaI GTAC 1 cut(s) 157
RsaNI GTAC 1 cut(s) 156
RseI CAYNNNNRTG 1 cut(s) 57
Sau3AI GATC 1 cut(s) 39
SchI GAGTC 1 cut(s) 177
SduI GDGCHC 1 cut(s) 239
SetI ASST 2 cut(s) 20, 215
SmiMI CAYNNNNRTG 1 cut(s) 57
SmlI CTYRAG 1 cut(s) 13
SmoI CTYRAG 1 cut(s) 13
Sse9I AATT 1 cut(s) 292
SseBI AGGCCT 1 cut(s) 175
SsiI CCGC 1 cut(s) 145
StuI AGGCCT 1 cut(s) 175
TaaI ACNGT 2 cut(s) 229, 256
TasI AATT 1 cut(s) 292
TatI WGTACW 1 cut(s) 155
TfiI GAWTC 1 cut(s) 34
TscAI CASTG 1 cut(s) 259
TseFI GTSAC 1 cut(s) 205
Tsp45I GTSAC 1 cut(s) 205
TspDTI ATGAA 1 cut(s) 255
TspRI CASTG 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.