Rorug07G0138200

COBW domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0001734
Physical Location & Seq
Reverse (-)
10901237 .. 10901656
420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0138200.1

Sequence Viewer

Length: 420 bp
ATGGACGTGCTTAGCTGGAATTGCAGAGGCATCTGCAATGATACAACTACGAGGGCCTTGAAGGATCTTATATCTAAGAATAGGGCCCAAATCGTGTTTCTTTGTGAGACAAAAATCTCACGTATTGAGGATTTCCAAAATCTGCATCGTGCCTTAGGGTTTCAGCAGTATAAGGAGGTTTTGAGTACTAGTCAATCTGGAGGGTTAGCTATGTTCTGGAATGACGAAATTACGGTGGATGTAAGGACCAGTTCGCAGCATCACATTGATTTGCAGATCGGTGGTGGTCCGGGAGAGTCCCTTTGGAGGCTAACGGGGTTCTATGGATATGCATGTACCACTGAACGAGATCGTTCCTGGCAACTTCTTAGGGACTTGTGTGATCTCGATTATTTACCATGGCTTGTGTTAATGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CobW_C cobW

Protein Analysis

139

Amino Acids

16.02

Weight (kDa)

5.53

Isoelectric Point (pI)

48.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 4 - 136 6.4e-09 Endonuclease/Exonuclease/phosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 72
AfaI GTAC 2 cut(s) 187, 337
AfiI CCNNNNNNNGG 1 cut(s) 306
AgsI TTSAA 1 cut(s) 61
AhlI ACTAGT 1 cut(s) 188
AjiI CACGTC 1 cut(s) 7
AjnI CCWGG 1 cut(s) 356
AjuI GAANNNNNNNTTGG 2 cut(s) 81, 113
AluBI AGCT 2 cut(s) 15, 209
AluI AGCT 2 cut(s) 15, 209
Alw26I GTCTC 1 cut(s) 101
AlwI GGATC 1 cut(s) 72
AoxI GGCC 2 cut(s) 54, 84
ApaI GGGCCC 1 cut(s) 88
ApeKI GCWGC 1 cut(s) 256
AspS9I GGNCC 5 cut(s) 54, 84, 85, 246, 287
AsuC2I CCSGG 1 cut(s) 291
AvaII GGWCC 2 cut(s) 246, 287
AxyI CCTNAGG 1 cut(s) 154
BaeGI GKGCMC 1 cut(s) 88
BanII GRGCYC 1 cut(s) 88
BbvI GCAGC 1 cut(s) 268
BciT130I CCWGG 1 cut(s) 358
BcnI CCSGG 1 cut(s) 291
BcoDI GTCTC 1 cut(s) 101
BcuI ACTAGT 1 cut(s) 188
BfaI CTAG 1 cut(s) 189
BisI GCNGC 1 cut(s) 257
BlpI GCTNAGC 1 cut(s) 11
BlsI GCNGC 1 cut(s) 258
BmcAI AGTACT 1 cut(s) 187
Bme1390I CCNGG 2 cut(s) 291, 358
Bme18I GGWCC 2 cut(s) 246, 287
BmgBI CACGTC 1 cut(s) 7
BmgT120I GGNCC 5 cut(s) 54, 84, 85, 246, 287
BmiI GGNNCC 1 cut(s) 86
BmrFI CCNGG 2 cut(s) 291, 358
BmsI GCATC 3 cut(s) 39, 154, 268
BpmI CTGGAG 1 cut(s) 219
Bpu1102I GCTNAGC 1 cut(s) 11
BpuMI CCSGG 1 cut(s) 291
BsaAI YACGTR 1 cut(s) 122
BsaJI CCNNGG 1 cut(s) 398
Bsc4I CCNNNNNNNGG 1 cut(s) 306
Bse1I ACTGG 1 cut(s) 249
Bse21I CCTNAGG 1 cut(s) 154
Bse3DI GCAATG 1 cut(s) 43
BseBI CCWGG 1 cut(s) 358
BseDI CCNNGG 1 cut(s) 398
BseGI GGATG 1 cut(s) 244
BseLI CCNNNNNNNGG 1 cut(s) 306
BseMI GCAATG 1 cut(s) 43
BseNI ACTGG 1 cut(s) 249
BseSI GKGCMC 1 cut(s) 88
BseXI GCAGC 1 cut(s) 268
BshFI GGCC 2 cut(s) 56, 86
BsiSI CCGG 1 cut(s) 290
BslFI GGGAC 2 cut(s) 283, 386
BslI CCNNNNNNNGG 1 cut(s) 306
BsmAI GTCTC 1 cut(s) 101
BsmFI GGGAC 2 cut(s) 283, 386
BsnI GGCC 2 cut(s) 56, 86
Bsp120I GGGCCC 1 cut(s) 84
Bsp1286I GDGCHC 1 cut(s) 88
Bsp143I GATC 4 cut(s) 64, 276, 349, 382
Bsp1720I GCTNAGC 1 cut(s) 11
Bsp19I CCATGG 1 cut(s) 398
BspANI GGCC 2 cut(s) 56, 86
BspLI GGNNCC 1 cut(s) 86
BspPI GGATC 1 cut(s) 72
BsrDI GCAATG 1 cut(s) 43
BsrI ACTGG 1 cut(s) 249
BssECI CCNNGG 1 cut(s) 398
BssMI GATC 4 cut(s) 64, 276, 349, 382
BssT1I CCWWGG 1 cut(s) 398
Bst2UI CCWGG 1 cut(s) 358
Bst4CI ACNGT 1 cut(s) 235
BstBAI YACGTR 1 cut(s) 122
BstDEI CTNAG 4 cut(s) 11, 75, 154, 368
BstDSI CCRYGG 1 cut(s) 398
BstF5I GGATG 1 cut(s) 244
BstKTI GATC 4 cut(s) 67, 279, 352, 385
BstMAI GTCTC 1 cut(s) 101
BstMBI GATC 4 cut(s) 64, 276, 349, 382
BstMWI GCNNNNNNNGC 1 cut(s) 21
BstNI CCWGG 1 cut(s) 358
BstNSI RCATGY 1 cut(s) 336
BstSCI CCNGG 2 cut(s) 289, 356
BstSLI GKGCMC 1 cut(s) 88
BstV1I GCAGC 1 cut(s) 268
BstX2I RGATCY 1 cut(s) 64
BstYI RGATCY 1 cut(s) 64
Bsu36I CCTNAGG 1 cut(s) 154
BsuRI GGCC 2 cut(s) 56, 86
BtgI CCRYGG 1 cut(s) 398
BtrI CACGTC 1 cut(s) 7
BtsCI GGATG 1 cut(s) 244
BtsIMutI CAGTG 1 cut(s) 339
Cfr13I GGNCC 5 cut(s) 54, 84, 85, 246, 287
Csp6I GTAC 2 cut(s) 186, 336
CviAII CATG 2 cut(s) 333, 399
CviJI RGCY 6 cut(s) 15, 56, 86, 209, 310, 403
CviKI_1 RGCY 6 cut(s) 15, 56, 86, 209, 310, 403
CviQI GTAC 2 cut(s) 186, 336
DdeI CTNAG 4 cut(s) 11, 75, 154, 368
DpnI GATC 4 cut(s) 66, 278, 351, 384
DpnII GATC 4 cut(s) 64, 276, 349, 382
Eco130I CCWWGG 1 cut(s) 398
Eco24I GRGCYC 1 cut(s) 88
Eco47I GGWCC 2 cut(s) 246, 287
Eco81I CCTNAGG 1 cut(s) 154
EcoO109I RGGNCCY 2 cut(s) 54, 84
EcoRII CCWGG 1 cut(s) 356
EcoT14I CCWWGG 1 cut(s) 398
EcoT22I ATGCAT 1 cut(s) 334
EcoT38I GRGCYC 1 cut(s) 88
ErhI CCWWGG 1 cut(s) 398
FaeI CATG 2 cut(s) 336, 402
FaiI YATR 7 cut(s) 71, 171, 212, 324, 330, 334, 400
FaqI GGGAC 2 cut(s) 283, 386
FatI CATG 2 cut(s) 332, 398
Fnu4HI GCNGC 1 cut(s) 257
FokI GGATG 1 cut(s) 251
FriOI GRGCYC 1 cut(s) 88
Fsp4HI GCNGC 1 cut(s) 257
FspBI CTAG 1 cut(s) 189
GluI GCNGC 1 cut(s) 257
GsuI CTGGAG 1 cut(s) 219
HaeIII GGCC 2 cut(s) 56, 86
HapII CCGG 1 cut(s) 290
Hin1II CATG 2 cut(s) 336, 402
HinfI GANTC 1 cut(s) 296
HpaII CCGG 1 cut(s) 290
Hpy188III TCNNGA 3 cut(s) 198, 217, 386
HpyAV CCTTC 1 cut(s) 55
HpyCH4III ACNGT 1 cut(s) 235
HpyCH4IV ACGT 2 cut(s) 6, 121
HpyCH4V TGCA 5 cut(s) 24, 36, 145, 274, 332
HpyF10VI GCNNNNNNNGC 1 cut(s) 21
HpyF3I CTNAG 4 cut(s) 11, 75, 154, 368
HpySE526I ACGT 2 cut(s) 6, 121
Hsp92II CATG 2 cut(s) 336, 402
Kzo9I GATC 4 cut(s) 64, 276, 349, 382
LpnPI CCDG 6 cut(s) 183, 202, 262, 303, 343, 370
Lsp1109I GCAGC 1 cut(s) 268
LweI GCATC 3 cut(s) 39, 154, 268
MaeI CTAG 1 cut(s) 189
MaeII ACGT 2 cut(s) 6, 121
MalI GATC 4 cut(s) 66, 278, 351, 384
MboI GATC 4 cut(s) 64, 276, 349, 382
MflI RGATCY 1 cut(s) 64
MhlI GDGCHC 1 cut(s) 88
MluCI AATT 2 cut(s) 19, 228
MlyI GAGTC 1 cut(s) 305
MnlI CCTC 6 cut(s) 20, 45, 121, 169, 194, 300
Mph1103I ATGCAT 1 cut(s) 334
MseI TTAA 1 cut(s) 410
MspI CCGG 1 cut(s) 290
MspR9I CCNGG 2 cut(s) 291, 358
MvaI CCWGG 1 cut(s) 358
MwoI GCNNNNNNNGC 1 cut(s) 21
NciI CCSGG 1 cut(s) 291
NcoI CCATGG 1 cut(s) 398
NdeII GATC 4 cut(s) 64, 276, 349, 382
NlaIII CATG 2 cut(s) 336, 402
NlaIV GGNNCC 1 cut(s) 86
NsiI ATGCAT 1 cut(s) 334
NspI RCATGY 1 cut(s) 336
PfoI TCCNGGA 1 cut(s) 289
PkrI GCNGC 1 cut(s) 258
PleI GAGTC 1 cut(s) 304
PpsI GAGTC 1 cut(s) 304
Ppu21I YACGTR 1 cut(s) 122
Psp6I CCWGG 1 cut(s) 356
PspGI CCWGG 1 cut(s) 356
PspN4I GGNNCC 1 cut(s) 86
PspOMI GGGCCC 1 cut(s) 84
PspPI GGNCC 5 cut(s) 54, 84, 85, 246, 287
PsuI RGATCY 1 cut(s) 64
RsaI GTAC 2 cut(s) 187, 337
RsaNI GTAC 2 cut(s) 186, 336
SaqAI TTAA 1 cut(s) 410
SatI GCNGC 1 cut(s) 257
Sau3AI GATC 4 cut(s) 64, 276, 349, 382
Sau96I GGNCC 5 cut(s) 54, 84, 85, 246, 287
ScaI AGTACT 1 cut(s) 187
SchI GAGTC 1 cut(s) 305
ScrFI CCNGG 2 cut(s) 291, 358
SduI GDGCHC 1 cut(s) 88
SetI ASST 5 cut(s) 9, 17, 124, 180, 211
SfaNI GCATC 3 cut(s) 39, 154, 268
SinI GGWCC 2 cut(s) 246, 287
SpeI ACTAGT 1 cut(s) 188
Sse9I AATT 2 cut(s) 19, 228
SspMI CTAG 1 cut(s) 189
StyD4I CCNGG 2 cut(s) 289, 356
StyI CCWWGG 1 cut(s) 398
TaaI ACNGT 1 cut(s) 235
TaiI ACGT 2 cut(s) 9, 124
TaqI TCGA 1 cut(s) 387
TasI AATT 2 cut(s) 19, 228
TatI WGTACW 1 cut(s) 185
Tru1I TTAA 1 cut(s) 410
Tru9I TTAA 1 cut(s) 410
TscAI CASTG 1 cut(s) 346
TseI GCWGC 1 cut(s) 256
TspRI CASTG 1 cut(s) 346
VpaK11BI GGWCC 2 cut(s) 246, 287
XceI RCATGY 1 cut(s) 336
XspI CTAG 1 cut(s) 189
ZrmI AGTACT 1 cut(s) 187
Zsp2I ATGCAT 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.