RLG00000003960

Patellin-3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0003961
Physical Location & Seq
Forward (+)
54736883 .. 54738426
1544 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003960

Sequence Viewer

Length: 627 bp
ATGTTTTGTTATGTTCCAAAACACGATCCACTGGAGGAGCAGTTTGAGATCGATGCTGTTGTGGAGGAAGATCTAGGTGGTGATTTAGAAAAAGTGGTGTTTATGCATGGGTATGACAGAGAGGATCATGGAGAGGCCCTTGTTCAAGGCGGTGTTGGGATTTGTGGATTTTGTGTGGTGGTGAAGATAGGGATCTGGGGGATTAGAAATGAGAAGTTAAGTGGCAGTGTCTTGGAGAAGATGAATAAGCATGGTTGTGGTGGAGAGCTCAGTGGTGGTTATAGTGGAGAGCGCAGTGATGGTTATGGTGGCAGTGGCGGTGGAGAGCTTGGTGATGGGTATGGTGACCTTGGGCCCAAACAAAAGAAGAATAAACCTTATTCTCCTTCGGCGTGGATTATAAGAGATGAGCGCAGCCCAATATATCATAAAACTTTTAGACAGAAACAAAGATTTGGGCTCGATCAGACCCACCTGTTCTTCCTTGAGAGAGTTGATAGAATAGTCGTACTAGTTATCAAAACACTTATGAAACCTATCTACTTCATGGAGCAGAGAGAAGTTAGAGAAGTGATGGAGCAGAGGGGCGATGGAGAGCCGAAGGGCGATGAAGAGCTGCGGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0009507 GO:0009536 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO CRAL_TRIO_N

Protein Analysis

209

Amino Acids

23.35

Weight (kDa)

5.35

Isoelectric Point (pI)

36.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 401
AciI CCGC 3 cut(s) 150, 318, 619
AclWI GGATC 3 cut(s) 20, 132, 200
AfaI GTAC 1 cut(s) 510
AgsI TTSAA 1 cut(s) 146
AhlI ACTAGT 1 cut(s) 511
AluBI AGCT 3 cut(s) 268, 328, 616
AluI AGCT 3 cut(s) 268, 328, 616
Alw21I GWGCWC 1 cut(s) 270
AlwI GGATC 3 cut(s) 20, 132, 200
AoxI GGCC 2 cut(s) 135, 353
ApaI GGGCCC 1 cut(s) 357
ApeKI GCWGC 2 cut(s) 414, 616
AspLEI GCGC 2 cut(s) 294, 414
AspS9I GGNCC 3 cut(s) 136, 353, 354
AsuHPI GGTGA 4 cut(s) 92, 193, 344, 356
BaeGI GKGCMC 1 cut(s) 357
BanII GRGCYC 3 cut(s) 270, 357, 462
Bbv12I GWGCWC 1 cut(s) 270
BbvI GCAGC 2 cut(s) 426, 603
BccI CCATC 4 cut(s) 293, 329, 568, 584
BcuI ACTAGT 1 cut(s) 511
BfaI CTAG 2 cut(s) 74, 512
BglII AGATCT 1 cut(s) 70
BisI GCNGC 2 cut(s) 415, 617
BlsI GCNGC 2 cut(s) 416, 618
BmgT120I GGNCC 3 cut(s) 136, 353, 354
BmiI GGNNCC 1 cut(s) 355
BmsI GCATC 1 cut(s) 43
BpmI CTGGAG 1 cut(s) 53
BpuEI CTTGAG 1 cut(s) 506
Bsa29I ATCGAT 1 cut(s) 51
BsaBI GATNNNNATC 1 cut(s) 191
BsaJI CCNNGG 1 cut(s) 349
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bse1I ACTGG 1 cut(s) 36
Bse8I GATNNNNATC 1 cut(s) 191
BseCI ATCGAT 1 cut(s) 51
BseDI CCNNGG 1 cut(s) 349
BseJI GATNNNNATC 1 cut(s) 191
BseMII CTCAG 1 cut(s) 283
BseNI ACTGG 1 cut(s) 36
BseRI GAGGAG 1 cut(s) 50
BseSI GKGCMC 1 cut(s) 357
BseXI GCAGC 2 cut(s) 426, 603
BshFI GGCC 2 cut(s) 137, 355
BshVI ATCGAT 1 cut(s) 51
BsiHKAI GWGCWC 1 cut(s) 270
BsnI GGCC 2 cut(s) 137, 355
Bsp120I GGGCCC 1 cut(s) 353
Bsp1286I GDGCHC 3 cut(s) 270, 357, 462
Bsp143I GATC 6 cut(s) 25, 48, 70, 124, 192, 463
BspACI CCGC 3 cut(s) 150, 318, 619
BspANI GGCC 2 cut(s) 137, 355
BspCNI CTCAG 1 cut(s) 282
BspDI ATCGAT 1 cut(s) 51
BspLI GGNNCC 1 cut(s) 355
BspPI GGATC 3 cut(s) 20, 132, 200
BspQI GCTCTTC 1 cut(s) 606
BsrI ACTGG 1 cut(s) 36
BssECI CCNNGG 1 cut(s) 349
BssMI GATC 6 cut(s) 25, 48, 70, 124, 192, 463
BssT1I CCWWGG 1 cut(s) 349
Bst6I CTCTTC 1 cut(s) 606
BstDEI CTNAG 1 cut(s) 269
BstEII GGTNACC 1 cut(s) 344
BstHHI GCGC 2 cut(s) 294, 414
BstKTI GATC 6 cut(s) 28, 51, 73, 127, 195, 466
BstMBI GATC 6 cut(s) 25, 48, 70, 124, 192, 463
BstPI GGTNACC 1 cut(s) 344
BstSLI GKGCMC 1 cut(s) 357
BstV1I GCAGC 2 cut(s) 426, 603
BstX2I RGATCY 2 cut(s) 70, 192
BstYI RGATCY 2 cut(s) 70, 192
Bsu15I ATCGAT 1 cut(s) 51
BsuRI GGCC 2 cut(s) 137, 355
BsuTUI ATCGAT 1 cut(s) 51
BtgZI GCGATG 2 cut(s) 603, 621
BtsI GCAGTG 3 cut(s) 232, 301, 319
BtsIMutI CAGTG 5 cut(s) 29, 232, 277, 301, 319
CfoI GCGC 2 cut(s) 294, 414
Cfr13I GGNCC 3 cut(s) 136, 353, 354
ClaI ATCGAT 1 cut(s) 51
Csp6I GTAC 1 cut(s) 509
CviAII CATG 4 cut(s) 107, 128, 251, 547
CviJI RGCY 8 cut(s) 137, 268, 328, 355, 417, 460, 598, 616
CviKI_1 RGCY 8 cut(s) 137, 268, 328, 355, 417, 460, 598, 616
CviQI GTAC 1 cut(s) 509
DdeI CTNAG 1 cut(s) 269
DpnI GATC 6 cut(s) 27, 50, 72, 126, 194, 465
DpnII GATC 6 cut(s) 25, 48, 70, 124, 192, 463
Eam1104I CTCTTC 1 cut(s) 606
EarI CTCTTC 1 cut(s) 606
Ecl136II GAGCTC 1 cut(s) 268
Eco130I CCWWGG 1 cut(s) 349
Eco24I GRGCYC 3 cut(s) 270, 357, 462
Eco53kI GAGCTC 1 cut(s) 268
Eco91I GGTNACC 1 cut(s) 344
EcoICRI GAGCTC 1 cut(s) 268
EcoO109I RGGNCCY 1 cut(s) 136
EcoO65I GGTNACC 1 cut(s) 344
EcoT14I CCWWGG 1 cut(s) 349
EcoT22I ATGCAT 1 cut(s) 108
EcoT38I GRGCYC 3 cut(s) 270, 357, 462
ErhI CCWWGG 1 cut(s) 349
FaeI CATG 4 cut(s) 110, 131, 254, 550
FatI CATG 4 cut(s) 106, 127, 250, 546
FauI CCCGC 1 cut(s) 612
Fnu4HI GCNGC 2 cut(s) 415, 617
FriOI GRGCYC 3 cut(s) 270, 357, 462
Fsp4HI GCNGC 2 cut(s) 415, 617
FspBI CTAG 2 cut(s) 74, 512
GlaI GCGC 2 cut(s) 293, 413
GluI GCNGC 2 cut(s) 415, 617
GsuI CTGGAG 1 cut(s) 53
HaeIII GGCC 2 cut(s) 137, 355
HhaI GCGC 2 cut(s) 294, 414
Hin1II CATG 4 cut(s) 110, 131, 254, 550
Hin6I GCGC 2 cut(s) 292, 412
HinP1I GCGC 2 cut(s) 292, 412
HphI GGTGA 4 cut(s) 92, 193, 344, 356
Hpy188I TCNGA 1 cut(s) 468
HpyAV CCTTC 2 cut(s) 396, 595
HpyCH4V TGCA 1 cut(s) 106
HpyF3I CTNAG 1 cut(s) 269
Hsp92II CATG 4 cut(s) 110, 131, 254, 550
HspAI GCGC 2 cut(s) 292, 412
Kzo9I GATC 6 cut(s) 25, 48, 70, 124, 192, 463
LguI GCTCTTC 1 cut(s) 606
LmnI GCTCC 3 cut(s) 37, 550, 577
LpnPI CCDG 3 cut(s) 17, 181, 488
Lsp1109I GCAGC 2 cut(s) 426, 603
LweI GCATC 1 cut(s) 43
MaeI CTAG 2 cut(s) 74, 512
MaeIII GTNAC 1 cut(s) 344
MalI GATC 6 cut(s) 27, 50, 72, 126, 194, 465
MboI GATC 6 cut(s) 25, 48, 70, 124, 192, 463
MboII GAAGA 6 cut(s) 80, 196, 250, 379, 472, 623
MflI RGATCY 2 cut(s) 70, 192
MhlI GDGCHC 3 cut(s) 270, 357, 462
MnlI CCTC 5 cut(s) 28, 58, 115, 127, 576
Mph1103I ATGCAT 1 cut(s) 108
MseI TTAA 1 cut(s) 218
MslI CAYNNNNRTG 2 cut(s) 111, 255
NdeII GATC 6 cut(s) 25, 48, 70, 124, 192, 463
NlaIII CATG 4 cut(s) 110, 131, 254, 550
NlaIV GGNNCC 1 cut(s) 355
NmuCI GTSAC 1 cut(s) 344
NsiI ATGCAT 1 cut(s) 108
PciSI GCTCTTC 1 cut(s) 606
PkrI GCNGC 2 cut(s) 416, 618
PsiI TTATAA 1 cut(s) 401
Psp124BI GAGCTC 1 cut(s) 270
PspEI GGTNACC 1 cut(s) 344
PspN4I GGNNCC 1 cut(s) 355
PspOMI GGGCCC 1 cut(s) 353
PspPI GGNCC 3 cut(s) 136, 353, 354
PsuI RGATCY 2 cut(s) 70, 192
RsaI GTAC 1 cut(s) 510
RsaNI GTAC 1 cut(s) 509
RseI CAYNNNNRTG 2 cut(s) 111, 255
SacI GAGCTC 1 cut(s) 270
SapI GCTCTTC 1 cut(s) 606
SaqAI TTAA 1 cut(s) 218
SatI GCNGC 2 cut(s) 415, 617
Sau3AI GATC 6 cut(s) 25, 48, 70, 124, 192, 463
Sau96I GGNCC 3 cut(s) 136, 353, 354
SduI GDGCHC 3 cut(s) 270, 357, 462
SetI ASST 8 cut(s) 79, 270, 330, 351, 379, 477, 538, 618
SfaNI GCATC 1 cut(s) 43
SmiMI CAYNNNNRTG 2 cut(s) 111, 255
SmlI CTYRAG 1 cut(s) 485
SmoI CTYRAG 1 cut(s) 485
SpeI ACTAGT 1 cut(s) 511
SsiI CCGC 3 cut(s) 150, 318, 619
SspMI CTAG 2 cut(s) 74, 512
SstI GAGCTC 1 cut(s) 270
StyI CCWWGG 1 cut(s) 349
TaqI TCGA 2 cut(s) 51, 462
Tru1I TTAA 1 cut(s) 218
Tru9I TTAA 1 cut(s) 218
TscAI CASTG 5 cut(s) 36, 232, 277, 301, 319
TseFI GTSAC 1 cut(s) 344
TseI GCWGC 2 cut(s) 414, 616
Tsp45I GTSAC 1 cut(s) 344
TspDTI ATGAA 4 cut(s) 257, 535, 545, 624
TspRI CASTG 5 cut(s) 36, 232, 277, 301, 319
XspI CTAG 2 cut(s) 74, 512
Zsp2I ATGCAT 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.