Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002343.1

Orthogroup ID

OG0003961

Physical Location & Seq

Genomic Coordinates Reverse (-)

411442 .. 411975

Gene Structure 534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002343.1_g000077.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

atgccattattggcttctaatgattgcaatggtacatatttcctaagagacaggtttggagatattgttggtgtcttcaaacccagagatgaggagtatggagcaataaataaccccaggggaaagtattcgctaccggatgatctgaagaaagtggtggaggtcggaggatgggctgaaagggaagtggcagcttatctcttggatcatgggtttgctgatgttcctttgacactgatggttaagtgttttcagaagtctgttgatgatgcttcacaagtgaatgagaaggttggttcactacaaaagtatatgaagcacaaaggaagtttagatgagtttggttgtggctgtttttcgactcatgatgtgcataagttatcagttttggatgttagaattgctaacatagatagacacatgacaaatatgttggttgcccatgatggcaaactaattcctattgatcatggctgctgcttgctagaaactctcctgttaccaacatctataatatcttctccaccacagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PI3_PI4_kinase ubiquitin

Protein Analysis

177

Amino Acids

19.63

Weight (kDa)

5.76

Isoelectric Point (pI)

20.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003961)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g10910
rosa_chinensis	RchiOBHm_Chr4g0392531 RchiOBHm_Chr4g0410971
rosa_laevigata	RLG00000003960 RLG00000022712 RLG00000029384 RLG00000034084 RLG00000034554
rosa_multiflora	Rmu_sc0002343.1_g000077 Rmu_sc0006432.1_g000008 Rmu_sc0037170.1_g000002
rosa_roxburghii	Rroxscaffold_1G00033090 Rroxscaffold_1G00060150 Rroxscaffold_2G00117630 Rroxscaffold_2G00128320 Rroxscaffold_3G00245960 Rroxscaffold_5G00342110 Rroxscaffold_5G00366850 Rroxscaffold_5G00368690
rosa_samantha	Rh1DG127400 Rh2AG332200 Rh2AG463900 Rh2AG480800 Rh2CG467000 Rh3BG346400 Rh3CG344300 Rh3DG345500 Rh4AG256100 Rh4BG049600 Rh4BG261400 Rh5AG320600 Rh5BG126500 Rh5CG356300 Rh5DG556100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	213
AcuI	CTGAAG	1 cut(s)	167
AfaI	GTAC	1 cut(s)	34
AgsI	TTSAA	1 cut(s)	79
AjnI	CCWGG	1 cut(s)	116
AluBI	AGCT	1 cut(s)	194
AluI	AGCT	1 cut(s)	194
Alw26I	GTCTC	1 cut(s)	42
AlwI	GGATC	1 cut(s)	213
ApeKI	GCWGC	3 cut(s)	191, 474, 477
Asp700I	GAANNNNTTC	1 cut(s)	127
BbsI	GAAGAC	1 cut(s)	67
BbvI	GCAGC	3 cut(s)	203, 461, 464
BccI	CCATC	3 cut(s)	165, 232, 440
BciT130I	CCWGG	1 cut(s)	118
BclI	TGATCA	1 cut(s)	466
BcoDI	GTCTC	1 cut(s)	42
BfaI	CTAG	1 cut(s)	485
BisI	GCNGC	3 cut(s)	192, 475, 478
BlsI	GCNGC	3 cut(s)	193, 476, 479
Bme1390I	CCNGG	1 cut(s)	118
BmrFI	CCNGG	1 cut(s)	118
BmsI	GCATC	1 cut(s)	259
BpiI	GAAGAC	1 cut(s)	67
BsaJI	CCNNGG	2 cut(s)	116, 117
BsaWI	WCCGGW	1 cut(s)	136
BsaXI	ACNNNNNCTCC	2 cut(s)	51, 81
Bse3DI	GCAATG	1 cut(s)	34
BseBI	CCWGG	1 cut(s)	118
BseDI	CCNNGG	2 cut(s)	116, 117
BseGI	GGATG	3 cut(s)	145, 176, 397
BseMI	GCAATG	1 cut(s)	34
BseRI	GAGGAG	1 cut(s)	107
BseXI	GCAGC	3 cut(s)	203, 461, 464
BsiSI	CCGG	1 cut(s)	137
BsmAI	GTCTC	1 cut(s)	42
Bsp143I	GATC	3 cut(s)	142, 205, 466
BspHI	TCATGA	1 cut(s)	364
BspPI	GGATC	1 cut(s)	213
BsrDI	GCAATG	1 cut(s)	34
BssECI	CCNNGG	2 cut(s)	116, 117
BssMI	GATC	3 cut(s)	142, 205, 466
Bst2UI	CCWGG	1 cut(s)	118
Bst4CI	ACNGT	1 cut(s)	531
BstC8I	GCNNGC	1 cut(s)	482
BstDEI	CTNAG	1 cut(s)	44
BstF5I	GGATG	3 cut(s)	145, 176, 397
BstKTI	GATC	3 cut(s)	145, 208, 469
BstMAI	GTCTC	1 cut(s)	42
BstMBI	GATC	3 cut(s)	142, 205, 466
BstNI	CCWGG	1 cut(s)	118
BstSCI	CCNGG	1 cut(s)	116
BstV1I	GCAGC	3 cut(s)	203, 461, 464
BstV2I	GAAGAC	1 cut(s)	67
BtsCI	GGATG	3 cut(s)	145, 176, 397
BtsIMutI	CAGTG	1 cut(s)	233
Cac8I	GCNNGC	1 cut(s)	482
CciI	TCATGA	1 cut(s)	364
Csp6I	GTAC	1 cut(s)	33
CviAII	CATG	5 cut(s)	209, 365, 421, 443, 470
CviJI	RGCY	5 cut(s)	14, 176, 194, 351, 474
CviKI_1	RGCY	5 cut(s)	14, 176, 194, 351, 474
CviQI	GTAC	1 cut(s)	33
DdeI	CTNAG	1 cut(s)	44
DpnI	GATC	3 cut(s)	144, 207, 468
DpnII	GATC	3 cut(s)	142, 205, 466
Eco57I	CTGAAG	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	116
FaeI	CATG	5 cut(s)	212, 368, 424, 446, 473
FatI	CATG	5 cut(s)	208, 364, 420, 442, 469
FbaI	TGATCA	1 cut(s)	466
Fnu4HI	GCNGC	3 cut(s)	192, 475, 478
FokI	GGATG	3 cut(s)	152, 183, 404
Fsp4HI	GCNGC	3 cut(s)	192, 475, 478
FspBI	CTAG	1 cut(s)	485
GluI	GCNGC	3 cut(s)	192, 475, 478
HapII	CCGG	1 cut(s)	137
Hin1II	CATG	5 cut(s)	212, 368, 424, 446, 473
HinfI	GANTC	1 cut(s)	361
HpaII	CCGG	1 cut(s)	137
Hpy166II	GTNNAC	1 cut(s)	299
Hpy188I	TCNGA	3 cut(s)	147, 167, 255
Hpy188III	TCNNGA	1 cut(s)	365
Hpy8I	GTNNAC	1 cut(s)	299
HpyAV	CCTTC	1 cut(s)	283
HpyCH4III	ACNGT	1 cut(s)	531
HpyCH4V	TGCA	2 cut(s)	27, 373
HpyF3I	CTNAG	1 cut(s)	44
Hsp92II	CATG	5 cut(s)	212, 368, 424, 446, 473
Ksp22I	TGATCA	1 cut(s)	466
Kzo9I	GATC	3 cut(s)	142, 205, 466
LmnI	GCTCC	1 cut(s)	101
LpnPI	CCDG	6 cut(s)	37, 97, 103, 130, 150, 509
Lsp1109I	GCAGC	3 cut(s)	203, 461, 464
LweI	GCATC	1 cut(s)	259
MaeI	CTAG	1 cut(s)	485
MaeIII	GTNAC	1 cut(s)	498
MalI	GATC	3 cut(s)	144, 207, 468
MboI	GATC	3 cut(s)	142, 205, 466
MboII	GAAGA	3 cut(s)	67, 160, 510
MluCI	AATT	2 cut(s)	399, 456
MlyI	GAGTC	1 cut(s)	355
MmeI	TCCRAC	1 cut(s)	145
MnlI	CCTC	3 cut(s)	85, 154, 161
MroXI	GAANNNNTTC	1 cut(s)	127
MseI	TTAA	1 cut(s)	243
MspI	CCGG	1 cut(s)	137
MspR9I	CCNGG	1 cut(s)	118
MvaI	CCWGG	1 cut(s)	118
NdeII	GATC	3 cut(s)	142, 205, 466
NlaIII	CATG	5 cut(s)	212, 368, 424, 446, 473
PagI	TCATGA	1 cut(s)	364
PasI	CCCWGGG	1 cut(s)	117
PdmI	GAANNNNTTC	1 cut(s)	127
PkrI	GCNGC	3 cut(s)	193, 476, 479
PleI	GAGTC	1 cut(s)	355
PpsI	GAGTC	1 cut(s)	355
Psp6I	CCWGG	1 cut(s)	116
PspGI	CCWGG	1 cut(s)	116
RsaI	GTAC	1 cut(s)	34
RsaNI	GTAC	1 cut(s)	33
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	3 cut(s)	192, 475, 478
Sau3AI	GATC	3 cut(s)	142, 205, 466
SchI	GAGTC	1 cut(s)	355
ScrFI	CCNGG	1 cut(s)	118
SetI	ASST	4 cut(s)	56, 165, 196, 294
SfaNI	GCATC	1 cut(s)	259
Sse9I	AATT	2 cut(s)	399, 456
SspMI	CTAG	1 cut(s)	485
StyD4I	CCNGG	1 cut(s)	116
TaaI	ACNGT	1 cut(s)	531
TaqI	TCGA	1 cut(s)	359
TasI	AATT	2 cut(s)	399, 456
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TscAI	CASTG	1 cut(s)	240
TseI	GCWGC	3 cut(s)	191, 474, 477
TspDTI	ATGAA	1 cut(s)	329
TspRI	CASTG	1 cut(s)	240
XmnI	GAANNNNTTC	1 cut(s)	127
XspI	CTAG	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.