Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0003961

Physical Location & Seq

Genomic Coordinates Forward (+)

26614599 .. 26627488

Gene Structure 12890 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG127400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGAAAGGTTTGAGGAAACTTTCAGATCTTACAAAACTATGGTGGGATAGCGAAATTGGGGAAATCGAAAGATTGTTCTCATCCCCTCACACACTTTGGCGACCCAAACTCCAGAGCCTACCTCTTGATCCATCGGCTCTAATTTTGCTCAAATCCCACTCTCTATCTTTGCCTCCCAAATCCCCAACCTCTCAAAACAAAGCTCTCACTAAAAATCCCACTCTCTCTGAAGATCGTGCTGATCTCCACCAGCGTGGTGTCCATGTCAGTCGCACTGAAGCTCTTTGTTCCGGTGGCCGCGGACCTCGAGCAAGGGCAAGGGTGAATGGACTATCACTCCTGTTCTTCATGATGTCACTGAGGTGTCAGTTGATCAATCGCAAGAACAACAGGAACATAATCAGCATAGGAACATTAGGAATAGCAGCAACAAGTCCTCCAACTTCTCTGTTAATGCTTGGTAGAGATCCCCAAAAGAGTACTCTTCTTATATGGACGAATTCAATACCAGAACACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

172

Amino Acids

19.16

Weight (kDa)

10.71

Isoelectric Point (pI)

48.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003961)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g10910
rosa_chinensis	RchiOBHm_Chr4g0392531 RchiOBHm_Chr4g0410971
rosa_laevigata	RLG00000003960 RLG00000022712 RLG00000029384 RLG00000034084 RLG00000034554
rosa_multiflora	Rmu_sc0002343.1_g000077 Rmu_sc0006432.1_g000008 Rmu_sc0037170.1_g000002
rosa_roxburghii	Rroxscaffold_1G00033090 Rroxscaffold_1G00060150 Rroxscaffold_2G00117630 Rroxscaffold_2G00128320 Rroxscaffold_3G00245960 Rroxscaffold_5G00342110 Rroxscaffold_5G00366850 Rroxscaffold_5G00368690
rosa_samantha	Rh1DG127400 Rh2AG332200 Rh2AG463900 Rh2AG480800 Rh2CG467000 Rh3BG346400 Rh3CG344300 Rh3DG345500 Rh4AG256100 Rh4BG049600 Rh4BG261400 Rh5AG320600 Rh5BG126500 Rh5CG356300 Rh5DG556100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	300
AciI	CCGC	2 cut(s)	298, 300
AclWI	GGATC	2 cut(s)	122, 461
AcoI	YGGCCR	1 cut(s)	295
AcsI	RAATTY	1 cut(s)	499
AcuI	CTGAAG	2 cut(s)	249, 297
AfaI	GTAC	1 cut(s)	481
AgsI	TTSAA	1 cut(s)	504
AleI	CACNNNNGTG	2 cut(s)	252, 361
AluBI	AGCT	2 cut(s)	203, 281
AluI	AGCT	2 cut(s)	203, 281
AlwI	GGATC	2 cut(s)	122, 461
Ama87I	CYCGRG	1 cut(s)	306
AoxI	GGCC	1 cut(s)	295
ApeKI	GCWGC	1 cut(s)	425
ApoI	RAATTY	1 cut(s)	499
AspS9I	GGNCC	1 cut(s)	302
AsuHPI	GGTGA	1 cut(s)	334
AvaI	CYCGRG	1 cut(s)	306
AvaII	GGWCC	1 cut(s)	302
BbvI	GCAGC	1 cut(s)	437
BccI	CCATC	1 cut(s)	139
BclI	TGATCA	1 cut(s)	372
BfaI	CTAG	1 cut(s)	517
BglII	AGATCT	1 cut(s)	25
BisI	GCNGC	2 cut(s)	298, 426
BlsI	GCNGC	2 cut(s)	299, 427
BmcAI	AGTACT	1 cut(s)	481
Bme18I	GGWCC	1 cut(s)	302
BmeT110I	CYCGRG	1 cut(s)	306
BmgT120I	GGNCC	1 cut(s)	302
BplI	GAGNNNNNCTC	2 cut(s)	106, 138
BpmI	CTGGAG	1 cut(s)	95
BsaJI	CCNNGG	1 cut(s)	298
BsaWI	WCCGGW	1 cut(s)	290
BsaXI	ACNNNNNCTCC	6 cut(s)	93, 123, 321, 351, 421, 451
BseDI	CCNNGG	1 cut(s)	298
BseGI	GGATG	1 cut(s)	80
BseMII	CTCAG	1 cut(s)	350
BseXI	GCAGC	1 cut(s)	437
Bsh1236I	CGCG	1 cut(s)	300
BshFI	GGCC	1 cut(s)	297
BsiHKCI	CYCGRG	1 cut(s)	306
BsiSI	CCGG	1 cut(s)	291
BsnI	GGCC	1 cut(s)	297
BsoBI	CYCGRG	1 cut(s)	306
Bsp143I	GATC	6 cut(s)	25, 127, 232, 241, 372, 466
BspACI	CCGC	2 cut(s)	298, 300
BspANI	GGCC	1 cut(s)	297
BspCNI	CTCAG	1 cut(s)	351
BspFNI	CGCG	1 cut(s)	300
BspHI	TCATGA	1 cut(s)	348
BspPI	GGATC	2 cut(s)	122, 461
BssECI	CCNNGG	1 cut(s)	298
BssMI	GATC	6 cut(s)	25, 127, 232, 241, 372, 466
Bst6I	CTCTTC	1 cut(s)	489
BstDEI	CTNAG	1 cut(s)	359
BstDSI	CCRYGG	1 cut(s)	298
BstF5I	GGATG	1 cut(s)	80
BstFNI	CGCG	1 cut(s)	300
BstKTI	GATC	6 cut(s)	28, 130, 235, 244, 375, 469
BstMBI	GATC	6 cut(s)	25, 127, 232, 241, 372, 466
BstUI	CGCG	1 cut(s)	300
BstV1I	GCAGC	1 cut(s)	437
BstX2I	RGATCY	2 cut(s)	25, 466
BstXI	CCANNNNNNTGG	1 cut(s)	254
BstYI	RGATCY	2 cut(s)	25, 466
BsuRI	GGCC	1 cut(s)	297
BtgI	CCRYGG	1 cut(s)	298
BtsCI	GGATG	1 cut(s)	80
BtsIMutI	CAGTG	2 cut(s)	273, 356
CciI	TCATGA	1 cut(s)	348
Cfr13I	GGNCC	1 cut(s)	302
Cfr42I	CCGCGG	1 cut(s)	301
Csp6I	GTAC	1 cut(s)	480
CviAII	CATG	2 cut(s)	263, 349
CviJI	RGCY	5 cut(s)	117, 137, 203, 281, 297
CviKI_1	RGCY	5 cut(s)	117, 137, 203, 281, 297
CviQI	GTAC	1 cut(s)	480
DdeI	CTNAG	1 cut(s)	359
DpnI	GATC	6 cut(s)	27, 129, 234, 243, 374, 468
DpnII	GATC	6 cut(s)	25, 127, 232, 241, 372, 466
EaeI	YGGCCR	1 cut(s)	295
Eam1104I	CTCTTC	1 cut(s)	489
EarI	CTCTTC	1 cut(s)	489
Eco47I	GGWCC	1 cut(s)	302
Eco57I	CTGAAG	2 cut(s)	249, 297
Eco88I	CYCGRG	1 cut(s)	306
EcoRI	GAATTC	1 cut(s)	499
FaeI	CATG	2 cut(s)	266, 352
FaiI	YATR	7 cut(s)	40, 264, 350, 398, 407, 491, 493
FatI	CATG	2 cut(s)	262, 348
FbaI	TGATCA	1 cut(s)	372
Fnu4HI	GCNGC	2 cut(s)	298, 426
FokI	GGATG	1 cut(s)	67
Fsp4HI	GCNGC	2 cut(s)	298, 426
FspBI	CTAG	1 cut(s)	517
GluI	GCNGC	2 cut(s)	298, 426
GsuI	CTGGAG	1 cut(s)	95
HaeIII	GGCC	1 cut(s)	297
HapII	CCGG	1 cut(s)	291
Hin1II	CATG	2 cut(s)	266, 352
HpaII	CCGG	1 cut(s)	291
HphI	GGTGA	1 cut(s)	334
Hpy188I	TCNGA	2 cut(s)	25, 229
Hpy188III	TCNNGA	3 cut(s)	112, 125, 349
HpyF3I	CTNAG	1 cut(s)	359
Hsp92II	CATG	2 cut(s)	266, 352
Ksp22I	TGATCA	1 cut(s)	372
KspI	CCGCGG	1 cut(s)	301
Kzo9I	GATC	6 cut(s)	25, 127, 232, 241, 372, 466
LpnPI	CCDG	5 cut(s)	125, 263, 304, 353, 376
Lsp1109I	GCAGC	1 cut(s)	437
MaeI	CTAG	1 cut(s)	517
MaeIII	GTNAC	1 cut(s)	354
MalI	GATC	6 cut(s)	27, 129, 234, 243, 374, 468
MboI	GATC	6 cut(s)	25, 127, 232, 241, 372, 466
MboII	GAAGA	3 cut(s)	242, 337, 476
MflI	RGATCY	2 cut(s)	25, 466
MluCI	AATT	3 cut(s)	54, 141, 499
MmeI	TCCRAC	1 cut(s)	464
MnlI	CCTC	8 cut(s)	6, 96, 132, 183, 199, 315, 354, 447
MseI	TTAA	1 cut(s)	452
MslI	CAYNNNNRTG	2 cut(s)	252, 361
MspA1I	CMGCKG	1 cut(s)	300
MspI	CCGG	1 cut(s)	291
MvnI	CGCG	1 cut(s)	300
NdeII	GATC	6 cut(s)	25, 127, 232, 241, 372, 466
NlaIII	CATG	2 cut(s)	266, 352
NmuCI	GTSAC	1 cut(s)	354
OliI	CACNNNNGTG	2 cut(s)	252, 361
PaeR7I	CTCGAG	1 cut(s)	306
PagI	TCATGA	1 cut(s)	348
PkrI	GCNGC	2 cut(s)	299, 427
PspPI	GGNCC	1 cut(s)	302
PspXI	VCTCGAGB	1 cut(s)	306
PsuI	RGATCY	2 cut(s)	25, 466
RsaI	GTAC	1 cut(s)	481
RsaNI	GTAC	1 cut(s)	480
RseI	CAYNNNNRTG	2 cut(s)	252, 361
SacII	CCGCGG	1 cut(s)	301
SaqAI	TTAA	1 cut(s)	452
SatI	GCNGC	2 cut(s)	298, 426
Sau3AI	GATC	6 cut(s)	25, 127, 232, 241, 372, 466
Sau96I	GGNCC	1 cut(s)	302
ScaI	AGTACT	1 cut(s)	481
SetI	ASST	7 cut(s)	10, 124, 191, 205, 283, 307, 365
Sfr274I	CTCGAG	1 cut(s)	306
Sfr303I	CCGCGG	1 cut(s)	301
SgrBI	CCGCGG	1 cut(s)	301
SinI	GGWCC	1 cut(s)	302
SlaI	CTCGAG	1 cut(s)	306
SmiMI	CAYNNNNRTG	2 cut(s)	252, 361
SmlI	CTYRAG	1 cut(s)	306
SmoI	CTYRAG	1 cut(s)	306
Sse9I	AATT	3 cut(s)	54, 141, 499
SsiI	CCGC	2 cut(s)	298, 300
SspMI	CTAG	1 cut(s)	517
TaqI	TCGA	2 cut(s)	66, 307
TasI	AATT	3 cut(s)	54, 141, 499
TatI	WGTACW	1 cut(s)	479
TauI	GCSGC	1 cut(s)	300
Tru1I	TTAA	1 cut(s)	452
Tru9I	TTAA	1 cut(s)	452
TscAI	CASTG	2 cut(s)	280, 363
TseFI	GTSAC	1 cut(s)	354
TseI	GCWGC	1 cut(s)	425
Tsp45I	GTSAC	1 cut(s)	354
TspDTI	ATGAA	2 cut(s)	17, 337
TspRI	CASTG	2 cut(s)	280, 363
VpaK11BI	GGWCC	1 cut(s)	302
XapI	RAATTY	1 cut(s)	499
XhoI	CTCGAG	1 cut(s)	306
XspI	CTAG	1 cut(s)	517
ZrmI	AGTACT	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.