Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0003961

Physical Location & Seq

Genomic Coordinates Reverse (-)

10322776 .. 10325096

Gene Structure 2321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022712

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGTCCTACTGCCACTGCCATCTCGAATGCCTCTACCTCTACCTCTCCATGTGCCACGACCTCTTCCTCTTGTCGTAAAATCACCATTGGTTGCAACCTTCAAGGCTGCTTGCCCCTCTCCATTGTGTCTATTGAGTCTTATCTGTTCTATATCTCACGGTTTTGAGAAAGGGTATATGCCACTATTGGCTTTTAATGGTTGTAGTGGTACATATTTCCTAAGAGACAGGTTTGGAGATGTTGTTGGTGTCTTCAAAAGCAGAGATGAGGAGTATGGACCAATAAATAACCTCAGAGGAAAGTATTTGCTACCGGATGATCTAAAGAAAGTGGTGGAGGTCGGAGGAGGGGCTGAAAGGGAAGTGGCAACTTATCTCTTGGATCATGGAATTGCTAACCTAGATAGACACATGGCAAATATGTTGGTTGCCCATGATGGCAAACTAATTCCTATTGATCATGGCTGCTGCTTGCCAACCAATGCTAATTTTGAAGCAGGCTGTAAGTTTGAATGGTTAGAATGGCCGCAGACACAATCCTCATATTCAACTGTTGTTGTTAACTACATCAGAGATCTTGAGAAAGGGGTAGAAAGCAGCCTTACTCCATATGAAATTGGGTACATGATGATGAGGGAGAATGAGCATGACAAATCTTCTCTCGAAAAAACCACCATATTCGTCGCCGCTCCACCTCAAAACGTCACAGTCTCGTGGCATTCCCTAACCAACAAGTACTCGATCTCCAACCACGACCTCGACTCCCGAGGCTTCGTCCTCCATTGTTCCACCGCCGACCTCAATCTCGACCACCTTGACAAGGTCTTCGTCACCGTCGGGTTCCCCAAGCAAGTCCCGGCCAAGATTCGGATTGCCTTGGACCACATTGACTCACTCCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005777 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008289 GO:0009719 GO:0009725 GO:0009737 GO:0009909 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0033993 GO:0035091 GO:0042221 GO:0042579 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0097305 GO:1901700 GO:1902074 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko03320 map03320

Pfam Domains

Protein Families

PI3_PI4_kinase ubiquitin

Protein Analysis

301

Amino Acids

33.37

Weight (kDa)

6.17

Isoelectric Point (pI)

35.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PI3_PI4_kinase	PF00454	127 - 162	7e-08	Phosphatidylinositol 3- and 4-kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003961)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g10910
rosa_chinensis	RchiOBHm_Chr4g0392531 RchiOBHm_Chr4g0410971
rosa_laevigata	RLG00000003960 RLG00000022712 RLG00000029384 RLG00000034084 RLG00000034554
rosa_multiflora	Rmu_sc0002343.1_g000077 Rmu_sc0006432.1_g000008 Rmu_sc0037170.1_g000002
rosa_roxburghii	Rroxscaffold_1G00033090 Rroxscaffold_1G00060150 Rroxscaffold_2G00117630 Rroxscaffold_2G00128320 Rroxscaffold_3G00245960 Rroxscaffold_5G00342110 Rroxscaffold_5G00366850 Rroxscaffold_5G00368690
rosa_samantha	Rh1DG127400 Rh2AG332200 Rh2AG463900 Rh2AG480800 Rh2CG467000 Rh3BG346400 Rh3CG344300 Rh3DG345500 Rh4AG256100 Rh4BG049600 Rh4BG261400 Rh5AG320600 Rh5BG126500 Rh5CG356300 Rh5DG556100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	689
AciI	CCGC	3 cut(s)	527, 687, 792
AclWI	GGATC	1 cut(s)	390
AcoI	YGGCCR	2 cut(s)	524, 858
AfaI	GTAC	3 cut(s)	211, 623, 737
AfiI	CCNNNNNNNGG	2 cut(s)	820, 867
AgsI	TTSAA	5 cut(s)	103, 256, 494, 512, 549
Alw26I	GTCTC	2 cut(s)	219, 715
AlwI	GGATC	1 cut(s)	390
Ama87I	CYCGRG	1 cut(s)	765
AoxI	GGCC	2 cut(s)	524, 858
ApeKI	GCWGC	4 cut(s)	107, 465, 468, 597
ArsI	GACNNNNNNTTYG	2 cut(s)	809, 841
AspS9I	GGNCC	3 cut(s)	4, 278, 880
AsuC2I	CCSGG	1 cut(s)	857
AsuHPI	GGTGA	2 cut(s)	75, 823
AvaI	CYCGRG	1 cut(s)	765
AvaII	GGWCC	3 cut(s)	4, 278, 880
BauI	CACGAG	1 cut(s)	712
BbsI	GAAGAC	2 cut(s)	244, 817
BbvI	GCAGC	4 cut(s)	94, 452, 455, 609
BccI	CCATC	2 cut(s)	28, 431
BclI	TGATCA	1 cut(s)	457
BcnI	CCSGG	1 cut(s)	857
BcoDI	GTCTC	2 cut(s)	219, 715
BfaI	CTAG	1 cut(s)	401
BfmI	CTRYAG	1 cut(s)	899
BglII	AGATCT	1 cut(s)	574
BisI	GCNGC	6 cut(s)	108, 466, 469, 527, 598, 687
BlsI	GCNGC	6 cut(s)	109, 467, 470, 528, 599, 688
BmcAI	AGTACT	1 cut(s)	737
Bme1390I	CCNGG	1 cut(s)	857
Bme18I	GGWCC	3 cut(s)	4, 278, 880
BmeT110I	CYCGRG	1 cut(s)	765
BmgT120I	GGNCC	3 cut(s)	4, 278, 880
BmiI	GGNNCC	1 cut(s)	842
BmrFI	CCNGG	1 cut(s)	857
BpiI	GAAGAC	2 cut(s)	244, 817
BpuEI	CTTGAG	1 cut(s)	599
BpuMI	CCSGG	1 cut(s)	857
BsaJI	CCNNGG	2 cut(s)	766, 876
BsaWI	WCCGGW	1 cut(s)	313
BsaXI	ACNNNNNCTCC	6 cut(s)	228, 258, 728, 746, 758, 776
Bsc4I	CCNNNNNNNGG	2 cut(s)	820, 867
BseDI	CCNNGG	2 cut(s)	766, 876
BseGI	GGATG	1 cut(s)	322
BseLI	CCNNNNNNNGG	2 cut(s)	820, 867
BseMII	CTCAG	1 cut(s)	307
BseRI	GAGGAG	2 cut(s)	284, 360
BseXI	GCAGC	4 cut(s)	94, 452, 455, 609
BshFI	GGCC	2 cut(s)	526, 860
BsiHKCI	CYCGRG	1 cut(s)	765
BsiSI	CCGG	2 cut(s)	314, 857
BslFI	GGGAC	1 cut(s)	839
BslI	CCNNNNNNNGG	2 cut(s)	820, 867
BsmAI	GTCTC	2 cut(s)	219, 715
BsmFI	GGGAC	1 cut(s)	839
BsmI	GAATGC	2 cut(s)	33, 718
BsnI	GGCC	2 cut(s)	526, 860
BsoBI	CYCGRG	1 cut(s)	765
Bsp143I	GATC	5 cut(s)	319, 382, 457, 574, 741
BspACI	CCGC	3 cut(s)	527, 687, 792
BspANI	GGCC	2 cut(s)	526, 860
BspCNI	CTCAG	1 cut(s)	306
BspLI	GGNNCC	1 cut(s)	842
BspPI	GGATC	1 cut(s)	390
BsrBI	CCGCTC	1 cut(s)	689
BssECI	CCNNGG	2 cut(s)	766, 876
BssMI	GATC	5 cut(s)	319, 382, 457, 574, 741
BssSI	CACGAG	1 cut(s)	712
BssT1I	CCWWGG	1 cut(s)	876
Bst2BI	CACGAG	1 cut(s)	712
Bst4CI	ACNGT	4 cut(s)	161, 553, 709, 835
Bst6I	CTCTTC	1 cut(s)	69
BstC8I	GCNNGC	3 cut(s)	112, 473, 499
BstDEI	CTNAG	2 cut(s)	221, 293
BstENI	CCTNNNNNAGG	1 cut(s)	818
BstF5I	GGATG	1 cut(s)	322
BstKTI	GATC	5 cut(s)	322, 385, 460, 577, 744
BstMAI	GTCTC	2 cut(s)	219, 715
BstMBI	GATC	5 cut(s)	319, 382, 457, 574, 741
BstSCI	CCNGG	1 cut(s)	855
BstSFI	CTRYAG	1 cut(s)	899
BstV1I	GCAGC	4 cut(s)	94, 452, 455, 609
BstV2I	GAAGAC	2 cut(s)	244, 817
BstX2I	RGATCY	1 cut(s)	574
BstYI	RGATCY	1 cut(s)	574
BsuRI	GGCC	2 cut(s)	526, 860
BtsCI	GGATG	1 cut(s)	322
BtsI	GCAGTG	1 cut(s)	14
BtsIMutI	CAGTG	1 cut(s)	14
Cac8I	GCNNGC	3 cut(s)	112, 473, 499
Cfr13I	GGNCC	3 cut(s)	4, 278, 880
Csp6I	GTAC	3 cut(s)	210, 622, 736
CviAII	CATG	7 cut(s)	50, 386, 412, 434, 461, 625, 647
CviJI	RGCY	9 cut(s)	107, 191, 353, 465, 501, 526, 600, 771, 860
CviKI_1	RGCY	9 cut(s)	107, 191, 353, 465, 501, 526, 600, 771, 860
CviQI	GTAC	3 cut(s)	210, 622, 736
DdeI	CTNAG	2 cut(s)	221, 293
DpnI	GATC	5 cut(s)	321, 384, 459, 576, 743
DpnII	GATC	5 cut(s)	319, 382, 457, 574, 741
EaeI	YGGCCR	2 cut(s)	524, 858
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Eco130I	CCWWGG	1 cut(s)	876
Eco47I	GGWCC	3 cut(s)	4, 278, 880
Eco88I	CYCGRG	1 cut(s)	765
EcoNI	CCTNNNNNAGG	1 cut(s)	818
EcoT14I	CCWWGG	1 cut(s)	876
ErhI	CCWWGG	1 cut(s)	876
FaeI	CATG	7 cut(s)	53, 389, 415, 437, 464, 628, 650
FaqI	GGGAC	1 cut(s)	839
FatI	CATG	7 cut(s)	49, 385, 411, 433, 460, 624, 646
FauNDI	CATATG	1 cut(s)	610
FbaI	TGATCA	1 cut(s)	457
Fnu4HI	GCNGC	6 cut(s)	108, 466, 469, 527, 598, 687
FokI	GGATG	1 cut(s)	329
Fsp4HI	GCNGC	6 cut(s)	108, 466, 469, 527, 598, 687
FspBI	CTAG	1 cut(s)	401
GluI	GCNGC	6 cut(s)	108, 466, 469, 527, 598, 687
HaeIII	GGCC	2 cut(s)	526, 860
HapII	CCGG	2 cut(s)	314, 857
Hin1II	CATG	7 cut(s)	53, 389, 415, 437, 464, 628, 650
HincII	GTYRAC	1 cut(s)	562
HindII	GTYRAC	1 cut(s)	562
HinfI	GANTC	4 cut(s)	136, 761, 865, 890
HpaI	GTTAAC	1 cut(s)	562
HpaII	CCGG	2 cut(s)	314, 857
HphI	GGTGA	2 cut(s)	75, 823
Hpy166II	GTNNAC	1 cut(s)	562
Hpy188I	TCNGA	4 cut(s)	296, 344, 572, 870
Hpy188III	TCNNGA	5 cut(s)	24, 578, 662, 765, 806
Hpy8I	GTNNAC	1 cut(s)	562
Hpy99I	CGWCG	2 cut(s)	686, 839
HpyAV	CCTTC	1 cut(s)	109
HpyCH4III	ACNGT	4 cut(s)	161, 553, 709, 835
HpyCH4IV	ACGT	1 cut(s)	702
HpyCH4V	TGCA	1 cut(s)	95
HpyF3I	CTNAG	2 cut(s)	221, 293
HpySE526I	ACGT	1 cut(s)	702
Hsp92II	CATG	7 cut(s)	53, 389, 415, 437, 464, 628, 650
Ksp22I	TGATCA	1 cut(s)	457
KspAI	GTTAAC	1 cut(s)	562
Kzo9I	GATC	5 cut(s)	319, 382, 457, 574, 741
LmnI	GCTCC	1 cut(s)	694
LpnPI	CCDG	4 cut(s)	214, 327, 483, 870
Lsp1109I	GCAGC	4 cut(s)	94, 452, 455, 609
MaeI	CTAG	1 cut(s)	401
MaeII	ACGT	1 cut(s)	702
MaeIII	GTNAC	2 cut(s)	703, 829
MalI	GATC	5 cut(s)	321, 384, 459, 576, 743
MbiI	CCGCTC	1 cut(s)	689
MboI	GATC	5 cut(s)	319, 382, 457, 574, 741
MboII	GAAGA	4 cut(s)	56, 244, 648, 817
MflI	RGATCY	1 cut(s)	574
MluCI	AATT	4 cut(s)	390, 447, 487, 615
MlyI	GAGTC	3 cut(s)	145, 755, 884
MmeI	TCCRAC	2 cut(s)	322, 771
MseI	TTAA	2 cut(s)	195, 561
MslI	CAYNNNNRTG	1 cut(s)	629
MspI	CCGG	2 cut(s)	314, 857
MspR9I	CCNGG	1 cut(s)	857
Mva1269I	GAATGC	2 cut(s)	33, 718
NciI	CCSGG	1 cut(s)	857
NdeI	CATATG	1 cut(s)	610
NdeII	GATC	5 cut(s)	319, 382, 457, 574, 741
NlaIII	CATG	7 cut(s)	53, 389, 415, 437, 464, 628, 650
NlaIV	GGNNCC	1 cut(s)	842
NmuCI	GTSAC	2 cut(s)	703, 829
PctI	GAATGC	2 cut(s)	33, 718
PfeI	GAWTC	1 cut(s)	865
PflFI	GACNNNGTC	1 cut(s)	821
PkrI	GCNGC	6 cut(s)	109, 467, 470, 528, 599, 688
PleI	GAGTC	3 cut(s)	144, 755, 884
PpsI	GAGTC	3 cut(s)	144, 755, 884
PspN4I	GGNNCC	1 cut(s)	842
PspPI	GGNCC	3 cut(s)	4, 278, 880
PsuI	RGATCY	1 cut(s)	574
PsyI	GACNNNGTC	1 cut(s)	821
RsaI	GTAC	3 cut(s)	211, 623, 737
RsaNI	GTAC	3 cut(s)	210, 622, 736
RseI	CAYNNNNRTG	1 cut(s)	629
SaqAI	TTAA	2 cut(s)	195, 561
SatI	GCNGC	6 cut(s)	108, 466, 469, 527, 598, 687
Sau3AI	GATC	5 cut(s)	319, 382, 457, 574, 741
Sau96I	GGNCC	3 cut(s)	4, 278, 880
ScaI	AGTACT	1 cut(s)	737
SchI	GAGTC	3 cut(s)	145, 755, 884
ScrFI	CCNGG	1 cut(s)	857
SfcI	CTRYAG	1 cut(s)	899
SinI	GGWCC	3 cut(s)	4, 278, 880
SmiMI	CAYNNNNRTG	1 cut(s)	629
SmlI	CTYRAG	1 cut(s)	578
SmoI	CTYRAG	1 cut(s)	578
Sse9I	AATT	4 cut(s)	390, 447, 487, 615
SsiI	CCGC	3 cut(s)	527, 687, 792
SspMI	CTAG	1 cut(s)	401
StyD4I	CCNGG	1 cut(s)	855
StyI	CCWWGG	1 cut(s)	876
TaaI	ACNGT	4 cut(s)	161, 553, 709, 835
TaiI	ACGT	1 cut(s)	705
TaqI	TCGA	5 cut(s)	25, 663, 740, 759, 807
TasI	AATT	4 cut(s)	390, 447, 487, 615
TatI	WGTACW	1 cut(s)	735
TauI	GCSGC	2 cut(s)	529, 689
TfiI	GAWTC	1 cut(s)	865
Tru1I	TTAA	2 cut(s)	195, 561
Tru9I	TTAA	2 cut(s)	195, 561
TscAI	CASTG	1 cut(s)	21
TseFI	GTSAC	2 cut(s)	703, 829
TseI	GCWGC	4 cut(s)	107, 465, 468, 597
Tsp45I	GTSAC	2 cut(s)	703, 829
TspDTI	ATGAA	1 cut(s)	627
TspRI	CASTG	1 cut(s)	21
Tth111I	GACNNNGTC	1 cut(s)	821
VpaK11BI	GGWCC	3 cut(s)	4, 278, 880
XagI	CCTNNNNNAGG	1 cut(s)	818
XspI	CTAG	1 cut(s)	401
ZrmI	AGTACT	1 cut(s)	737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.