RLG00000034084

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0003961
Physical Location & Seq
Reverse (-)
36474619 .. 36478048
3430 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034084

Sequence Viewer

Length: 774 bp
ATGCAGTTCGGGACACCTGAACTCGATTTTGAGGGGAGGCCTGTTGCAACCTTGTTTACAAAGGCGGCTGGGCTCTGTGTTTTCAATGAGGGCGGTAGTTCAGCTGGCTGCGAGTTTGCTTCTTTTCGACGTGATGGCGGAGTCCCAGCCTATGGTGGTGGTTGTGTTGCAGTTAGGCTGAAGGAGATAGAGGCACGACCCAAACTCCAGAGCCTACCTCTTGATCCATCGGCTCCAATTTCGCTCAAATCCCACGCTCTATCTTTGACTCCCAAATCCCTAACCTCTCAAAACAAAGCTCTCACTAAAAATCCCACTCTCTCTGAAGATCGTGCTGATCTCCACCAGCGTGGTGTCCATGTCTGTCGCACTGAAGCTCTTTGTTCCGGTGGCCGCGGACCTCGAGCAAGGGCAAGGGTGAATGGACTATCACTCATGTTCTTCATGATGTCACTGAGGTGCCAGTTATTTTGGGACACTTTGACATCACATCGCAGAGTAGCAGCATTGAATCCTTTGCTCAAGGATGCTTTTGTTAAGGCTTTTGTTGTCTGCAGGATCAATCGCAAGAACAACAGGAACATAATCAGCATAGGAACATTAGGAACAGCAGCAACAAGTCCTCCAACTGCTCTGCCAATGCTTGGATCCGGGGACGTTCAAGCTGTACTTCGAGGACCGAGCAGGGCTGAGCCTTCGGCCGCTGCCATCCAGCATGTTGGATTTCTTGAAGGTCTCGGGTTTCCATCGGTTGCAATTTACCCAATTGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

258

Amino Acids

27.34

Weight (kDa)

9.82

Isoelectric Point (pI)

38.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 459
AccB7I CCANNNNNTGG 2 cut(s) 152, 644
AccII CGCG 1 cut(s) 396
AciI CCGC 6 cut(s) 65, 93, 138, 394, 396, 702
AclWI GGATC 4 cut(s) 218, 566, 642, 655
AcoI YGGCCR 2 cut(s) 391, 699
AcuI CTGAAG 3 cut(s) 200, 345, 393
AfaI GTAC 1 cut(s) 669
AfiI CCNNNNNNNGG 2 cut(s) 152, 644
AgsI TTSAA 4 cut(s) 85, 511, 662, 731
AjiI CACGTC 1 cut(s) 131
AleI CACNNNNGTG 2 cut(s) 348, 457
AluBI AGCT 4 cut(s) 104, 299, 377, 665
AluI AGCT 4 cut(s) 104, 299, 377, 665
Alw26I GTCTC 1 cut(s) 740
AlwI GGATC 4 cut(s) 218, 566, 642, 655
Ama87I CYCGRG 2 cut(s) 402, 737
AoxI GGCC 3 cut(s) 38, 391, 699
ApeKI GCWGC 4 cut(s) 108, 503, 611, 704
AspS9I GGNCC 2 cut(s) 398, 677
AsuC2I CCSGG 1 cut(s) 652
AsuHPI GGTGA 1 cut(s) 430
AvaI CYCGRG 2 cut(s) 402, 737
AvaII GGWCC 2 cut(s) 398, 677
BamHI GGATCC 1 cut(s) 647
BanI GGYRCC 1 cut(s) 459
BanII GRGCYC 1 cut(s) 75
BbvI GCAGC 4 cut(s) 95, 515, 623, 691
BccI CCATC 4 cut(s) 128, 235, 716, 754
BcnI CCSGG 1 cut(s) 652
BcoDI GTCTC 1 cut(s) 740
BfmI CTRYAG 1 cut(s) 553
BisI GCNGC 7 cut(s) 66, 109, 394, 504, 612, 702, 705
BlpI GCTNAGC 1 cut(s) 690
BlsI GCNGC 7 cut(s) 67, 110, 395, 505, 613, 703, 706
Bme1390I CCNGG 1 cut(s) 652
Bme18I GGWCC 2 cut(s) 398, 677
BmeT110I CYCGRG 2 cut(s) 402, 737
BmgBI CACGTC 1 cut(s) 131
BmgT120I GGNCC 2 cut(s) 398, 677
BmiI GGNNCC 3 cut(s) 234, 461, 649
BmrFI CCNGG 1 cut(s) 652
BmsI GCATC 1 cut(s) 517
BplI GAGNNNNNCTC 2 cut(s) 202, 234
BpmI CTGGAG 1 cut(s) 191
Bpu1102I GCTNAGC 1 cut(s) 690
BpuEI CTTGAG 1 cut(s) 506
BpuMI CCSGG 1 cut(s) 652
BsaI GGTCTC 1 cut(s) 740
BsaJI CCNNGG 2 cut(s) 394, 651
BsaWI WCCGGW 1 cut(s) 386
BsaXI ACNNNNNCTCC 4 cut(s) 189, 219, 607, 637
Bsc4I CCNNNNNNNGG 2 cut(s) 152, 644
Bse1I ACTGG 1 cut(s) 463
BseDI CCNNGG 2 cut(s) 394, 651
BseGI GGATG 2 cut(s) 532, 708
BseLI CCNNNNNNNGG 2 cut(s) 152, 644
BseMII CTCAG 2 cut(s) 446, 681
BseNI ACTGG 1 cut(s) 463
BseX3I CGGCCG 1 cut(s) 699
BseXI GCAGC 4 cut(s) 95, 515, 623, 691
BseYI CCCAGC 2 cut(s) 68, 145
Bsh1236I CGCG 1 cut(s) 396
Bsh1285I CGRYCG 1 cut(s) 702
BshFI GGCC 3 cut(s) 40, 393, 701
BshNI GGYRCC 1 cut(s) 459
BsiEI CGRYCG 1 cut(s) 702
BsiHKCI CYCGRG 2 cut(s) 402, 737
BsiSI CCGG 2 cut(s) 387, 651
BslFI GGGAC 4 cut(s) 25, 128, 488, 668
BslI CCNNNNNNNGG 2 cut(s) 152, 644
BsmAI GTCTC 1 cut(s) 740
BsmFI GGGAC 4 cut(s) 25, 128, 488, 668
BsnI GGCC 3 cut(s) 40, 393, 701
Bso31I GGTCTC 1 cut(s) 740
BsoBI CYCGRG 2 cut(s) 402, 737
Bsp1286I GDGCHC 1 cut(s) 75
Bsp143I GATC 5 cut(s) 223, 328, 337, 558, 647
Bsp1720I GCTNAGC 1 cut(s) 690
BspACI CCGC 6 cut(s) 65, 93, 138, 394, 396, 702
BspANI GGCC 3 cut(s) 40, 393, 701
BspCNI CTCAG 2 cut(s) 447, 682
BspFNI CGCG 1 cut(s) 396
BspHI TCATGA 1 cut(s) 444
BspLI GGNNCC 3 cut(s) 234, 461, 649
BspMAI CTGCAG 1 cut(s) 557
BspPI GGATC 4 cut(s) 218, 566, 642, 655
BspT107I GGYRCC 1 cut(s) 459
BspTNI GGTCTC 1 cut(s) 740
BsrI ACTGG 1 cut(s) 463
BssECI CCNNGG 2 cut(s) 394, 651
BssMI GATC 5 cut(s) 223, 328, 337, 558, 647
BstC8I GCNNGC 1 cut(s) 106
BstDEI CTNAG 2 cut(s) 455, 690
BstDSI CCRYGG 1 cut(s) 394
BstF5I GGATG 2 cut(s) 532, 708
BstFNI CGCG 1 cut(s) 396
BstKTI GATC 5 cut(s) 226, 331, 340, 561, 650
BstMAI GTCTC 1 cut(s) 740
BstMBI GATC 5 cut(s) 223, 328, 337, 558, 647
BstMCI CGRYCG 1 cut(s) 702
BstNSI RCATGY 1 cut(s) 719
BstSCI CCNGG 1 cut(s) 650
BstSFI CTRYAG 1 cut(s) 553
BstUI CGCG 1 cut(s) 396
BstV1I GCAGC 4 cut(s) 95, 515, 623, 691
BstX2I RGATCY 1 cut(s) 647
BstXI CCANNNNNNTGG 2 cut(s) 350, 719
BstYI RGATCY 1 cut(s) 647
BstZI CGGCCG 1 cut(s) 699
BsuRI GGCC 3 cut(s) 40, 393, 701
BtgI CCRYGG 1 cut(s) 394
BtgZI GCGATG 1 cut(s) 476
BtrI CACGTC 1 cut(s) 131
BtsCI GGATG 2 cut(s) 532, 708
BtsIMutI CAGTG 2 cut(s) 369, 452
Cac8I GCNNGC 1 cut(s) 106
CciI TCATGA 1 cut(s) 444
Cfr13I GGNCC 2 cut(s) 398, 677
Cfr42I CCGCGG 1 cut(s) 397
Csp6I GTAC 1 cut(s) 668
CviAII CATG 4 cut(s) 359, 436, 445, 716
CviQI GTAC 1 cut(s) 668
DdeI CTNAG 2 cut(s) 455, 690
DpnI GATC 5 cut(s) 225, 330, 339, 560, 649
DpnII GATC 5 cut(s) 223, 328, 337, 558, 647
EaeI YGGCCR 2 cut(s) 391, 699
EagI CGGCCG 1 cut(s) 699
EciI GGCGGA 1 cut(s) 153
EclXI CGGCCG 1 cut(s) 699
Eco147I AGGCCT 1 cut(s) 40
Eco24I GRGCYC 1 cut(s) 75
Eco31I GGTCTC 1 cut(s) 740
Eco47I GGWCC 2 cut(s) 398, 677
Eco52I CGGCCG 1 cut(s) 699
Eco57I CTGAAG 3 cut(s) 200, 345, 393
Eco88I CYCGRG 2 cut(s) 402, 737
EcoT38I GRGCYC 1 cut(s) 75
FaeI CATG 4 cut(s) 362, 439, 448, 719
FaiI YATR 7 cut(s) 153, 360, 437, 446, 584, 593, 717
FalI AAGNNNNNCTT 2 cut(s) 654, 686
FaqI GGGAC 4 cut(s) 25, 128, 488, 668
FatI CATG 4 cut(s) 358, 435, 444, 715
Fnu4HI GCNGC 7 cut(s) 66, 109, 394, 504, 612, 702, 705
FokI GGATG 2 cut(s) 539, 695
FriOI GRGCYC 1 cut(s) 75
Fsp4HI GCNGC 7 cut(s) 66, 109, 394, 504, 612, 702, 705
GluI GCNGC 7 cut(s) 66, 109, 394, 504, 612, 702, 705
GsaI CCCAGC 2 cut(s) 72, 149
GsuI CTGGAG 1 cut(s) 191
HaeIII GGCC 3 cut(s) 40, 393, 701
HapII CCGG 2 cut(s) 387, 651
Hin1II CATG 4 cut(s) 362, 439, 448, 719
HinfI GANTC 3 cut(s) 141, 268, 511
HpaII CCGG 2 cut(s) 387, 651
HphI GGTGA 1 cut(s) 430
Hpy166II GTNNAC 1 cut(s) 57
Hpy188I TCNGA 1 cut(s) 325
Hpy188III TCNNGA 5 cut(s) 10, 208, 221, 445, 728
Hpy8I GTNNAC 1 cut(s) 57
Hpy99I CGWCG 1 cut(s) 132
HpyAV CCTTC 3 cut(s) 175, 705, 725
HpyCH4IV ACGT 2 cut(s) 130, 657
HpyCH4V TGCA 5 cut(s) 4, 47, 170, 555, 755
HpyF3I CTNAG 2 cut(s) 455, 690
HpySE526I ACGT 2 cut(s) 130, 657
Hsp92II CATG 4 cut(s) 362, 439, 448, 719
KspI CCGCGG 1 cut(s) 397
Kzo9I GATC 5 cut(s) 223, 328, 337, 558, 647
LmnI GCTCC 1 cut(s) 238
Lsp1109I GCAGC 4 cut(s) 95, 515, 623, 691
LweI GCATC 1 cut(s) 517
MaeII ACGT 2 cut(s) 130, 657
MaeIII GTNAC 1 cut(s) 450
MalI GATC 5 cut(s) 225, 330, 339, 560, 649
MboI GATC 5 cut(s) 223, 328, 337, 558, 647
MboII GAAGA 2 cut(s) 338, 433
MfeI CAATTG 1 cut(s) 765
MflI RGATCY 1 cut(s) 647
MhlI GDGCHC 1 cut(s) 75
MluCI AATT 3 cut(s) 237, 756, 765
MlyI GAGTC 2 cut(s) 150, 262
MmeI TCCRAC 2 cut(s) 650, 700
MseI TTAA 1 cut(s) 537
MslI CAYNNNNRTG 2 cut(s) 348, 457
MspA1I CMGCKG 3 cut(s) 104, 396, 704
MspI CCGG 2 cut(s) 387, 651
MspR9I CCNGG 1 cut(s) 652
MunI CAATTG 1 cut(s) 765
MvnI CGCG 1 cut(s) 396
NciI CCSGG 1 cut(s) 652
NdeII GATC 5 cut(s) 223, 328, 337, 558, 647
NlaIII CATG 4 cut(s) 362, 439, 448, 719
NlaIV GGNNCC 3 cut(s) 234, 461, 649
NmuCI GTSAC 1 cut(s) 450
NspI RCATGY 1 cut(s) 719
OliI CACNNNNGTG 2 cut(s) 348, 457
PaeR7I CTCGAG 1 cut(s) 402
PagI TCATGA 1 cut(s) 444
PceI AGGCCT 1 cut(s) 40
PfeI GAWTC 1 cut(s) 511
PflMI CCANNNNNTGG 2 cut(s) 152, 644
PkrI GCNGC 7 cut(s) 67, 110, 395, 505, 613, 703, 706
PleI GAGTC 2 cut(s) 149, 262
PpsI GAGTC 2 cut(s) 149, 262
PspFI CCCAGC 2 cut(s) 68, 145
PspN4I GGNNCC 3 cut(s) 234, 461, 649
PspPI GGNCC 2 cut(s) 398, 677
PspXI VCTCGAGB 1 cut(s) 402
PstI CTGCAG 1 cut(s) 557
PsuI RGATCY 1 cut(s) 647
PvuII CAGCTG 1 cut(s) 104
RsaI GTAC 1 cut(s) 669
RsaNI GTAC 1 cut(s) 668
RseI CAYNNNNRTG 2 cut(s) 348, 457
SacII CCGCGG 1 cut(s) 397
SaqAI TTAA 1 cut(s) 537
SatI GCNGC 7 cut(s) 66, 109, 394, 504, 612, 702, 705
Sau3AI GATC 5 cut(s) 223, 328, 337, 558, 647
Sau96I GGNCC 2 cut(s) 398, 677
SchI GAGTC 2 cut(s) 150, 262
ScrFI CCNGG 1 cut(s) 652
SduI GDGCHC 1 cut(s) 75
SfaNI GCATC 1 cut(s) 517
SfcI CTRYAG 1 cut(s) 553
Sfr274I CTCGAG 1 cut(s) 402
Sfr303I CCGCGG 1 cut(s) 397
SgrBI CCGCGG 1 cut(s) 397
SinI GGWCC 2 cut(s) 398, 677
SlaI CTCGAG 1 cut(s) 402
SmiMI CAYNNNNRTG 2 cut(s) 348, 457
SmlI CTYRAG 2 cut(s) 402, 521
SmoI CTYRAG 2 cut(s) 402, 521
Sse9I AATT 3 cut(s) 237, 756, 765
SseBI AGGCCT 1 cut(s) 40
SsiI CCGC 6 cut(s) 65, 93, 138, 394, 396, 702
StuI AGGCCT 1 cut(s) 40
StyD4I CCNGG 1 cut(s) 650
TaiI ACGT 2 cut(s) 133, 660
TaqI TCGA 4 cut(s) 24, 127, 403, 673
TaqII GACCGA 1 cut(s) 694
TasI AATT 3 cut(s) 237, 756, 765
TatI WGTACW 1 cut(s) 667
TauI GCSGC 3 cut(s) 68, 396, 704
TfiI GAWTC 1 cut(s) 511
Tru1I TTAA 1 cut(s) 537
Tru9I TTAA 1 cut(s) 537
TscAI CASTG 2 cut(s) 376, 459
TseFI GTSAC 1 cut(s) 450
TseI GCWGC 4 cut(s) 108, 503, 611, 704
Tsp45I GTSAC 1 cut(s) 450
TspDTI ATGAA 1 cut(s) 433
TspRI CASTG 2 cut(s) 376, 459
Van91I CCANNNNNTGG 2 cut(s) 152, 644
VpaK11BI GGWCC 2 cut(s) 398, 677
XceI RCATGY 1 cut(s) 719
XhoI CTCGAG 1 cut(s) 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.