Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003961

Physical Location & Seq

Genomic Coordinates Reverse (-)

37865605 .. 37871402

Gene Structure 5798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029384

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGCCCCGGTTTCCCTTCTACGGGATGATGCTTTTACCTATTTCTTCAGCTTCAAGACACAGAGACTACTACAGGGGAGTCAGAGGGCGAGGTCCATTCAGAGTCCCAACCTAAAAAGCAGCGGAAGTAAAGGCGTTTTGTGTGCTTACTTCCCATATTGTACCCCAAGACCCAAACTCCAGAGCCTACCTCTTGATCCATCGGCTCCAATTTCGCTCAAATCCCACGCCCTATCTTTGCCTCCCAAATCCCCAACCTCTCAAAACAAAGCTCTCGCTAAAAATCCCACTCTCTCTGAAGATCGTGCTGATCTCCACCAGTGTGGTGTCTATGTCTGTCTCACTGAAGCTCTTTGTTCCAGTGGCCGCGGACCTCGAGCAAGATATGCTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

132

Amino Acids

14.26

Weight (kDa)

9.75

Isoelectric Point (pI)

55.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003961)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g10910
rosa_chinensis	RchiOBHm_Chr4g0392531 RchiOBHm_Chr4g0410971
rosa_laevigata	RLG00000003960 RLG00000022712 RLG00000029384 RLG00000034084 RLG00000034554
rosa_multiflora	Rmu_sc0002343.1_g000077 Rmu_sc0006432.1_g000008 Rmu_sc0037170.1_g000002
rosa_roxburghii	Rroxscaffold_1G00033090 Rroxscaffold_1G00060150 Rroxscaffold_2G00117630 Rroxscaffold_2G00128320 Rroxscaffold_3G00245960 Rroxscaffold_5G00342110 Rroxscaffold_5G00366850 Rroxscaffold_5G00368690
rosa_samantha	Rh1DG127400 Rh2AG332200 Rh2AG463900 Rh2AG480800 Rh2CG467000 Rh3BG346400 Rh3CG344300 Rh3DG345500 Rh4AG256100 Rh4BG049600 Rh4BG261400 Rh5AG320600 Rh5BG126500 Rh5CG356300 Rh5DG556100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	369
AciI	CCGC	3 cut(s)	123, 367, 369
AclWI	GGATC	1 cut(s)	191
AcoI	YGGCCR	1 cut(s)	364
AcuI	CTGAAG	3 cut(s)	31, 318, 366
AfaI	GTAC	1 cut(s)	163
AfiI	CCNNNNNNNGG	2 cut(s)	21, 22
AgsI	TTSAA	1 cut(s)	55
AleI	CACNNNNGTG	1 cut(s)	321
AluBI	AGCT	3 cut(s)	51, 272, 350
AluI	AGCT	3 cut(s)	51, 272, 350
Alw26I	GTCTC	2 cut(s)	58, 344
AlwI	GGATC	1 cut(s)	191
Ama87I	CYCGRG	1 cut(s)	375
AoxI	GGCC	2 cut(s)	3, 364
ApeKI	GCWGC	1 cut(s)	120
AspS9I	GGNCC	3 cut(s)	4, 93, 371
AsuC2I	CCSGG	1 cut(s)	8
AvaI	CYCGRG	1 cut(s)	375
AvaII	GGWCC	2 cut(s)	93, 371
BbvI	GCAGC	1 cut(s)	132
BccI	CCATC	1 cut(s)	208
BcnI	CCSGG	1 cut(s)	8
BcoDI	GTCTC	2 cut(s)	58, 344
BfmI	CTRYAG	1 cut(s)	71
BisI	GCNGC	2 cut(s)	121, 367
BlsI	GCNGC	2 cut(s)	122, 368
Bme1390I	CCNGG	1 cut(s)	8
Bme18I	GGWCC	2 cut(s)	93, 371
BmeT110I	CYCGRG	1 cut(s)	375
BmgT120I	GGNCC	3 cut(s)	4, 93, 371
BmiI	GGNNCC	2 cut(s)	6, 207
BmrFI	CCNGG	1 cut(s)	8
BmsI	GCATC	1 cut(s)	19
BplI	GAGNNNNNCTC	2 cut(s)	175, 207
BpmI	CTGGAG	1 cut(s)	164
BpuMI	CCSGG	1 cut(s)	8
BsaJI	CCNNGG	2 cut(s)	6, 367
BsaXI	ACNNNNNCTCC	2 cut(s)	162, 192
Bsc4I	CCNNNNNNNGG	2 cut(s)	21, 22
Bse1I	ACTGG	2 cut(s)	319, 360
BseDI	CCNNGG	2 cut(s)	6, 367
BseGI	GGATG	1 cut(s)	31
BseLI	CCNNNNNNNGG	2 cut(s)	21, 22
BseNI	ACTGG	2 cut(s)	319, 360
BseXI	GCAGC	1 cut(s)	132
Bsh1236I	CGCG	1 cut(s)	369
BshFI	GGCC	2 cut(s)	5, 366
BsiHKCI	CYCGRG	1 cut(s)	375
BsiSI	CCGG	1 cut(s)	8
BslFI	GGGAC	1 cut(s)	90
BslI	CCNNNNNNNGG	2 cut(s)	21, 22
BsmAI	GTCTC	2 cut(s)	58, 344
BsmFI	GGGAC	1 cut(s)	90
BsnI	GGCC	2 cut(s)	5, 366
BsoBI	CYCGRG	1 cut(s)	375
Bsp143I	GATC	3 cut(s)	196, 301, 310
BspACI	CCGC	3 cut(s)	123, 367, 369
BspANI	GGCC	2 cut(s)	5, 366
BspFNI	CGCG	1 cut(s)	369
BspLI	GGNNCC	2 cut(s)	6, 207
BspPI	GGATC	1 cut(s)	191
BsrI	ACTGG	2 cut(s)	319, 360
BssECI	CCNNGG	2 cut(s)	6, 367
BssMI	GATC	3 cut(s)	196, 301, 310
BstAPI	GCANNNNNTGC	1 cut(s)	386
BstDEI	CTNAG	1 cut(s)	393
BstDSI	CCRYGG	1 cut(s)	367
BstF5I	GGATG	1 cut(s)	31
BstFNI	CGCG	1 cut(s)	369
BstKTI	GATC	3 cut(s)	199, 304, 313
BstMAI	GTCTC	2 cut(s)	58, 344
BstMBI	GATC	3 cut(s)	196, 301, 310
BstMWI	GCNNNNNNNGC	1 cut(s)	386
BstSCI	CCNGG	1 cut(s)	6
BstSFI	CTRYAG	1 cut(s)	71
BstUI	CGCG	1 cut(s)	369
BstV1I	GCAGC	1 cut(s)	132
BstXI	CCANNNNNNTGG	1 cut(s)	323
BsuRI	GGCC	2 cut(s)	5, 366
BtgI	CCRYGG	1 cut(s)	367
BtsCI	GGATG	1 cut(s)	31
BtsIMutI	CAGTG	3 cut(s)	326, 342, 367
Cfr13I	GGNCC	3 cut(s)	4, 93, 371
Cfr42I	CCGCGG	1 cut(s)	370
Csp6I	GTAC	1 cut(s)	162
CviJI	RGCY	7 cut(s)	5, 51, 186, 206, 272, 350, 366
CviKI_1	RGCY	7 cut(s)	5, 51, 186, 206, 272, 350, 366
CviQI	GTAC	1 cut(s)	162
DdeI	CTNAG	1 cut(s)	393
DpnI	GATC	3 cut(s)	198, 303, 312
DpnII	GATC	3 cut(s)	196, 301, 310
EaeI	YGGCCR	1 cut(s)	364
Eco47I	GGWCC	2 cut(s)	93, 371
Eco57I	CTGAAG	3 cut(s)	31, 318, 366
Eco88I	CYCGRG	1 cut(s)	375
FaiI	YATR	3 cut(s)	157, 333, 387
FalI	AAGNNNNNCTT	1 cut(s)	373
FaqI	GGGAC	1 cut(s)	90
Fnu4HI	GCNGC	2 cut(s)	121, 367
FokI	GGATG	1 cut(s)	38
Fsp4HI	GCNGC	2 cut(s)	121, 367
GluI	GCNGC	2 cut(s)	121, 367
GsuI	CTGGAG	1 cut(s)	164
HaeIII	GGCC	2 cut(s)	5, 366
HapII	CCGG	1 cut(s)	8
HinfI	GANTC	2 cut(s)	79, 103
HpaII	CCGG	1 cut(s)	8
Hpy188I	TCNGA	3 cut(s)	84, 102, 298
Hpy188III	TCNNGA	3 cut(s)	55, 181, 194
HpyAV	CCTTC	1 cut(s)	26
HpyF10VI	GCNNNNNNNGC	1 cut(s)	386
HpyF3I	CTNAG	1 cut(s)	393
KspI	CCGCGG	1 cut(s)	370
Kzo9I	GATC	3 cut(s)	196, 301, 310
LmnI	GCTCC	1 cut(s)	211
LpnPI	CCDG	5 cut(s)	21, 59, 194, 332, 373
Lsp1109I	GCAGC	1 cut(s)	132
LweI	GCATC	1 cut(s)	19
MalI	GATC	3 cut(s)	198, 303, 312
MboI	GATC	3 cut(s)	196, 301, 310
MboII	GAAGA	2 cut(s)	37, 311
MluCI	AATT	1 cut(s)	210
MlyI	GAGTC	2 cut(s)	88, 112
MnlI	CCTC	6 cut(s)	78, 84, 201, 252, 268, 384
MslI	CAYNNNNRTG	1 cut(s)	321
MspA1I	CMGCKG	2 cut(s)	123, 369
MspI	CCGG	1 cut(s)	8
MspR9I	CCNGG	1 cut(s)	8
MvnI	CGCG	1 cut(s)	369
MwoI	GCNNNNNNNGC	1 cut(s)	386
NciI	CCSGG	1 cut(s)	8
NdeII	GATC	3 cut(s)	196, 301, 310
NlaIV	GGNNCC	2 cut(s)	6, 207
OliI	CACNNNNGTG	1 cut(s)	321
PaeR7I	CTCGAG	1 cut(s)	375
PkrI	GCNGC	2 cut(s)	122, 368
PleI	GAGTC	2 cut(s)	87, 111
PpsI	GAGTC	2 cut(s)	87, 111
PspN4I	GGNNCC	2 cut(s)	6, 207
PspPI	GGNCC	3 cut(s)	4, 93, 371
PspXI	VCTCGAGB	1 cut(s)	375
RsaI	GTAC	1 cut(s)	163
RsaNI	GTAC	1 cut(s)	162
RseI	CAYNNNNRTG	1 cut(s)	321
SacII	CCGCGG	1 cut(s)	370
SatI	GCNGC	2 cut(s)	121, 367
Sau3AI	GATC	3 cut(s)	196, 301, 310
Sau96I	GGNCC	3 cut(s)	4, 93, 371
SchI	GAGTC	2 cut(s)	88, 112
ScrFI	CCNGG	1 cut(s)	8
SetI	ASST	9 cut(s)	41, 53, 95, 114, 193, 260, 274, 352, 376
SfaNI	GCATC	1 cut(s)	19
SfcI	CTRYAG	1 cut(s)	71
Sfr274I	CTCGAG	1 cut(s)	375
Sfr303I	CCGCGG	1 cut(s)	370
SgrBI	CCGCGG	1 cut(s)	370
SinI	GGWCC	2 cut(s)	93, 371
SlaI	CTCGAG	1 cut(s)	375
SmiMI	CAYNNNNRTG	1 cut(s)	321
SmlI	CTYRAG	1 cut(s)	375
SmoI	CTYRAG	1 cut(s)	375
Sse9I	AATT	1 cut(s)	210
SsiI	CCGC	3 cut(s)	123, 367, 369
StyD4I	CCNGG	1 cut(s)	6
TaqI	TCGA	1 cut(s)	376
TasI	AATT	1 cut(s)	210
TauI	GCSGC	1 cut(s)	369
TscAI	CASTG	3 cut(s)	326, 349, 367
TseI	GCWGC	1 cut(s)	120
TspRI	CASTG	3 cut(s)	326, 349, 367
VpaK11BI	GGWCC	2 cut(s)	93, 371
XhoI	CTCGAG	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.