Rroxscaffold_2G00117630

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
47112615 .. 47113499
885 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00117630.1

Sequence Viewer

Length: 171 bp
ATGGAACCACTAACTCTGCAACTATTGGAGCTTCAAACCCAAAGCAACAAACGTAATTTCAAGCCCAGCAACCAACCGAGGAGGGAGGAAGCAACCAAGCAGCCGGGAGTAGTGCCAATATGCCCGTCGGGCAGCCAACCACTCGGTGGGCTCCCACACCGCCTCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

56

Amino Acids

6.23

Weight (kDa)

9.78

Isoelectric Point (pI)

87.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 146
AciI CCGC 1 cut(s) 160
AdeI CACNNNGTG 1 cut(s) 146
AfiI CCNNNNNNNGG 1 cut(s) 146
AgsI TTSAA 2 cut(s) 35, 61
AluBI AGCT 1 cut(s) 31
AluI AGCT 1 cut(s) 31
ApeKI GCWGC 2 cut(s) 100, 132
AsuC2I CCSGG 1 cut(s) 105
BanII GRGCYC 1 cut(s) 153
BbvI GCAGC 2 cut(s) 112, 144
BcnI CCSGG 1 cut(s) 105
BglI GCCNNNNNGGC 1 cut(s) 129
BisI GCNGC 2 cut(s) 101, 133
BlsI GCNGC 2 cut(s) 102, 134
Bme1390I CCNGG 1 cut(s) 105
BmiI GGNNCC 2 cut(s) 6, 152
BmrFI CCNGG 1 cut(s) 105
BpuMI CCSGG 1 cut(s) 105
BsaJI CCNNGG 1 cut(s) 77
Bsc4I CCNNNNNNNGG 1 cut(s) 146
BseDI CCNNGG 1 cut(s) 77
BseLI CCNNNNNNNGG 1 cut(s) 146
BseRI GAGGAG 1 cut(s) 94
BseXI GCAGC 2 cut(s) 112, 144
BseYI CCCAGC 1 cut(s) 65
BsiSI CCGG 1 cut(s) 104
BslI CCNNNNNNNGG 1 cut(s) 146
Bsp1286I GDGCHC 1 cut(s) 153
BspACI CCGC 1 cut(s) 160
BspLI GGNNCC 2 cut(s) 6, 152
BssECI CCNNGG 1 cut(s) 77
BstMWI GCNNNNNNNGC 1 cut(s) 129
BstSCI CCNGG 1 cut(s) 103
BstV1I GCAGC 2 cut(s) 112, 144
CviJI RGCY 5 cut(s) 31, 64, 103, 135, 151
CviKI_1 RGCY 5 cut(s) 31, 64, 103, 135, 151
DraIII CACNNNGTG 1 cut(s) 146
Eco24I GRGCYC 1 cut(s) 153
EcoT38I GRGCYC 1 cut(s) 153
FaiI YATR 1 cut(s) 121
Fnu4HI GCNGC 2 cut(s) 101, 133
FriOI GRGCYC 1 cut(s) 153
Fsp4HI GCNGC 2 cut(s) 101, 133
GluI GCNGC 2 cut(s) 101, 133
GsaI CCCAGC 1 cut(s) 69
HapII CCGG 1 cut(s) 104
HpaII CCGG 1 cut(s) 104
Hpy99I CGWCG 1 cut(s) 130
HpyCH4IV ACGT 1 cut(s) 52
HpyCH4V TGCA 1 cut(s) 19
HpyF10VI GCNNNNNNNGC 1 cut(s) 129
HpySE526I ACGT 1 cut(s) 52
LmnI GCTCC 2 cut(s) 28, 156
LpnPI CCDG 2 cut(s) 79, 117
Lsp1109I GCAGC 2 cut(s) 112, 144
MaeII ACGT 1 cut(s) 52
MhlI GDGCHC 1 cut(s) 153
MluCI AATT 1 cut(s) 55
MnlI CCTC 3 cut(s) 72, 75, 79
MspI CCGG 1 cut(s) 104
MspR9I CCNGG 1 cut(s) 105
MwoI GCNNNNNNNGC 1 cut(s) 129
NciI CCSGG 1 cut(s) 105
NlaIV GGNNCC 2 cut(s) 6, 152
PflMI CCANNNNNTGG 1 cut(s) 146
PkrI GCNGC 2 cut(s) 102, 134
PspFI CCCAGC 1 cut(s) 65
PspN4I GGNNCC 2 cut(s) 6, 152
SatI GCNGC 2 cut(s) 101, 133
ScrFI CCNGG 1 cut(s) 105
SduI GDGCHC 1 cut(s) 153
SetI ASST 2 cut(s) 33, 55
SgeI CNNG 9 cut(s) 73, 78, 90, 109, 116, 117, 136, 141, 155
Sse9I AATT 1 cut(s) 55
SsiI CCGC 1 cut(s) 160
StyD4I CCNGG 1 cut(s) 103
TaiI ACGT 1 cut(s) 55
TasI AATT 1 cut(s) 55
TseI GCWGC 2 cut(s) 100, 132
Van91I CCANNNNNTGG 1 cut(s) 146
XcmI CCANNNNNNNNNTGG 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.