Rh2AG480800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0003961
Physical Location & Seq
Reverse (-)
70039964 .. 70051462
11499 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG480800.1

Sequence Viewer

Length: 465 bp
ATGTATGGCGCAGCAAGTTCTAGTGATTTTGGTTGCGGACAAGGTGGGGCAAGCTCTAGTGATTTTGGTGGCACCAGAAGATATAGGCAGAGGATCATAACGCGCCGCAGAGTATTTCGGTTTGCTGTATATGCTGATCTCCATCGGCGTGGTGGCCATGTCCGTTGCACTGAAGATCTCGGTTCCGCTGGCCGCAGACCTCGAGCAAGGGCAAGGATGAATGGACTATTACTTCTTCATGATGCCACTGCTGTTATTTTCATCAATGCTAATGCAATTATTACAGAGGTTAAAGAAATGGAAGAACTCAGGCAAGGTTACATCATTGTTTGTCTCTCCCAGCTAATTTTTAGCACAATCTCTGGGAAAGTTTGTGGTCCAAATGTAGATACAGACCCCAATCTTCAACATGTCAAGGTCCATTGGCAGCTACACCAAAGACTGGAAACTCTAAGTTCCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

17.19

Weight (kDa)

10.03

Isoelectric Point (pI)

44.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 71
AccB7I CCANNNNNTGG 1 cut(s) 442
AccII CGCG 1 cut(s) 103
AciI CCGC 4 cut(s) 36, 106, 186, 193
AclWI GGATC 1 cut(s) 101
AcoI YGGCCR 2 cut(s) 154, 190
AcuI CTGAAG 1 cut(s) 192
AfiI CCNNNNNNNGG 1 cut(s) 442
AflIII ACRYGT 1 cut(s) 409
AgsI TTSAA 1 cut(s) 407
AluBI AGCT 3 cut(s) 54, 343, 430
AluI AGCT 3 cut(s) 54, 343, 430
Alw26I GTCTC 1 cut(s) 338
AlwI GGATC 1 cut(s) 101
Ama87I CYCGRG 1 cut(s) 201
AoxI GGCC 2 cut(s) 154, 190
ApeKI GCWGC 2 cut(s) 11, 427
AspLEI GCGC 2 cut(s) 11, 105
AspS9I GGNCC 2 cut(s) 377, 418
AvaI CYCGRG 1 cut(s) 201
AvaII GGWCC 2 cut(s) 377, 418
BalI TGGCCA 1 cut(s) 156
BanI GGYRCC 1 cut(s) 71
BbvI GCAGC 2 cut(s) 23, 439
BccI CCATC 1 cut(s) 150
BcoDI GTCTC 1 cut(s) 338
BfaI CTAG 2 cut(s) 21, 57
BglII AGATCT 1 cut(s) 175
BisI GCNGC 4 cut(s) 12, 106, 193, 428
BlsI GCNGC 4 cut(s) 13, 107, 194, 429
Bme18I GGWCC 2 cut(s) 377, 418
BmeT110I CYCGRG 1 cut(s) 201
BmgT120I GGNCC 2 cut(s) 377, 418
BmiI GGNNCC 2 cut(s) 73, 184
BmsI GCATC 1 cut(s) 232
BsaBI GATNNNNATC 1 cut(s) 141
Bsc4I CCNNNNNNNGG 1 cut(s) 442
Bse1I ACTGG 1 cut(s) 447
Bse8I GATNNNNATC 1 cut(s) 141
BseGI GGATG 1 cut(s) 222
BseJI GATNNNNATC 1 cut(s) 141
BseLI CCNNNNNNNGG 1 cut(s) 442
BseMII CTCAG 1 cut(s) 322
BseNI ACTGG 1 cut(s) 447
BseXI GCAGC 2 cut(s) 23, 439
BseYI CCCAGC 1 cut(s) 339
Bsh1236I CGCG 1 cut(s) 103
BshFI GGCC 2 cut(s) 156, 192
BshNI GGYRCC 1 cut(s) 71
BsiHKCI CYCGRG 1 cut(s) 201
BslI CCNNNNNNNGG 1 cut(s) 442
BsmAI GTCTC 1 cut(s) 338
BsnI GGCC 2 cut(s) 156, 192
BsoBI CYCGRG 1 cut(s) 201
Bsp143I GATC 3 cut(s) 93, 136, 175
BspACI CCGC 4 cut(s) 36, 106, 186, 193
BspANI GGCC 2 cut(s) 156, 192
BspCNI CTCAG 1 cut(s) 321
BspFNI CGCG 1 cut(s) 103
BspHI TCATGA 1 cut(s) 238
BspLI GGNNCC 2 cut(s) 73, 184
BspPI GGATC 1 cut(s) 101
BspT107I GGYRCC 1 cut(s) 71
BsrI ACTGG 1 cut(s) 447
BssMI GATC 3 cut(s) 93, 136, 175
BstC8I GCNNGC 2 cut(s) 52, 190
BstDEI CTNAG 2 cut(s) 308, 452
BstF5I GGATG 1 cut(s) 222
BstFNI CGCG 1 cut(s) 103
BstHHI GCGC 2 cut(s) 11, 105
BstKTI GATC 3 cut(s) 96, 139, 178
BstMAI GTCTC 1 cut(s) 338
BstMBI GATC 3 cut(s) 93, 136, 175
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstNSI RCATGY 1 cut(s) 413
BstUI CGCG 1 cut(s) 103
BstV1I GCAGC 2 cut(s) 23, 439
BstX2I RGATCY 1 cut(s) 175
BstXI CCANNNNNNTGG 1 cut(s) 149
BstYI RGATCY 1 cut(s) 175
BsuRI GGCC 2 cut(s) 156, 192
BtsCI GGATG 1 cut(s) 222
BtsI GCAGTG 1 cut(s) 246
BtsIMutI CAGTG 2 cut(s) 168, 246
Cac8I GCNNGC 2 cut(s) 52, 190
CciI TCATGA 1 cut(s) 238
CfoI GCGC 2 cut(s) 11, 105
Cfr13I GGNCC 2 cut(s) 377, 418
CviAII CATG 3 cut(s) 158, 239, 410
CviJI RGCY 5 cut(s) 54, 156, 192, 343, 430
CviKI_1 RGCY 5 cut(s) 54, 156, 192, 343, 430
DdeI CTNAG 2 cut(s) 308, 452
DpnI GATC 3 cut(s) 95, 138, 177
DpnII GATC 3 cut(s) 93, 136, 175
EaeI YGGCCR 2 cut(s) 154, 190
Eco47I GGWCC 2 cut(s) 377, 418
Eco57I CTGAAG 1 cut(s) 192
Eco88I CYCGRG 1 cut(s) 201
FaeI CATG 3 cut(s) 161, 242, 413
FaiI YATR 8 cut(s) 6, 84, 98, 130, 132, 159, 240, 411
FatI CATG 3 cut(s) 157, 238, 409
Fnu4HI GCNGC 4 cut(s) 12, 106, 193, 428
FokI GGATG 1 cut(s) 229
Fsp4HI GCNGC 4 cut(s) 12, 106, 193, 428
FspBI CTAG 2 cut(s) 21, 57
GlaI GCGC 2 cut(s) 10, 104
GluI GCNGC 4 cut(s) 12, 106, 193, 428
GsaI CCCAGC 1 cut(s) 343
HaeIII GGCC 2 cut(s) 156, 192
HhaI GCGC 2 cut(s) 11, 105
Hin1II CATG 3 cut(s) 161, 242, 413
Hin6I GCGC 2 cut(s) 9, 103
HinP1I GCGC 2 cut(s) 9, 103
Hpy188III TCNNGA 1 cut(s) 239
HpyCH4V TGCA 2 cut(s) 168, 275
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 2 cut(s) 308, 452
Hsp92II CATG 3 cut(s) 161, 242, 413
HspAI GCGC 2 cut(s) 9, 103
Kzo9I GATC 3 cut(s) 93, 136, 175
LpnPI CCDG 6 cut(s) 88, 174, 295, 348, 353, 428
Lsp1109I GCAGC 2 cut(s) 23, 439
LweI GCATC 1 cut(s) 232
MaeI CTAG 2 cut(s) 21, 57
MaeIII GTNAC 1 cut(s) 317
MalI GATC 3 cut(s) 95, 138, 177
MboI GATC 3 cut(s) 93, 136, 175
MboII GAAGA 5 cut(s) 90, 185, 227, 314, 395
MflI RGATCY 1 cut(s) 175
MlsI TGGCCA 1 cut(s) 156
MluCI AATT 2 cut(s) 276, 345
MluNI TGGCCA 1 cut(s) 156
MnlI CCTC 3 cut(s) 84, 210, 280
Mox20I TGGCCA 1 cut(s) 156
MscI TGGCCA 1 cut(s) 156
MseI TTAA 1 cut(s) 291
MslI CAYNNNNRTG 1 cut(s) 147
Msp20I TGGCCA 1 cut(s) 156
MspA1I CMGCKG 1 cut(s) 188
MvnI CGCG 1 cut(s) 103
MwoI GCNNNNNNNGC 1 cut(s) 131
NdeII GATC 3 cut(s) 93, 136, 175
NlaIII CATG 3 cut(s) 161, 242, 413
NlaIV GGNNCC 2 cut(s) 73, 184
NspI RCATGY 1 cut(s) 413
PaeR7I CTCGAG 1 cut(s) 201
PagI TCATGA 1 cut(s) 238
PciI ACATGT 1 cut(s) 409
PflMI CCANNNNNTGG 1 cut(s) 442
PkrI GCNGC 4 cut(s) 13, 107, 194, 429
PscI ACATGT 1 cut(s) 409
PspFI CCCAGC 1 cut(s) 339
PspN4I GGNNCC 2 cut(s) 73, 184
PspPI GGNCC 2 cut(s) 377, 418
PspXI VCTCGAGB 1 cut(s) 201
PsuI RGATCY 1 cut(s) 175
RseI CAYNNNNRTG 1 cut(s) 147
SaqAI TTAA 1 cut(s) 291
SatI GCNGC 4 cut(s) 12, 106, 193, 428
Sau3AI GATC 3 cut(s) 93, 136, 175
Sau96I GGNCC 2 cut(s) 377, 418
SetI ASST 8 cut(s) 46, 56, 202, 291, 319, 345, 420, 432
SfaNI GCATC 1 cut(s) 232
Sfr274I CTCGAG 1 cut(s) 201
SinI GGWCC 2 cut(s) 377, 418
SlaI CTCGAG 1 cut(s) 201
SmiMI CAYNNNNRTG 1 cut(s) 147
SmlI CTYRAG 1 cut(s) 201
SmoI CTYRAG 1 cut(s) 201
Sse9I AATT 2 cut(s) 276, 345
SsiI CCGC 4 cut(s) 36, 106, 186, 193
SspMI CTAG 2 cut(s) 21, 57
TaqI TCGA 1 cut(s) 202
TasI AATT 2 cut(s) 276, 345
TauI GCSGC 2 cut(s) 108, 195
Tru1I TTAA 1 cut(s) 291
Tru9I TTAA 1 cut(s) 291
TscAI CASTG 2 cut(s) 175, 253
TseI GCWGC 2 cut(s) 11, 427
TspDTI ATGAA 3 cut(s) 227, 233, 250
TspGWI ACGGA 1 cut(s) 152
TspRI CASTG 2 cut(s) 175, 253
Van91I CCANNNNNTGG 1 cut(s) 442
VpaK11BI GGWCC 2 cut(s) 377, 418
XceI RCATGY 1 cut(s) 413
XcmI CCANNNNNNNNNTGG 1 cut(s) 149
XhoI CTCGAG 1 cut(s) 201
XspI CTAG 2 cut(s) 21, 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.