Rroxscaffold_1G00060150

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0003961
Physical Location & Seq
Forward (+)
82286941 .. 82288517
1577 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00060150.1

Sequence Viewer

Length: 363 bp
ATGTCCGTCGCACTGAAGCTCTTTGTTCCGGTGGTCGTGGACCTCAAGCAAGATCAGACGAGTGTTAATATCATGCTTGTCGGCAAGGGTGAATGGACTATCACTCCTGTTCTTCATGATGTCACTGAGGTGCCAGTTATTTTGGGTATGATGTTGCATGAAGACTCTTACTTGATCTTCTGGGTATGGGACACTTTGACATCACATCGCAGAGTAGCAGCATTGAATCCTTTGCTCAAGGATGCTTTTGTTAAGGCTTTTGTTGTCTGCAGGATCAACAGGAACATAATCAGCATAGGAACATTAGGAACAGCAGCAACAAGTCCTCCAACTTCTCTGTTAATGCTTGGGAGTTGTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.15

Weight (kDa)

6.81

Isoelectric Point (pI)

38.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 130
AclWI GGATC 1 cut(s) 281
AcuI CTGAAG 1 cut(s) 35
AgsI TTSAA 1 cut(s) 226
AleI CACNNNNGTG 1 cut(s) 128
AluBI AGCT 1 cut(s) 19
AluI AGCT 1 cut(s) 19
AlwI GGATC 1 cut(s) 281
ApeKI GCWGC 2 cut(s) 218, 314
AspS9I GGNCC 1 cut(s) 40
AsuHPI GGTGA 1 cut(s) 101
AvaII GGWCC 1 cut(s) 40
BanI GGYRCC 1 cut(s) 130
BbsI GAAGAC 1 cut(s) 168
BbvI GCAGC 2 cut(s) 230, 326
BfmI CTRYAG 1 cut(s) 268
BisI GCNGC 2 cut(s) 219, 315
BlsI GCNGC 2 cut(s) 220, 316
Bme18I GGWCC 1 cut(s) 40
BmgT120I GGNCC 1 cut(s) 40
BmiI GGNNCC 1 cut(s) 132
BmsI GCATC 1 cut(s) 232
BpiI GAAGAC 1 cut(s) 168
BpuEI CTTGAG 2 cut(s) 29, 221
BsaWI WCCGGW 1 cut(s) 28
BsaXI ACNNNNNCTCC 4 cut(s) 88, 118, 310, 340
Bse1I ACTGG 1 cut(s) 134
BseGI GGATG 1 cut(s) 247
BseMII CTCAG 1 cut(s) 117
BseNI ACTGG 1 cut(s) 134
BseXI GCAGC 2 cut(s) 230, 326
BshNI GGYRCC 1 cut(s) 130
BsiSI CCGG 1 cut(s) 29
BslFI GGGAC 1 cut(s) 203
BsmFI GGGAC 1 cut(s) 203
Bsp143I GATC 3 cut(s) 52, 174, 273
BspCNI CTCAG 1 cut(s) 118
BspHI TCATGA 1 cut(s) 115
BspLI GGNNCC 1 cut(s) 132
BspMAI CTGCAG 1 cut(s) 272
BspPI GGATC 1 cut(s) 281
BspT107I GGYRCC 1 cut(s) 130
BsrI ACTGG 1 cut(s) 134
BssMI GATC 3 cut(s) 52, 174, 273
BstDEI CTNAG 1 cut(s) 126
BstF5I GGATG 1 cut(s) 247
BstKTI GATC 3 cut(s) 55, 177, 276
BstMBI GATC 3 cut(s) 52, 174, 273
BstSFI CTRYAG 1 cut(s) 268
BstV1I GCAGC 2 cut(s) 230, 326
BstV2I GAAGAC 1 cut(s) 168
BtgZI GCGATG 1 cut(s) 191
BtsCI GGATG 1 cut(s) 247
BtsIMutI CAGTG 2 cut(s) 11, 123
CciI TCATGA 1 cut(s) 115
Cfr13I GGNCC 1 cut(s) 40
CviAII CATG 3 cut(s) 73, 116, 158
CviJI RGCY 3 cut(s) 19, 257, 360
CviKI_1 RGCY 3 cut(s) 19, 257, 360
DdeI CTNAG 1 cut(s) 126
DpnI GATC 3 cut(s) 54, 176, 275
DpnII GATC 3 cut(s) 52, 174, 273
Eco47I GGWCC 1 cut(s) 40
Eco57I CTGAAG 1 cut(s) 35
FaeI CATG 3 cut(s) 76, 119, 161
FaiI YATR 7 cut(s) 74, 117, 149, 159, 187, 287, 296
FaqI GGGAC 1 cut(s) 203
FatI CATG 3 cut(s) 72, 115, 157
Fnu4HI GCNGC 2 cut(s) 219, 315
FokI GGATG 1 cut(s) 254
Fsp4HI GCNGC 2 cut(s) 219, 315
GluI GCNGC 2 cut(s) 219, 315
HapII CCGG 1 cut(s) 29
Hin1II CATG 3 cut(s) 76, 119, 161
HinfI GANTC 2 cut(s) 164, 226
HpaII CCGG 1 cut(s) 29
HphI GGTGA 1 cut(s) 101
Hpy166II GTNNAC 1 cut(s) 40
Hpy188I TCNGA 1 cut(s) 57
Hpy188III TCNNGA 1 cut(s) 116
Hpy8I GTNNAC 1 cut(s) 40
Hpy99I CGWCG 1 cut(s) 11
HpyCH4V TGCA 2 cut(s) 157, 270
HpyF3I CTNAG 1 cut(s) 126
Hsp92II CATG 3 cut(s) 76, 119, 161
Kzo9I GATC 3 cut(s) 52, 174, 273
LpnPI CCDG 6 cut(s) 42, 120, 147, 166, 256, 265
Lsp1109I GCAGC 2 cut(s) 230, 326
LweI GCATC 1 cut(s) 232
MaeIII GTNAC 1 cut(s) 121
MalI GATC 3 cut(s) 54, 176, 275
MboI GATC 3 cut(s) 52, 174, 273
MboII GAAGA 3 cut(s) 104, 169, 173
MlyI GAGTC 1 cut(s) 158
MmeI TCCRAC 1 cut(s) 353
MnlI CCTC 3 cut(s) 53, 121, 336
MseI TTAA 3 cut(s) 66, 252, 341
MslI CAYNNNNRTG 1 cut(s) 128
MspI CCGG 1 cut(s) 29
NdeII GATC 3 cut(s) 52, 174, 273
NlaIII CATG 3 cut(s) 76, 119, 161
NlaIV GGNNCC 1 cut(s) 132
NmuCI GTSAC 1 cut(s) 121
OliI CACNNNNGTG 1 cut(s) 128
PagI TCATGA 1 cut(s) 115
PfeI GAWTC 1 cut(s) 226
PkrI GCNGC 2 cut(s) 220, 316
PleI GAGTC 1 cut(s) 158
PpsI GAGTC 1 cut(s) 158
PspN4I GGNNCC 1 cut(s) 132
PspPI GGNCC 1 cut(s) 40
PstI CTGCAG 1 cut(s) 272
RseI CAYNNNNRTG 1 cut(s) 128
SaqAI TTAA 3 cut(s) 66, 252, 341
SatI GCNGC 2 cut(s) 219, 315
Sau3AI GATC 3 cut(s) 52, 174, 273
Sau96I GGNCC 1 cut(s) 40
SchI GAGTC 1 cut(s) 158
SetI ASST 3 cut(s) 21, 45, 132
SfaNI GCATC 1 cut(s) 232
SfcI CTRYAG 1 cut(s) 268
SinI GGWCC 1 cut(s) 40
SmiMI CAYNNNNRTG 1 cut(s) 128
SmlI CTYRAG 2 cut(s) 44, 236
SmoI CTYRAG 2 cut(s) 44, 236
TfiI GAWTC 1 cut(s) 226
Tru1I TTAA 3 cut(s) 66, 252, 341
Tru9I TTAA 3 cut(s) 66, 252, 341
TscAI CASTG 2 cut(s) 18, 130
TseFI GTSAC 1 cut(s) 121
TseI GCWGC 2 cut(s) 218, 314
Tsp45I GTSAC 1 cut(s) 121
TspDTI ATGAA 2 cut(s) 104, 174
TspRI CASTG 2 cut(s) 18, 130
VpaK11BI GGWCC 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.