Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003961

Physical Location & Seq

Genomic Coordinates Reverse (-)

48800993 .. 48811526

Gene Structure 10534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00366850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGCCGGGTGTTAGGGAGGATCCTTCACCCAAATTCTATGTGTCGGAAGCTAATCTAATGTATATGCAAATTCCTACTTTGGCGGTAGTCGTATCCAAGGCGGTTCAAGGCTCGAGGACCGAAATTCCCTTTCATGTGAGATCAATTCTCTTTCCAACTGCTCCTAGATTCTCAATCTCTACTAATAACTCAATCTCACACGGGATTAGCATAGTTACCTCAAGCCGCTATAAACACCCCCGCAACCAACCGGAGAGGGATGAAGCAACCAATCGGCCGGCGGTAGTGCCAATGCGCACTGTCGGGCGACTGGTACCCGATGGACTCCCACACCGCCTCGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

114

Amino Acids

12.66

Weight (kDa)

10.53

Isoelectric Point (pI)

50.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003961)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g10910
rosa_chinensis	RchiOBHm_Chr4g0392531 RchiOBHm_Chr4g0410971
rosa_laevigata	RLG00000003960 RLG00000022712 RLG00000029384 RLG00000034084 RLG00000034554
rosa_multiflora	Rmu_sc0002343.1_g000077 Rmu_sc0006432.1_g000008 Rmu_sc0037170.1_g000002
rosa_roxburghii	Rroxscaffold_1G00033090 Rroxscaffold_1G00060150 Rroxscaffold_2G00117630 Rroxscaffold_2G00128320 Rroxscaffold_3G00245960 Rroxscaffold_5G00342110 Rroxscaffold_5G00366850 Rroxscaffold_5G00368690
rosa_samantha	Rh1DG127400 Rh2AG332200 Rh2AG463900 Rh2AG480800 Rh2CG467000 Rh3BG346400 Rh3CG344300 Rh3DG345500 Rh4AG256100 Rh4BG049600 Rh4BG261400 Rh5AG320600 Rh5BG126500 Rh5CG356300 Rh5DG556100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	296
Acc65I	GGTACC	1 cut(s)	313
AccB1I	GGYRCC	1 cut(s)	313
AciI	CCGC	6 cut(s)	83, 101, 226, 241, 281, 334
AclWI	GGATC	2 cut(s)	14, 27
AcoI	YGGCCR	1 cut(s)	275
AcsI	RAATTY	3 cut(s)	32, 69, 123
AfaI	GTAC	1 cut(s)	315
AgsI	TTSAA	1 cut(s)	107
AluBI	AGCT	1 cut(s)	50
AluI	AGCT	1 cut(s)	50
AlwI	GGATC	2 cut(s)	14, 27
Ama87I	CYCGRG	1 cut(s)	112
AoxI	GGCC	1 cut(s)	275
ApoI	RAATTY	3 cut(s)	32, 69, 123
Asp718I	GGTACC	1 cut(s)	313
AspLEI	GCGC	1 cut(s)	297
AspS9I	GGNCC	1 cut(s)	117
AsuC2I	CCSGG	1 cut(s)	6
AsuHPI	GGTGA	1 cut(s)	18
AvaI	CYCGRG	1 cut(s)	112
AvaII	GGWCC	1 cut(s)	117
BamHI	GGATCC	1 cut(s)	19
BanI	GGYRCC	1 cut(s)	313
BccI	CCATC	1 cut(s)	314
BciVI	GTATCC	1 cut(s)	103
BcnI	CCSGG	1 cut(s)	6
BfaI	CTAG	1 cut(s)	165
BfuI	GTATCC	1 cut(s)	103
BisI	GCNGC	1 cut(s)	226
BlsI	GCNGC	1 cut(s)	227
Bme1390I	CCNGG	1 cut(s)	6
Bme18I	GGWCC	1 cut(s)	117
BmeT110I	CYCGRG	1 cut(s)	112
BmgT120I	GGNCC	1 cut(s)	117
BmiI	GGNNCC	2 cut(s)	21, 315
BmrFI	CCNGG	1 cut(s)	6
BpuEI	CTTGAG	1 cut(s)	205
BpuMI	CCSGG	1 cut(s)	6
BsaJI	CCNNGG	2 cut(s)	96, 337
BsaWI	WCCGGW	1 cut(s)	250
Bse118I	RCCGGY	1 cut(s)	277
Bse1I	ACTGG	1 cut(s)	315
BseDI	CCNNGG	2 cut(s)	96, 337
BseGI	GGATG	1 cut(s)	265
BseNI	ACTGG	1 cut(s)	315
BseX3I	CGGCCG	1 cut(s)	275
Bsh1285I	CGRYCG	1 cut(s)	278
BshFI	GGCC	1 cut(s)	277
BshNI	GGYRCC	1 cut(s)	313
BsiEI	CGRYCG	1 cut(s)	278
BsiHKCI	CYCGRG	1 cut(s)	112
BsiSI	CCGG	3 cut(s)	5, 251, 278
BsnI	GGCC	1 cut(s)	277
BsoBI	CYCGRG	1 cut(s)	112
Bsp143I	GATC	2 cut(s)	19, 140
BspACI	CCGC	6 cut(s)	83, 101, 226, 241, 281, 334
BspANI	GGCC	1 cut(s)	277
BspLI	GGNNCC	2 cut(s)	21, 315
BspPI	GGATC	2 cut(s)	14, 27
BspT107I	GGYRCC	1 cut(s)	313
BsrFI	RCCGGY	1 cut(s)	277
BsrI	ACTGG	1 cut(s)	315
BssAI	RCCGGY	1 cut(s)	277
BssECI	CCNNGG	2 cut(s)	96, 337
BssMI	GATC	2 cut(s)	19, 140
BssT1I	CCWWGG	1 cut(s)	96
Bst4CI	ACNGT	1 cut(s)	301
BstC8I	GCNNGC	1 cut(s)	279
BstF5I	GGATG	1 cut(s)	265
BstHHI	GCGC	1 cut(s)	297
BstKTI	GATC	2 cut(s)	22, 143
BstMBI	GATC	2 cut(s)	19, 140
BstMCI	CGRYCG	1 cut(s)	278
BstSCI	CCNGG	1 cut(s)	4
BstX2I	RGATCY	1 cut(s)	19
BstYI	RGATCY	1 cut(s)	19
BstZI	CGGCCG	1 cut(s)	275
BsuI	GTATCC	1 cut(s)	103
BsuRI	GGCC	1 cut(s)	277
BtsCI	GGATG	1 cut(s)	265
BtsIMutI	CAGTG	1 cut(s)	297
Cac8I	GCNNGC	1 cut(s)	279
CfoI	GCGC	1 cut(s)	297
Cfr10I	RCCGGY	1 cut(s)	277
Cfr13I	GGNCC	1 cut(s)	117
Csp6I	GTAC	1 cut(s)	314
CviAII	CATG	1 cut(s)	134
CviJI	RGCY	5 cut(s)	50, 111, 225, 277, 342
CviKI_1	RGCY	5 cut(s)	50, 111, 225, 277, 342
CviQI	GTAC	1 cut(s)	314
DpnI	GATC	2 cut(s)	21, 142
DpnII	GATC	2 cut(s)	19, 140
EaeI	YGGCCR	1 cut(s)	275
EagI	CGGCCG	1 cut(s)	275
EclXI	CGGCCG	1 cut(s)	275
Eco130I	CCWWGG	1 cut(s)	96
Eco47I	GGWCC	1 cut(s)	117
Eco52I	CGGCCG	1 cut(s)	275
Eco88I	CYCGRG	1 cut(s)	112
EcoT14I	CCWWGG	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	96
FaeI	CATG	1 cut(s)	137
FaiI	YATR	6 cut(s)	39, 63, 65, 135, 212, 231
FatI	CATG	1 cut(s)	133
FauI	CCCGC	1 cut(s)	248
Fnu4HI	GCNGC	1 cut(s)	226
FokI	GGATG	1 cut(s)	272
Fsp4HI	GCNGC	1 cut(s)	226
FspAI	RTGCGCAY	1 cut(s)	296
FspBI	CTAG	1 cut(s)	165
FspI	TGCGCA	1 cut(s)	296
GlaI	GCGC	1 cut(s)	296
GluI	GCNGC	1 cut(s)	226
HaeIII	GGCC	1 cut(s)	277
HapII	CCGG	3 cut(s)	5, 251, 278
HhaI	GCGC	1 cut(s)	297
Hin1II	CATG	1 cut(s)	137
Hin6I	GCGC	1 cut(s)	295
HinP1I	GCGC	1 cut(s)	295
HinfI	GANTC	2 cut(s)	168, 324
HpaII	CCGG	3 cut(s)	5, 251, 278
HphI	GGTGA	1 cut(s)	18
Hpy188I	TCNGA	1 cut(s)	46
HpyAV	CCTTC	1 cut(s)	33
HpyCH4III	ACNGT	1 cut(s)	301
HpyCH4V	TGCA	1 cut(s)	67
Hsp92II	CATG	1 cut(s)	137
HspAI	GCGC	1 cut(s)	295
KpnI	GGTACC	1 cut(s)	317
KroI	GCCGGC	1 cut(s)	277
KroNI	GCCGGC	1 cut(s)	279
Kzo9I	GATC	2 cut(s)	19, 140
LmnI	GCTCC	1 cut(s)	166
LpnPI	CCDG	4 cut(s)	18, 264, 291, 296
MaeI	CTAG	1 cut(s)	165
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	2 cut(s)	21, 142
MboI	GATC	2 cut(s)	19, 140
MflI	RGATCY	1 cut(s)	19
MluCI	AATT	4 cut(s)	32, 69, 123, 144
MlyI	GAGTC	1 cut(s)	318
MmeI	TCCRAC	2 cut(s)	24, 179
MnlI	CCTC	4 cut(s)	10, 108, 229, 249
MroNI	GCCGGC	1 cut(s)	277
MspI	CCGG	3 cut(s)	5, 251, 278
MspR9I	CCNGG	1 cut(s)	6
NaeI	GCCGGC	1 cut(s)	279
NciI	CCSGG	1 cut(s)	6
NdeII	GATC	2 cut(s)	19, 140
NgoMIV	GCCGGC	1 cut(s)	277
NlaIII	CATG	1 cut(s)	137
NlaIV	GGNNCC	2 cut(s)	21, 315
NmeAIII	GCCGAG	1 cut(s)	318
NsbI	TGCGCA	1 cut(s)	296
PaeR7I	CTCGAG	1 cut(s)	112
PdiI	GCCGGC	1 cut(s)	279
PfeI	GAWTC	1 cut(s)	168
PkrI	GCNGC	1 cut(s)	227
PleI	GAGTC	1 cut(s)	318
PpsI	GAGTC	1 cut(s)	318
PspN4I	GGNNCC	2 cut(s)	21, 315
PspPI	GGNCC	1 cut(s)	117
PspXI	VCTCGAGB	1 cut(s)	112
PsuI	RGATCY	1 cut(s)	19
RsaI	GTAC	1 cut(s)	315
RsaNI	GTAC	1 cut(s)	314
SatI	GCNGC	1 cut(s)	226
Sau3AI	GATC	2 cut(s)	19, 140
Sau96I	GGNCC	1 cut(s)	117
SchI	GAGTC	1 cut(s)	318
ScrFI	CCNGG	1 cut(s)	6
SetI	ASST	2 cut(s)	52, 221
Sfr274I	CTCGAG	1 cut(s)	112
SinI	GGWCC	1 cut(s)	117
SlaI	CTCGAG	1 cut(s)	112
SmlI	CTYRAG	2 cut(s)	112, 220
SmoI	CTYRAG	2 cut(s)	112, 220
Sse9I	AATT	4 cut(s)	32, 69, 123, 144
SsiI	CCGC	6 cut(s)	83, 101, 226, 241, 281, 334
SspMI	CTAG	1 cut(s)	165
StyD4I	CCNGG	1 cut(s)	4
StyI	CCWWGG	1 cut(s)	96
TaaI	ACNGT	1 cut(s)	301
TaqI	TCGA	1 cut(s)	113
TaqII	GACCGA	1 cut(s)	134
TasI	AATT	4 cut(s)	32, 69, 123, 144
TauI	GCSGC	1 cut(s)	228
TfiI	GAWTC	1 cut(s)	168
TscAI	CASTG	1 cut(s)	304
TspDTI	ATGAA	2 cut(s)	122, 276
TspRI	CASTG	1 cut(s)	304
VpaK11BI	GGWCC	1 cut(s)	117
XapI	RAATTY	3 cut(s)	32, 69, 123
XhoI	CTCGAG	1 cut(s)	112
XspI	CTAG	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.