Rroxscaffold_3G00245960
ERF Family

Interferon-related developmental regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0003961
Physical Location & Seq
Forward (+)
39035647 .. 39056547
20901 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00245960.1

Sequence Viewer

Length: 372 bp
ATGCAACAATCACTTAGAGCCCATCTTTTGAAGAAAGTTAACTGTCATTACAAAAATCTACGAACTGAGACTAATGCAGACAAAATCCGCAATGTTGTAAGATATTTTGAGATCTTGAAGTTTTCTAATCAATATCCGATACTCTATTATAACAGCTTGCTGTTTTTGAAGAGGTTTCTAGCTGATGGATTTAAAAAACATATGGAGGTTATCCGTAAGGAAGGGCCGCAGTATCAAAGGAAGGATTGCAGCCTTGGGGAGGAAGACCCAAAGAACCAACCGGGGAGGGAGGAAGCAACCAAGCAGCCGGGAGTAGTGCCAATATGCTCGTCAGCAGCTCGATTTGATGCTAATTTGTATGATTATGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IFRD IFRD_C

Protein Analysis

123

Amino Acids

14.51

Weight (kDa)

9.26

Isoelectric Point (pI)

42.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 150
AciI CCGC 2 cut(s) 88, 227
AfiI CCNNNNNNNGG 1 cut(s) 259
AgsI TTSAA 3 cut(s) 31, 118, 169
AluBI AGCT 3 cut(s) 156, 182, 338
AluI AGCT 3 cut(s) 156, 182, 338
Alw26I GTCTC 1 cut(s) 62
AoxI GGCC 1 cut(s) 224
ApeKI GCWGC 3 cut(s) 249, 304, 335
AspS9I GGNCC 1 cut(s) 224
AsuC2I CCSGG 2 cut(s) 282, 309
BanII GRGCYC 1 cut(s) 22
BbsI GAAGAC 1 cut(s) 270
BbvI GCAGC 3 cut(s) 261, 316, 347
BccI CCATC 2 cut(s) 30, 179
BcnI CCSGG 2 cut(s) 282, 309
BcoDI GTCTC 1 cut(s) 62
BfaI CTAG 1 cut(s) 179
BglII AGATCT 1 cut(s) 111
BisI GCNGC 4 cut(s) 227, 250, 305, 336
BlsI GCNGC 4 cut(s) 228, 251, 306, 337
Bme1390I CCNGG 2 cut(s) 282, 309
BmgT120I GGNCC 1 cut(s) 224
BmrFI CCNGG 2 cut(s) 282, 309
BmsI GCATC 1 cut(s) 337
BpiI GAAGAC 1 cut(s) 270
BpuMI CCSGG 2 cut(s) 282, 309
BsaJI CCNNGG 2 cut(s) 253, 281
Bsc4I CCNNNNNNNGG 1 cut(s) 259
Bse3DI GCAATG 1 cut(s) 97
BseDI CCNNGG 2 cut(s) 253, 281
BseLI CCNNNNNNNGG 1 cut(s) 259
BseMI GCAATG 1 cut(s) 97
BseMII CTCAG 1 cut(s) 57
BseXI GCAGC 3 cut(s) 261, 316, 347
BshFI GGCC 1 cut(s) 226
BsiSI CCGG 2 cut(s) 281, 308
BslI CCNNNNNNNGG 1 cut(s) 259
BsmAI GTCTC 1 cut(s) 62
BsnI GGCC 1 cut(s) 226
Bsp1286I GDGCHC 1 cut(s) 22
Bsp143I GATC 1 cut(s) 111
BspACI CCGC 2 cut(s) 88, 227
BspANI GGCC 1 cut(s) 226
BspCNI CTCAG 1 cut(s) 58
BsrDI GCAATG 1 cut(s) 97
BssECI CCNNGG 2 cut(s) 253, 281
BssMI GATC 1 cut(s) 111
BssT1I CCWWGG 1 cut(s) 253
Bst4CI ACNGT 1 cut(s) 44
Bst6I CTCTTC 1 cut(s) 164
BstC8I GCNNGC 1 cut(s) 158
BstDEI CTNAG 2 cut(s) 14, 66
BstENI CCTNNNNNAGG 1 cut(s) 257
BstKTI GATC 1 cut(s) 114
BstMAI GTCTC 1 cut(s) 62
BstMBI GATC 1 cut(s) 111
BstSCI CCNGG 2 cut(s) 280, 307
BstV1I GCAGC 3 cut(s) 261, 316, 347
BstV2I GAAGAC 1 cut(s) 270
BstX2I RGATCY 1 cut(s) 111
BstYI RGATCY 1 cut(s) 111
BsuRI GGCC 1 cut(s) 226
Cac8I GCNNGC 1 cut(s) 158
Cfr13I GGNCC 1 cut(s) 224
CviJI RGCY 7 cut(s) 20, 156, 182, 226, 252, 307, 338
CviKI_1 RGCY 7 cut(s) 20, 156, 182, 226, 252, 307, 338
DdeI CTNAG 2 cut(s) 14, 66
DpnI GATC 1 cut(s) 113
DpnII GATC 1 cut(s) 111
DraI TTTAAA 1 cut(s) 193
Eam1104I CTCTTC 1 cut(s) 164
EarI CTCTTC 1 cut(s) 164
Eco130I CCWWGG 1 cut(s) 253
Eco24I GRGCYC 1 cut(s) 22
EcoNI CCTNNNNNAGG 1 cut(s) 257
EcoT14I CCWWGG 1 cut(s) 253
EcoT38I GRGCYC 1 cut(s) 22
ErhI CCWWGG 1 cut(s) 253
FaiI YATR 6 cut(s) 150, 201, 203, 325, 360, 366
FauNDI CATATG 1 cut(s) 201
Fnu4HI GCNGC 4 cut(s) 227, 250, 305, 336
FriOI GRGCYC 1 cut(s) 22
Fsp4HI GCNGC 4 cut(s) 227, 250, 305, 336
FspBI CTAG 1 cut(s) 179
GluI GCNGC 4 cut(s) 227, 250, 305, 336
HaeIII GGCC 1 cut(s) 226
HapII CCGG 2 cut(s) 281, 308
HincII GTYRAC 1 cut(s) 40
HindII GTYRAC 1 cut(s) 40
HpaI GTTAAC 1 cut(s) 40
HpaII CCGG 2 cut(s) 281, 308
Hpy166II GTNNAC 1 cut(s) 40
Hpy188I TCNGA 1 cut(s) 138
Hpy188III TCNNGA 1 cut(s) 115
Hpy8I GTNNAC 1 cut(s) 40
HpyAV CCTTC 2 cut(s) 215, 235
HpyCH4III ACNGT 1 cut(s) 44
HpyCH4V TGCA 3 cut(s) 4, 77, 249
HpyF3I CTNAG 2 cut(s) 14, 66
KspAI GTTAAC 1 cut(s) 40
Kzo9I GATC 1 cut(s) 111
LpnPI CCDG 2 cut(s) 294, 321
Lsp1109I GCAGC 3 cut(s) 261, 316, 347
LweI GCATC 1 cut(s) 337
MaeI CTAG 1 cut(s) 179
MalI GATC 1 cut(s) 113
MboI GATC 1 cut(s) 111
MboII GAAGA 3 cut(s) 43, 181, 275
MflI RGATCY 1 cut(s) 111
MhlI GDGCHC 1 cut(s) 22
MluCI AATT 1 cut(s) 352
MnlI CCTC 5 cut(s) 165, 199, 253, 279, 283
MseI TTAA 2 cut(s) 39, 192
MspI CCGG 2 cut(s) 281, 308
MspR9I CCNGG 2 cut(s) 282, 309
NciI CCSGG 2 cut(s) 282, 309
NdeI CATATG 1 cut(s) 201
NdeII GATC 1 cut(s) 111
PkrI GCNGC 4 cut(s) 228, 251, 306, 337
PsiI TTATAA 1 cut(s) 150
PspPI GGNCC 1 cut(s) 224
PsuI RGATCY 1 cut(s) 111
SaqAI TTAA 2 cut(s) 39, 192
SatI GCNGC 4 cut(s) 227, 250, 305, 336
Sau3AI GATC 1 cut(s) 111
Sau96I GGNCC 1 cut(s) 224
ScrFI CCNGG 2 cut(s) 282, 309
SduI GDGCHC 1 cut(s) 22
SetI ASST 5 cut(s) 158, 176, 184, 210, 340
SfaNI GCATC 1 cut(s) 337
Sse9I AATT 1 cut(s) 352
SsiI CCGC 2 cut(s) 88, 227
SspMI CTAG 1 cut(s) 179
StyD4I CCNGG 2 cut(s) 280, 307
StyI CCWWGG 1 cut(s) 253
TaaI ACNGT 1 cut(s) 44
TaqI TCGA 1 cut(s) 340
TasI AATT 1 cut(s) 352
TauI GCSGC 1 cut(s) 229
Tru1I TTAA 2 cut(s) 39, 192
Tru9I TTAA 2 cut(s) 39, 192
TseI GCWGC 3 cut(s) 249, 304, 335
TspGWI ACGGA 1 cut(s) 203
XagI CCTNNNNNAGG 1 cut(s) 257
XspI CTAG 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.