Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003961

Physical Location & Seq

Genomic Coordinates Forward (+)

47548610 .. 47555446

Gene Structure 6837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG320600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGCTTCGAAACACGATCCACTGGAGGAAGCAGTTTAAGATTGATGCTCTTGAGGAGGAAGATCTCAGTGATGAATCAGAAAAAGTGGTGTTTATGCACGGGTATGACAGAGAGGTTATGGAGAGGCCTCTGCTCGAGGCGATGGAGGAGTCATTTGCAGCGGAGATGGTGAAATACACCATCAGAATGGGAGGGGTGGAAAGTGGCCTTACTCCTTATGAAACTGGGTGTATGATGATGAGGGACAATGAGCATGACAAATTGTCTCTCGAAAAGTTGATTGAAGAGGCGCGAGAAGCTCACGGAAATGATGATTCGTTGTTGGATCATGTATTATCCATGATTGATGGTAGGCAGTTTCAAGAGCTAACTAATCATCCTATATTAGTTCTTTCAAGTGTAGTTGGCTTACTGCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0009507 GO:0009536 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

139

Amino Acids

16.1

Weight (kDa)

4.73

Isoelectric Point (pI)

37.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003961)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g10910
rosa_chinensis	RchiOBHm_Chr4g0392531 RchiOBHm_Chr4g0410971
rosa_laevigata	RLG00000003960 RLG00000022712 RLG00000029384 RLG00000034084 RLG00000034554
rosa_multiflora	Rmu_sc0002343.1_g000077 Rmu_sc0006432.1_g000008 Rmu_sc0037170.1_g000002
rosa_roxburghii	Rroxscaffold_1G00033090 Rroxscaffold_1G00060150 Rroxscaffold_2G00117630 Rroxscaffold_2G00128320 Rroxscaffold_3G00245960 Rroxscaffold_5G00342110 Rroxscaffold_5G00366850 Rroxscaffold_5G00368690
rosa_samantha	Rh1DG127400 Rh2AG332200 Rh2AG463900 Rh2AG480800 Rh2CG467000 Rh3BG346400 Rh3CG344300 Rh3DG345500 Rh4AG256100 Rh4BG049600 Rh4BG261400 Rh5AG320600 Rh5BG126500 Rh5CG356300 Rh5DG556100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	292
AciI	CCGC	1 cut(s)	161
AclWI	GGATC	2 cut(s)	10, 333
AgsI	TTSAA	3 cut(s)	284, 362, 396
AhdI	GACNNNNNGTC	1 cut(s)	262
AluBI	AGCT	2 cut(s)	299, 367
AluI	AGCT	2 cut(s)	299, 367
Alw26I	GTCTC	1 cut(s)	270
AlwI	GGATC	2 cut(s)	10, 333
Ama87I	CYCGRG	1 cut(s)	134
AoxI	GGCC	2 cut(s)	125, 205
ApeKI	GCWGC	1 cut(s)	158
AspLEI	GCGC	1 cut(s)	292
AsuHPI	GGTGA	1 cut(s)	181
AsuII	TTCGAA	1 cut(s)	7
AvaI	CYCGRG	1 cut(s)	134
BbvI	GCAGC	1 cut(s)	170
BccI	CCATC	4 cut(s)	136, 160, 188, 341
BcoDI	GTCTC	1 cut(s)	270
BglII	AGATCT	1 cut(s)	61
BisI	GCNGC	1 cut(s)	159
BlsI	GCNGC	1 cut(s)	160
BmeRI	GACNNNNNGTC	1 cut(s)	262
BmeT110I	CYCGRG	1 cut(s)	134
BmrI	ACTGGG	1 cut(s)	234
BmsI	GCATC	1 cut(s)	34
BmuI	ACTGGG	1 cut(s)	234
BpmI	CTGGAG	1 cut(s)	43
Bpu14I	TTCGAA	1 cut(s)	7
BpuEI	CTTGAG	1 cut(s)	71
Bse1I	ACTGG	2 cut(s)	26, 229
BseGI	GGATG	1 cut(s)	376
BseMII	CTCAG	1 cut(s)	79
BseNI	ACTGG	2 cut(s)	26, 229
BseRI	GAGGAG	2 cut(s)	68, 161
BseXI	GCAGC	1 cut(s)	170
Bsh1236I	CGCG	1 cut(s)	292
BshFI	GGCC	2 cut(s)	127, 207
BsiHKCI	CYCGRG	1 cut(s)	134
BslFI	GGGAC	1 cut(s)	257
BsmAI	GTCTC	1 cut(s)	270
BsmFI	GGGAC	1 cut(s)	257
BsnI	GGCC	2 cut(s)	127, 207
BsoBI	CYCGRG	1 cut(s)	134
Bsp119I	TTCGAA	1 cut(s)	7
Bsp143I	GATC	3 cut(s)	15, 61, 325
BspACI	CCGC	1 cut(s)	161
BspANI	GGCC	2 cut(s)	127, 207
BspCNI	CTCAG	1 cut(s)	78
BspFNI	CGCG	1 cut(s)	292
BspPI	GGATC	2 cut(s)	10, 333
BspT104I	TTCGAA	1 cut(s)	7
BsrI	ACTGG	2 cut(s)	26, 229
BssMI	GATC	3 cut(s)	15, 61, 325
Bst6I	CTCTTC	1 cut(s)	279
BstBI	TTCGAA	1 cut(s)	7
BstDEI	CTNAG	1 cut(s)	65
BstF5I	GGATG	1 cut(s)	376
BstFNI	CGCG	1 cut(s)	292
BstHHI	GCGC	1 cut(s)	292
BstKTI	GATC	3 cut(s)	18, 64, 328
BstMAI	GTCTC	1 cut(s)	270
BstMBI	GATC	3 cut(s)	15, 61, 325
BstMWI	GCNNNNNNNGC	1 cut(s)	296
BstUI	CGCG	1 cut(s)	292
BstV1I	GCAGC	1 cut(s)	170
BstX2I	RGATCY	1 cut(s)	61
BstXI	CCANNNNNNTGG	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	61
BsuRI	GGCC	2 cut(s)	127, 207
BtgZI	GCGATG	1 cut(s)	155
BtsCI	GGATG	1 cut(s)	376
BtsIMutI	CAGTG	2 cut(s)	19, 73
CfoI	GCGC	1 cut(s)	292
CviAII	CATG	3 cut(s)	254, 329, 340
CviJI	RGCY	5 cut(s)	127, 207, 299, 367, 408
CviKI_1	RGCY	5 cut(s)	127, 207, 299, 367, 408
DdeI	CTNAG	1 cut(s)	65
DpnI	GATC	3 cut(s)	17, 63, 327
DpnII	GATC	3 cut(s)	15, 61, 325
DriI	GACNNNNNGTC	1 cut(s)	262
Eam1104I	CTCTTC	1 cut(s)	279
Eam1105I	GACNNNNNGTC	1 cut(s)	262
EarI	CTCTTC	1 cut(s)	279
Eco147I	AGGCCT	1 cut(s)	127
Eco88I	CYCGRG	1 cut(s)	134
FaeI	CATG	3 cut(s)	257, 332, 343
FaiI	YATR	9 cut(s)	95, 105, 119, 219, 233, 255, 330, 341, 383
FaqI	GGGAC	1 cut(s)	257
FatI	CATG	3 cut(s)	253, 328, 339
Fnu4HI	GCNGC	1 cut(s)	159
FokI	GGATG	1 cut(s)	363
Fsp4HI	GCNGC	1 cut(s)	159
GlaI	GCGC	1 cut(s)	291
GluI	GCNGC	1 cut(s)	159
GsuI	CTGGAG	1 cut(s)	43
HaeIII	GGCC	2 cut(s)	127, 207
HhaI	GCGC	1 cut(s)	292
Hin1II	CATG	3 cut(s)	257, 332, 343
Hin6I	GCGC	1 cut(s)	290
HinP1I	GCGC	1 cut(s)	290
HinfI	GANTC	3 cut(s)	74, 149, 314
HphI	GGTGA	1 cut(s)	181
Hpy188I	TCNGA	2 cut(s)	79, 185
Hpy188III	TCNNGA	3 cut(s)	50, 269, 362
HpyCH4V	TGCA	2 cut(s)	97, 158
HpyF10VI	GCNNNNNNNGC	1 cut(s)	296
HpyF3I	CTNAG	1 cut(s)	65
Hsp92II	CATG	3 cut(s)	257, 332, 343
HspAI	GCGC	1 cut(s)	290
Kzo9I	GATC	3 cut(s)	15, 61, 325
LpnPI	CCDG	2 cut(s)	7, 210
Lsp1109I	GCAGC	1 cut(s)	170
LweI	GCATC	1 cut(s)	34
MalI	GATC	3 cut(s)	17, 63, 327
MboI	GATC	3 cut(s)	15, 61, 325
MboII	GAAGA	2 cut(s)	71, 296
MflI	RGATCY	1 cut(s)	61
MluCI	AATT	1 cut(s)	260
MlyI	GAGTC	1 cut(s)	158
MmeI	TCCRAC	1 cut(s)	303
MseI	TTAA	1 cut(s)	36
MslI	CAYNNNNRTG	3 cut(s)	102, 185, 306
MspA1I	CMGCKG	1 cut(s)	161
MvnI	CGCG	1 cut(s)	292
MwoI	GCNNNNNNNGC	1 cut(s)	296
NdeII	GATC	3 cut(s)	15, 61, 325
NlaIII	CATG	3 cut(s)	257, 332, 343
NspV	TTCGAA	1 cut(s)	7
PaeR7I	CTCGAG	1 cut(s)	134
PceI	AGGCCT	1 cut(s)	127
PfeI	GAWTC	2 cut(s)	74, 314
PkrI	GCNGC	1 cut(s)	160
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
PspXI	VCTCGAGB	1 cut(s)	134
PsuI	RGATCY	1 cut(s)	61
RseI	CAYNNNNRTG	3 cut(s)	102, 185, 306
SaqAI	TTAA	1 cut(s)	36
SatI	GCNGC	1 cut(s)	159
Sau3AI	GATC	3 cut(s)	15, 61, 325
SchI	GAGTC	1 cut(s)	158
SetI	ASST	3 cut(s)	117, 301, 369
SfaNI	GCATC	1 cut(s)	34
Sfr274I	CTCGAG	1 cut(s)	134
SfuI	TTCGAA	1 cut(s)	7
SlaI	CTCGAG	1 cut(s)	134
SmiMI	CAYNNNNRTG	3 cut(s)	102, 185, 306
SmlI	CTYRAG	2 cut(s)	50, 134
SmoI	CTYRAG	2 cut(s)	50, 134
Sse9I	AATT	1 cut(s)	260
SseBI	AGGCCT	1 cut(s)	127
SsiI	CCGC	1 cut(s)	161
StuI	AGGCCT	1 cut(s)	127
TaqI	TCGA	3 cut(s)	7, 135, 270
TasI	AATT	1 cut(s)	260
TfiI	GAWTC	2 cut(s)	74, 314
Tru1I	TTAA	1 cut(s)	36
Tru9I	TTAA	1 cut(s)	36
TscAI	CASTG	2 cut(s)	26, 73
TseI	GCWGC	1 cut(s)	158
TspDTI	ATGAA	2 cut(s)	87, 234
TspGWI	ACGGA	1 cut(s)	318
TspRI	CASTG	2 cut(s)	26, 73
XhoI	CTCGAG	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.