Rroxscaffold_1G00033090

Phosphatidylinositol 4-kinase gamma

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0003961
Physical Location & Seq
Reverse (-)
47637422 .. 47643453
6032 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00033090.1

Sequence Viewer

Length: 342 bp
ATGGAGAAGCCTCTGCTCGAGGCGGTGAAGGAGTCGTTTGCGGCGGAAATGGTGAAAGATCTTGAGGTAGAAAAAGATATCGCATTGTTAAAGGAGAACCAGATTGATCTCATGAAGTCTGAAATCACTCTAAAAATTTGTACGATGCTTTTGAAGAGAGAAGTGGAAAGTGGCCTTACTTCTTATAGGGACAATGAGCATGACAAATCTTCTCTCGAAAAGTTGATTGAAGAGGCGCGAGAAGCTCACGGAAATGATCATTCGTTGTTGGATCATGCATGCCGAGTAGGATTTGTGTTGTTGATTGAATGCGGTGGAGGCTATTTGCGTGTTTTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PI3_PI4_kinase ubiquitin

Protein Analysis

113

Amino Acids

12.83

Weight (kDa)

4.92

Isoelectric Point (pI)

35.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 238
AciI CCGC 4 cut(s) 23, 41, 44, 312
AclWI GGATC 1 cut(s) 279
AcsI RAATTY 1 cut(s) 135
AfaI GTAC 1 cut(s) 142
AgsI TTSAA 3 cut(s) 154, 230, 308
AluBI AGCT 1 cut(s) 245
AluI AGCT 1 cut(s) 245
AlwI GGATC 1 cut(s) 279
Ama87I CYCGRG 1 cut(s) 17
AoxI GGCC 1 cut(s) 172
ApoI RAATTY 1 cut(s) 135
AspLEI GCGC 1 cut(s) 238
AsuHPI GGTGA 2 cut(s) 37, 64
AvaI CYCGRG 1 cut(s) 17
BclI TGATCA 1 cut(s) 256
BglII AGATCT 1 cut(s) 58
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
BmeT110I CYCGRG 1 cut(s) 17
BmsI GCATC 1 cut(s) 135
BpuEI CTTGAG 1 cut(s) 83
Bsh1236I CGCG 1 cut(s) 238
BshFI GGCC 1 cut(s) 174
BsiHKCI CYCGRG 1 cut(s) 17
BslFI GGGAC 1 cut(s) 203
BsmFI GGGAC 1 cut(s) 203
BsmI GAATGC 1 cut(s) 314
BsnI GGCC 1 cut(s) 174
BsoBI CYCGRG 1 cut(s) 17
Bsp143I GATC 4 cut(s) 58, 106, 256, 271
BspACI CCGC 4 cut(s) 23, 41, 44, 312
BspANI GGCC 1 cut(s) 174
BspFNI CGCG 1 cut(s) 238
BspHI TCATGA 1 cut(s) 111
BspPI GGATC 1 cut(s) 279
BssMI GATC 4 cut(s) 58, 106, 256, 271
Bst6I CTCTTC 2 cut(s) 149, 225
BstC8I GCNNGC 1 cut(s) 280
BstFNI CGCG 1 cut(s) 238
BstHHI GCGC 1 cut(s) 238
BstKTI GATC 4 cut(s) 61, 109, 259, 274
BstMBI GATC 4 cut(s) 58, 106, 256, 271
BstMWI GCNNNNNNNGC 2 cut(s) 242, 318
BstNSI RCATGY 1 cut(s) 282
BstUI CGCG 1 cut(s) 238
BstX2I RGATCY 1 cut(s) 58
BstYI RGATCY 1 cut(s) 58
BsuRI GGCC 1 cut(s) 174
Cac8I GCNNGC 1 cut(s) 280
CciI TCATGA 1 cut(s) 111
CfoI GCGC 1 cut(s) 238
Csp6I GTAC 1 cut(s) 141
CviAII CATG 4 cut(s) 112, 200, 275, 279
CviJI RGCY 4 cut(s) 10, 174, 245, 321
CviKI_1 RGCY 4 cut(s) 10, 174, 245, 321
CviQI GTAC 1 cut(s) 141
DpnI GATC 4 cut(s) 60, 108, 258, 273
DpnII GATC 4 cut(s) 58, 106, 256, 271
Eam1104I CTCTTC 2 cut(s) 149, 225
EarI CTCTTC 2 cut(s) 149, 225
EciI GGCGGA 1 cut(s) 59
Eco32I GATATC 1 cut(s) 79
Eco88I CYCGRG 1 cut(s) 17
EcoRV GATATC 1 cut(s) 79
EcoT22I ATGCAT 1 cut(s) 280
FaeI CATG 4 cut(s) 115, 203, 278, 282
FaiI YATR 5 cut(s) 113, 186, 201, 276, 280
FaqI GGGAC 1 cut(s) 203
FatI CATG 4 cut(s) 111, 199, 274, 278
FbaI TGATCA 1 cut(s) 256
Fnu4HI GCNGC 1 cut(s) 42
Fsp4HI GCNGC 1 cut(s) 42
GlaI GCGC 1 cut(s) 237
GluI GCNGC 1 cut(s) 42
HaeIII GGCC 1 cut(s) 174
HhaI GCGC 1 cut(s) 238
Hin1II CATG 4 cut(s) 115, 203, 278, 282
Hin6I GCGC 1 cut(s) 236
HinP1I GCGC 1 cut(s) 236
HinfI GANTC 1 cut(s) 32
HphI GGTGA 2 cut(s) 37, 64
Hpy188I TCNGA 1 cut(s) 121
Hpy188III TCNNGA 3 cut(s) 62, 112, 215
HpyAV CCTTC 1 cut(s) 22
HpyCH4V TGCA 1 cut(s) 278
HpyF10VI GCNNNNNNNGC 2 cut(s) 242, 318
Hsp92II CATG 4 cut(s) 115, 203, 278, 282
HspAI GCGC 1 cut(s) 236
Ksp22I TGATCA 1 cut(s) 256
Kzo9I GATC 4 cut(s) 58, 106, 256, 271
LpnPI CCDG 1 cut(s) 113
LweI GCATC 1 cut(s) 135
MalI GATC 4 cut(s) 60, 108, 258, 273
MboI GATC 4 cut(s) 58, 106, 256, 271
MboII GAAGA 3 cut(s) 166, 201, 242
MflI RGATCY 1 cut(s) 58
MluCI AATT 1 cut(s) 135
MlyI GAGTC 1 cut(s) 41
MmeI TCCRAC 1 cut(s) 249
MnlI CCTC 5 cut(s) 13, 21, 58, 226, 311
Mph1103I ATGCAT 1 cut(s) 280
MseI TTAA 1 cut(s) 89
MslI CAYNNNNRTG 1 cut(s) 252
Mva1269I GAATGC 1 cut(s) 314
MvnI CGCG 1 cut(s) 238
MwoI GCNNNNNNNGC 2 cut(s) 242, 318
NdeII GATC 4 cut(s) 58, 106, 256, 271
NlaIII CATG 4 cut(s) 115, 203, 278, 282
NmeAIII GCCGAG 1 cut(s) 308
NsiI ATGCAT 1 cut(s) 280
NspI RCATGY 1 cut(s) 282
PaeI GCATGC 1 cut(s) 282
PaeR7I CTCGAG 1 cut(s) 17
PagI TCATGA 1 cut(s) 111
PctI GAATGC 1 cut(s) 314
PkrI GCNGC 1 cut(s) 43
PleI GAGTC 1 cut(s) 40
PpsI GAGTC 1 cut(s) 40
PspXI VCTCGAGB 1 cut(s) 17
PsuI RGATCY 1 cut(s) 58
RsaI GTAC 1 cut(s) 142
RsaNI GTAC 1 cut(s) 141
RseI CAYNNNNRTG 1 cut(s) 252
SaqAI TTAA 1 cut(s) 89
SatI GCNGC 1 cut(s) 42
Sau3AI GATC 4 cut(s) 58, 106, 256, 271
SchI GAGTC 1 cut(s) 41
SetI ASST 2 cut(s) 69, 247
SfaNI GCATC 1 cut(s) 135
Sfr274I CTCGAG 1 cut(s) 17
SlaI CTCGAG 1 cut(s) 17
SmiMI CAYNNNNRTG 1 cut(s) 252
SmlI CTYRAG 2 cut(s) 17, 62
SmoI CTYRAG 2 cut(s) 17, 62
SphI GCATGC 1 cut(s) 282
Sse9I AATT 1 cut(s) 135
SsiI CCGC 4 cut(s) 23, 41, 44, 312
TaqI TCGA 2 cut(s) 18, 216
TasI AATT 1 cut(s) 135
TauI GCSGC 1 cut(s) 44
Tru1I TTAA 1 cut(s) 89
Tru9I TTAA 1 cut(s) 89
TspDTI ATGAA 1 cut(s) 128
TspGWI ACGGA 1 cut(s) 264
XapI RAATTY 1 cut(s) 135
XceI RCATGY 1 cut(s) 282
XhoI CTCGAG 1 cut(s) 17
Zsp2I ATGCAT 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.