Rroxscaffold_5G00368690

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0003961
Physical Location & Seq
Reverse (-)
50412215 .. 50418740
6526 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00368690.1

Sequence Viewer

Length: 747 bp
ATGAGAGGAAGAAAACAGCGACGTTTTCCGGTGGATTTATGTTTTGGCCCGTTTGGGAGGGGGAATGAGAAAGGTGCTTTGAGATTTGGAGTGGAAGAGAAAGTGTCAGGCCATTGGGAGTTTGAATTACCCAAACTCCAGAGCCTACCTCTTGATCCATCAGCTCCAATTTCGCTCAAATCCCACGCTCTATCTTTGCCTCCCAAATCCCCAACCTCTCAAAACAAAGCTCTCGCTAAAAATCCCACTCTCTCTGAAGATCGTGCTGGCCTCCACCAGCGTGGTGTCCATGTCGTCGCACTGAAGCTCTTTGTTCCGGTGGCCGTGGACCTCGAGCAAGGTATGCTTCTTAGATCTGGCTTTGCATTGATATTCTATTTTAGATCTGACACTTTGACATCACATCGCAGAGTAGCAGCATTGAATCCTTTGCTCAAGGATGCTTTTGTTAAGGCTTTTGTTGTCTGCAGGATCAATCGCAAGAACAACAGGAACATAATCAGCATAGGAACATTAGGAACAGCAGCAACAAGTCCTCTAACTTCTCTGTTAATGCTTGGAGAGAGAGAGACCGGATTAGAAGTGGACATCCGCACTCGATGCAAAAGCGGCGAACCAAGGTTGCTCGGGCGGTTGTATGGCAATGCGGTTCTTTCCTCGGATGTCATGAACATCCCGAATGACATCACCATCAAGGTCAAGGTCAAGGTGATCAAACTCGAAGGTTCGCACGGAAGTTCAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

248

Amino Acids

27.24

Weight (kDa)

10.22

Isoelectric Point (pI)

35.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 592, 609, 631, 647
AclWI GGATC 2 cut(s) 149, 479
AcoI YGGCCR 1 cut(s) 321
AcuI CTGAAG 2 cut(s) 276, 323
AgsI TTSAA 3 cut(s) 125, 424, 741
AleI CACNNNNGTG 1 cut(s) 279
AluBI AGCT 3 cut(s) 164, 230, 307
AluI AGCT 3 cut(s) 164, 230, 307
Alw26I GTCTC 1 cut(s) 563
AlwI GGATC 2 cut(s) 149, 479
Ama87I CYCGRG 2 cut(s) 332, 626
AoxI GGCC 4 cut(s) 46, 109, 268, 321
ApeKI GCWGC 2 cut(s) 416, 524
AspS9I GGNCC 2 cut(s) 47, 328
AsuHPI GGTGA 2 cut(s) 679, 721
AvaI CYCGRG 2 cut(s) 332, 626
AvaII GGWCC 1 cut(s) 328
BbvI GCAGC 2 cut(s) 428, 536
BccI CCATC 2 cut(s) 166, 698
BceAI ACGGC 1 cut(s) 308
BclI TGATCA 1 cut(s) 711
BcoDI GTCTC 1 cut(s) 563
BfmI CTRYAG 1 cut(s) 466
BglII AGATCT 2 cut(s) 353, 383
BisI GCNGC 3 cut(s) 417, 525, 610
BlsI GCNGC 3 cut(s) 418, 526, 611
Bme18I GGWCC 1 cut(s) 328
BmeT110I CYCGRG 2 cut(s) 332, 626
BmgT120I GGNCC 2 cut(s) 47, 328
BmsI GCATC 2 cut(s) 430, 590
BplI GAGNNNNNCTC 2 cut(s) 133, 165
BpmI CTGGAG 1 cut(s) 122
BpuEI CTTGAG 1 cut(s) 419
BsaI GGTCTC 1 cut(s) 563
BsaJI CCNNGG 3 cut(s) 324, 617, 657
BsaWI WCCGGW 3 cut(s) 28, 316, 572
BsaXI ACNNNNNCTCC 2 cut(s) 120, 150
Bse3DI GCAATG 1 cut(s) 649
BseDI CCNNGG 3 cut(s) 324, 617, 657
BseGI GGATG 4 cut(s) 445, 588, 667, 672
BseMI GCAATG 1 cut(s) 649
BseXI GCAGC 2 cut(s) 428, 536
BshFI GGCC 4 cut(s) 48, 111, 270, 323
BsiHKCI CYCGRG 2 cut(s) 332, 626
BsiSI CCGG 3 cut(s) 29, 317, 573
BsmAI GTCTC 1 cut(s) 563
BsnI GGCC 4 cut(s) 48, 111, 270, 323
Bso31I GGTCTC 1 cut(s) 563
BsoBI CYCGRG 2 cut(s) 332, 626
Bsp143I GATC 6 cut(s) 154, 259, 353, 383, 471, 711
BspACI CCGC 4 cut(s) 592, 609, 631, 647
BspANI GGCC 4 cut(s) 48, 111, 270, 323
BspHI TCATGA 1 cut(s) 666
BspMAI CTGCAG 1 cut(s) 470
BspPI GGATC 2 cut(s) 149, 479
BspTNI GGTCTC 1 cut(s) 563
BsrDI GCAATG 1 cut(s) 649
BssECI CCNNGG 3 cut(s) 324, 617, 657
BssMI GATC 6 cut(s) 154, 259, 353, 383, 471, 711
BssT1I CCWWGG 1 cut(s) 617
Bst6I CTCTTC 1 cut(s) 90
BstAPI GCANNNNNTGC 2 cut(s) 343, 600
BstC8I GCNNGC 1 cut(s) 268
BstDEI CTNAG 1 cut(s) 350
BstDSI CCRYGG 1 cut(s) 324
BstF5I GGATG 4 cut(s) 445, 588, 667, 672
BstKTI GATC 6 cut(s) 157, 262, 356, 386, 474, 714
BstMAI GTCTC 1 cut(s) 563
BstMBI GATC 6 cut(s) 154, 259, 353, 383, 471, 711
BstMWI GCNNNNNNNGC 3 cut(s) 343, 600, 609
BstSFI CTRYAG 1 cut(s) 466
BstV1I GCAGC 2 cut(s) 428, 536
BstX2I RGATCY 2 cut(s) 353, 383
BstXI CCANNNNNNTGG 1 cut(s) 281
BstYI RGATCY 2 cut(s) 353, 383
BsuRI GGCC 4 cut(s) 48, 111, 270, 323
BtgI CCRYGG 1 cut(s) 324
BtgZI GCGATG 1 cut(s) 389
BtsCI GGATG 4 cut(s) 445, 588, 667, 672
BtsIMutI CAGTG 1 cut(s) 299
Cac8I GCNNGC 1 cut(s) 268
CciI TCATGA 1 cut(s) 666
Cfr13I GGNCC 2 cut(s) 47, 328
CviAII CATG 2 cut(s) 290, 667
DdeI CTNAG 1 cut(s) 350
DpnI GATC 6 cut(s) 156, 261, 355, 385, 473, 713
DpnII GATC 6 cut(s) 154, 259, 353, 383, 471, 711
EaeI YGGCCR 1 cut(s) 321
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
Eco130I CCWWGG 1 cut(s) 617
Eco31I GGTCTC 1 cut(s) 563
Eco47I GGWCC 1 cut(s) 328
Eco57I CTGAAG 2 cut(s) 276, 323
Eco88I CYCGRG 2 cut(s) 332, 626
EcoT14I CCWWGG 1 cut(s) 617
ErhI CCWWGG 1 cut(s) 617
FaeI CATG 2 cut(s) 293, 670
FaiI YATR 8 cut(s) 40, 291, 344, 497, 506, 639, 668, 745
FalI AAGNNNNNCTT 2 cut(s) 330, 362
FatI CATG 2 cut(s) 289, 666
FbaI TGATCA 1 cut(s) 711
Fnu4HI GCNGC 3 cut(s) 417, 525, 610
FokI GGATG 4 cut(s) 452, 575, 659, 674
Fsp4HI GCNGC 3 cut(s) 417, 525, 610
GluI GCNGC 3 cut(s) 417, 525, 610
GsuI CTGGAG 1 cut(s) 122
HaeIII GGCC 4 cut(s) 48, 111, 270, 323
HapII CCGG 3 cut(s) 29, 317, 573
Hin1II CATG 2 cut(s) 293, 670
HinfI GANTC 1 cut(s) 424
HpaII CCGG 3 cut(s) 29, 317, 573
HphI GGTGA 2 cut(s) 679, 721
Hpy166II GTNNAC 2 cut(s) 328, 586
Hpy188I TCNGA 3 cut(s) 256, 388, 661
Hpy188III TCNNGA 4 cut(s) 139, 152, 667, 676
Hpy8I GTNNAC 2 cut(s) 328, 586
Hpy99I CGWCG 2 cut(s) 24, 299
HpyAV CCTTC 1 cut(s) 716
HpyCH4IV ACGT 1 cut(s) 22
HpyCH4V TGCA 3 cut(s) 365, 468, 603
HpyF10VI GCNNNNNNNGC 3 cut(s) 343, 600, 609
HpyF3I CTNAG 1 cut(s) 350
HpySE526I ACGT 1 cut(s) 22
Hsp92II CATG 2 cut(s) 293, 670
Ksp22I TGATCA 1 cut(s) 711
Kzo9I GATC 6 cut(s) 154, 259, 353, 383, 471, 711
LmnI GCTCC 1 cut(s) 169
Lsp1109I GCAGC 2 cut(s) 428, 536
LweI GCATC 2 cut(s) 430, 590
MaeII ACGT 1 cut(s) 22
MalI GATC 6 cut(s) 156, 261, 355, 385, 473, 713
MboI GATC 6 cut(s) 154, 259, 353, 383, 471, 711
MboII GAAGA 3 cut(s) 21, 107, 269
MflI RGATCY 2 cut(s) 353, 383
MluCI AATT 2 cut(s) 125, 168
MnlI CCTC 8 cut(s) 51, 159, 210, 226, 281, 341, 546, 667
MseI TTAA 2 cut(s) 450, 551
MslI CAYNNNNRTG 1 cut(s) 279
MspI CCGG 3 cut(s) 29, 317, 573
MwoI GCNNNNNNNGC 3 cut(s) 343, 600, 609
NdeII GATC 6 cut(s) 154, 259, 353, 383, 471, 711
NlaIII CATG 2 cut(s) 293, 670
OliI CACNNNNGTG 1 cut(s) 279
PaeR7I CTCGAG 1 cut(s) 332
PagI TCATGA 1 cut(s) 666
PfeI GAWTC 1 cut(s) 424
PkrI GCNGC 3 cut(s) 418, 526, 611
PspPI GGNCC 2 cut(s) 47, 328
PspXI VCTCGAGB 1 cut(s) 332
PstI CTGCAG 1 cut(s) 470
PsuI RGATCY 2 cut(s) 353, 383
RseI CAYNNNNRTG 1 cut(s) 279
SaqAI TTAA 2 cut(s) 450, 551
SatI GCNGC 3 cut(s) 417, 525, 610
Sau3AI GATC 6 cut(s) 154, 259, 353, 383, 471, 711
Sau96I GGNCC 2 cut(s) 47, 328
SfaNI GCATC 2 cut(s) 430, 590
SfcI CTRYAG 1 cut(s) 466
Sfr274I CTCGAG 1 cut(s) 332
SinI GGWCC 1 cut(s) 328
SlaI CTCGAG 1 cut(s) 332
SmiMI CAYNNNNRTG 1 cut(s) 279
SmlI CTYRAG 2 cut(s) 332, 434
SmoI CTYRAG 2 cut(s) 332, 434
Sse9I AATT 2 cut(s) 125, 168
SsiI CCGC 4 cut(s) 592, 609, 631, 647
StyI CCWWGG 1 cut(s) 617
TaiI ACGT 1 cut(s) 25
TaqI TCGA 3 cut(s) 333, 598, 720
TasI AATT 2 cut(s) 125, 168
TauI GCSGC 1 cut(s) 612
TfiI GAWTC 1 cut(s) 424
Tru1I TTAA 2 cut(s) 450, 551
Tru9I TTAA 2 cut(s) 450, 551
TscAI CASTG 1 cut(s) 306
TseI GCWGC 2 cut(s) 416, 524
TspDTI ATGAA 1 cut(s) 683
TspGWI ACGGA 1 cut(s) 747
TspRI CASTG 1 cut(s) 306
VpaK11BI GGWCC 1 cut(s) 328
XhoI CTCGAG 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.