Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003961

Physical Location & Seq

Genomic Coordinates Reverse (-)

63015510 .. 63025252

Gene Structure 9743 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG467000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGTATGGCGCAGCAAGTTCTAGTGATTTTGGTTGCGGACAAGGTGGGGCAAGCTCTAGTGATTTTGGTGGCACCAGAAGATATAGGCAGAGGATCATAACGCGCCGCAGAGTATTTCGGTTTGCTGTATATGCTGATCTCCATCGGCGTGGTGGCCATGTCCGTTGCACTGAAGATCTCGGTTCCGCTGGCCGCAGACCTCGAGCAAGGGCAAGGATGAATGGACTATTACTTCTTCATGATGCCACTGCTGTTATTTTCATCAATGTAACCTGGGCATTGGCAGCTGCTTCTGGGAAGCAGATTTGCATATGGCTTGGCCGATTCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

110

Amino Acids

12.17

Weight (kDa)

11.51

Isoelectric Point (pI)

48.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003961)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g10910
rosa_chinensis	RchiOBHm_Chr4g0392531 RchiOBHm_Chr4g0410971
rosa_laevigata	RLG00000003960 RLG00000022712 RLG00000029384 RLG00000034084 RLG00000034554
rosa_multiflora	Rmu_sc0002343.1_g000077 Rmu_sc0006432.1_g000008 Rmu_sc0037170.1_g000002
rosa_roxburghii	Rroxscaffold_1G00033090 Rroxscaffold_1G00060150 Rroxscaffold_2G00117630 Rroxscaffold_2G00128320 Rroxscaffold_3G00245960 Rroxscaffold_5G00342110 Rroxscaffold_5G00366850 Rroxscaffold_5G00368690
rosa_samantha	Rh1DG127400 Rh2AG332200 Rh2AG463900 Rh2AG480800 Rh2CG467000 Rh3BG346400 Rh3CG344300 Rh3DG345500 Rh4AG256100 Rh4BG049600 Rh4BG261400 Rh5AG320600 Rh5BG126500 Rh5CG356300 Rh5DG556100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	71
AccII	CGCG	1 cut(s)	103
AciI	CCGC	4 cut(s)	36, 106, 186, 193
AclWI	GGATC	1 cut(s)	101
AcoI	YGGCCR	3 cut(s)	154, 190, 319
AcuI	CTGAAG	1 cut(s)	192
AjnI	CCWGG	1 cut(s)	272
AluBI	AGCT	2 cut(s)	54, 287
AluI	AGCT	2 cut(s)	54, 287
AlwI	GGATC	1 cut(s)	101
Ama87I	CYCGRG	1 cut(s)	201
AoxI	GGCC	3 cut(s)	154, 190, 319
ApeKI	GCWGC	3 cut(s)	11, 284, 287
AspLEI	GCGC	2 cut(s)	11, 105
AvaI	CYCGRG	1 cut(s)	201
BalI	TGGCCA	1 cut(s)	156
BanI	GGYRCC	1 cut(s)	71
BbvI	GCAGC	3 cut(s)	23, 274, 296
BccI	CCATC	1 cut(s)	150
BciT130I	CCWGG	1 cut(s)	274
BfaI	CTAG	2 cut(s)	21, 57
BglII	AGATCT	1 cut(s)	175
BisI	GCNGC	5 cut(s)	12, 106, 193, 285, 288
BlsI	GCNGC	5 cut(s)	13, 107, 194, 286, 289
Bme1390I	CCNGG	1 cut(s)	274
BmeT110I	CYCGRG	1 cut(s)	201
BmiI	GGNNCC	2 cut(s)	73, 184
BmrFI	CCNGG	1 cut(s)	274
BmsI	GCATC	1 cut(s)	232
BsaBI	GATNNNNATC	1 cut(s)	141
BsaJI	CCNNGG	1 cut(s)	273
Bse8I	GATNNNNATC	1 cut(s)	141
BseBI	CCWGG	1 cut(s)	274
BseDI	CCNNGG	1 cut(s)	273
BseGI	GGATG	1 cut(s)	222
BseJI	GATNNNNATC	1 cut(s)	141
BseXI	GCAGC	3 cut(s)	23, 274, 296
Bsh1236I	CGCG	1 cut(s)	103
BshFI	GGCC	3 cut(s)	156, 192, 321
BshNI	GGYRCC	1 cut(s)	71
BsiHKCI	CYCGRG	1 cut(s)	201
BsnI	GGCC	3 cut(s)	156, 192, 321
BsoBI	CYCGRG	1 cut(s)	201
Bsp143I	GATC	3 cut(s)	93, 136, 175
BspACI	CCGC	4 cut(s)	36, 106, 186, 193
BspANI	GGCC	3 cut(s)	156, 192, 321
BspFNI	CGCG	1 cut(s)	103
BspHI	TCATGA	1 cut(s)	238
BspLI	GGNNCC	2 cut(s)	73, 184
BspPI	GGATC	1 cut(s)	101
BspT107I	GGYRCC	1 cut(s)	71
BssECI	CCNNGG	1 cut(s)	273
BssMI	GATC	3 cut(s)	93, 136, 175
Bst2UI	CCWGG	1 cut(s)	274
BstC8I	GCNNGC	2 cut(s)	52, 190
BstF5I	GGATG	1 cut(s)	222
BstFNI	CGCG	1 cut(s)	103
BstHHI	GCGC	2 cut(s)	11, 105
BstKTI	GATC	3 cut(s)	96, 139, 178
BstMBI	GATC	3 cut(s)	93, 136, 175
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 284
BstNI	CCWGG	1 cut(s)	274
BstSCI	CCNGG	1 cut(s)	272
BstUI	CGCG	1 cut(s)	103
BstV1I	GCAGC	3 cut(s)	23, 274, 296
BstX2I	RGATCY	1 cut(s)	175
BstXI	CCANNNNNNTGG	1 cut(s)	149
BstYI	RGATCY	1 cut(s)	175
BsuRI	GGCC	3 cut(s)	156, 192, 321
BtsCI	GGATG	1 cut(s)	222
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	2 cut(s)	168, 246
Cac8I	GCNNGC	2 cut(s)	52, 190
CciI	TCATGA	1 cut(s)	238
CfoI	GCGC	2 cut(s)	11, 105
CviAII	CATG	2 cut(s)	158, 239
CviJI	RGCY	6 cut(s)	54, 156, 192, 287, 316, 321
CviKI_1	RGCY	6 cut(s)	54, 156, 192, 287, 316, 321
DpnI	GATC	3 cut(s)	95, 138, 177
DpnII	GATC	3 cut(s)	93, 136, 175
EaeI	YGGCCR	3 cut(s)	154, 190, 319
Eco57I	CTGAAG	1 cut(s)	192
Eco88I	CYCGRG	1 cut(s)	201
EcoRII	CCWGG	1 cut(s)	272
FaeI	CATG	2 cut(s)	161, 242
FaiI	YATR	9 cut(s)	6, 84, 98, 130, 132, 159, 240, 311, 313
FatI	CATG	2 cut(s)	157, 238
FauNDI	CATATG	1 cut(s)	311
Fnu4HI	GCNGC	5 cut(s)	12, 106, 193, 285, 288
FokI	GGATG	1 cut(s)	229
Fsp4HI	GCNGC	5 cut(s)	12, 106, 193, 285, 288
FspBI	CTAG	2 cut(s)	21, 57
GlaI	GCGC	2 cut(s)	10, 104
GluI	GCNGC	5 cut(s)	12, 106, 193, 285, 288
HaeIII	GGCC	3 cut(s)	156, 192, 321
HhaI	GCGC	2 cut(s)	11, 105
Hin1II	CATG	2 cut(s)	161, 242
Hin6I	GCGC	2 cut(s)	9, 103
HinP1I	GCGC	2 cut(s)	9, 103
HinfI	GANTC	1 cut(s)	324
Hpy188III	TCNNGA	1 cut(s)	239
HpyCH4V	TGCA	2 cut(s)	168, 309
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 284
Hsp92II	CATG	2 cut(s)	161, 242
HspAI	GCGC	2 cut(s)	9, 103
Kzo9I	GATC	3 cut(s)	93, 136, 175
LpnPI	CCDG	5 cut(s)	88, 174, 259, 279, 286
Lsp1109I	GCAGC	3 cut(s)	23, 274, 296
LweI	GCATC	1 cut(s)	232
MaeI	CTAG	2 cut(s)	21, 57
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	3 cut(s)	95, 138, 177
MboI	GATC	3 cut(s)	93, 136, 175
MboII	GAAGA	3 cut(s)	90, 185, 227
MflI	RGATCY	1 cut(s)	175
MlsI	TGGCCA	1 cut(s)	156
MluNI	TGGCCA	1 cut(s)	156
MnlI	CCTC	2 cut(s)	84, 210
Mox20I	TGGCCA	1 cut(s)	156
MscI	TGGCCA	1 cut(s)	156
MslI	CAYNNNNRTG	1 cut(s)	147
Msp20I	TGGCCA	1 cut(s)	156
MspA1I	CMGCKG	2 cut(s)	188, 287
MspR9I	CCNGG	1 cut(s)	274
MvaI	CCWGG	1 cut(s)	274
MvnI	CGCG	1 cut(s)	103
MwoI	GCNNNNNNNGC	2 cut(s)	131, 284
NdeI	CATATG	1 cut(s)	311
NdeII	GATC	3 cut(s)	93, 136, 175
NlaIII	CATG	2 cut(s)	161, 242
NlaIV	GGNNCC	2 cut(s)	73, 184
PaeR7I	CTCGAG	1 cut(s)	201
PagI	TCATGA	1 cut(s)	238
PfeI	GAWTC	1 cut(s)	324
PkrI	GCNGC	5 cut(s)	13, 107, 194, 286, 289
Psp6I	CCWGG	1 cut(s)	272
PspGI	CCWGG	1 cut(s)	272
PspN4I	GGNNCC	2 cut(s)	73, 184
PspXI	VCTCGAGB	1 cut(s)	201
PsuI	RGATCY	1 cut(s)	175
PvuII	CAGCTG	1 cut(s)	287
RseI	CAYNNNNRTG	1 cut(s)	147
SatI	GCNGC	5 cut(s)	12, 106, 193, 285, 288
Sau3AI	GATC	3 cut(s)	93, 136, 175
ScrFI	CCNGG	1 cut(s)	274
SetI	ASST	5 cut(s)	46, 56, 202, 275, 289
SfaNI	GCATC	1 cut(s)	232
Sfr274I	CTCGAG	1 cut(s)	201
SlaI	CTCGAG	1 cut(s)	201
SmiMI	CAYNNNNRTG	1 cut(s)	147
SmlI	CTYRAG	1 cut(s)	201
SmoI	CTYRAG	1 cut(s)	201
SsiI	CCGC	4 cut(s)	36, 106, 186, 193
SspMI	CTAG	2 cut(s)	21, 57
StyD4I	CCNGG	1 cut(s)	272
TaqI	TCGA	1 cut(s)	202
TauI	GCSGC	2 cut(s)	108, 195
TfiI	GAWTC	1 cut(s)	324
TscAI	CASTG	2 cut(s)	175, 253
TseI	GCWGC	3 cut(s)	11, 284, 287
TspDTI	ATGAA	3 cut(s)	227, 233, 250
TspGWI	ACGGA	1 cut(s)	152
TspRI	CASTG	2 cut(s)	175, 253
XcmI	CCANNNNNNNNNTGG	1 cut(s)	149
XhoI	CTCGAG	1 cut(s)	201
XspI	CTAG	2 cut(s)	21, 57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.