Rh4BG049600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0003961
Physical Location & Seq
Forward (+)
8863429 .. 8870084
6656 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG049600.1

Sequence Viewer

Length: 255 bp
ATGGTCTTTGGTATTGCTACAAAGATATCCCTACATGTAATGTTTGCTGTATATGCTGATCTCCATCGGCGTGGTGGCCATGTCCGTTGCACTGAAGATCTCGGTTCCGCTGGCCGCAGACCTCGAGCAAGGGCAAGGATGAATGGACTATCACCTCTTCATGATGCCACTGCTGTTATTTTCATCAATGTAACCTGGGCATTGGCAGCTGCTTCTGGGAAGCAGATTTGCATATGGCTTGGCCGATTCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

9.25

Weight (kDa)

11.19

Isoelectric Point (pI)

34.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 108, 115
AcoI YGGCCR 3 cut(s) 76, 112, 241
AcuI CTGAAG 1 cut(s) 114
AflIII ACRYGT 1 cut(s) 34
AjnI CCWGG 1 cut(s) 194
AluBI AGCT 1 cut(s) 209
AluI AGCT 1 cut(s) 209
Ama87I CYCGRG 1 cut(s) 123
AoxI GGCC 3 cut(s) 76, 112, 241
ApeKI GCWGC 2 cut(s) 206, 209
AsuHPI GGTGA 1 cut(s) 144
AvaI CYCGRG 1 cut(s) 123
BalI TGGCCA 1 cut(s) 78
BbvI GCAGC 2 cut(s) 196, 218
BccI CCATC 1 cut(s) 72
BciT130I CCWGG 1 cut(s) 196
BglII AGATCT 1 cut(s) 97
BisI GCNGC 3 cut(s) 115, 207, 210
BlsI GCNGC 3 cut(s) 116, 208, 211
Bme1390I CCNGG 1 cut(s) 196
BmeT110I CYCGRG 1 cut(s) 123
BmiI GGNNCC 1 cut(s) 106
BmrFI CCNGG 1 cut(s) 196
BmsI GCATC 1 cut(s) 154
BsaBI GATNNNNATC 1 cut(s) 63
BsaJI CCNNGG 1 cut(s) 195
Bse8I GATNNNNATC 1 cut(s) 63
BseBI CCWGG 1 cut(s) 196
BseDI CCNNGG 1 cut(s) 195
BseGI GGATG 1 cut(s) 144
BseJI GATNNNNATC 1 cut(s) 63
BseXI GCAGC 2 cut(s) 196, 218
BshFI GGCC 3 cut(s) 78, 114, 243
BsiHKCI CYCGRG 1 cut(s) 123
BsnI GGCC 3 cut(s) 78, 114, 243
BsoBI CYCGRG 1 cut(s) 123
Bsp143I GATC 2 cut(s) 58, 97
BspACI CCGC 2 cut(s) 108, 115
BspANI GGCC 3 cut(s) 78, 114, 243
BspHI TCATGA 1 cut(s) 160
BspLI GGNNCC 1 cut(s) 106
BssECI CCNNGG 1 cut(s) 195
BssMI GATC 2 cut(s) 58, 97
Bst2UI CCWGG 1 cut(s) 196
Bst6I CTCTTC 1 cut(s) 162
BstC8I GCNNGC 1 cut(s) 112
BstF5I GGATG 1 cut(s) 144
BstKTI GATC 2 cut(s) 61, 100
BstMBI GATC 2 cut(s) 58, 97
BstMWI GCNNNNNNNGC 2 cut(s) 53, 206
BstNI CCWGG 1 cut(s) 196
BstNSI RCATGY 1 cut(s) 38
BstSCI CCNGG 1 cut(s) 194
BstV1I GCAGC 2 cut(s) 196, 218
BstX2I RGATCY 1 cut(s) 97
BstXI CCANNNNNNTGG 1 cut(s) 71
BstYI RGATCY 1 cut(s) 97
BsuRI GGCC 3 cut(s) 78, 114, 243
BtsCI GGATG 1 cut(s) 144
BtsI GCAGTG 1 cut(s) 168
BtsIMutI CAGTG 2 cut(s) 90, 168
Cac8I GCNNGC 1 cut(s) 112
CciI TCATGA 1 cut(s) 160
CviAII CATG 3 cut(s) 35, 80, 161
CviJI RGCY 5 cut(s) 78, 114, 209, 238, 243
CviKI_1 RGCY 5 cut(s) 78, 114, 209, 238, 243
DpnI GATC 2 cut(s) 60, 99
DpnII GATC 2 cut(s) 58, 97
EaeI YGGCCR 3 cut(s) 76, 112, 241
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
Eco32I GATATC 1 cut(s) 27
Eco57I CTGAAG 1 cut(s) 114
Eco88I CYCGRG 1 cut(s) 123
EcoRII CCWGG 1 cut(s) 194
EcoRV GATATC 1 cut(s) 27
FaeI CATG 3 cut(s) 38, 83, 164
FaiI YATR 7 cut(s) 36, 52, 54, 81, 162, 233, 235
FatI CATG 3 cut(s) 34, 79, 160
FauNDI CATATG 1 cut(s) 233
Fnu4HI GCNGC 3 cut(s) 115, 207, 210
FokI GGATG 1 cut(s) 151
Fsp4HI GCNGC 3 cut(s) 115, 207, 210
GluI GCNGC 3 cut(s) 115, 207, 210
HaeIII GGCC 3 cut(s) 78, 114, 243
Hin1II CATG 3 cut(s) 38, 83, 164
HinfI GANTC 1 cut(s) 246
HphI GGTGA 1 cut(s) 144
Hpy188III TCNNGA 1 cut(s) 161
HpyCH4V TGCA 2 cut(s) 90, 231
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 206
Hsp92II CATG 3 cut(s) 38, 83, 164
Kzo9I GATC 2 cut(s) 58, 97
LpnPI CCDG 4 cut(s) 96, 181, 201, 208
Lsp1109I GCAGC 2 cut(s) 196, 218
LweI GCATC 1 cut(s) 154
MaeIII GTNAC 1 cut(s) 190
MalI GATC 2 cut(s) 60, 99
MboI GATC 2 cut(s) 58, 97
MboII GAAGA 2 cut(s) 107, 149
MflI RGATCY 1 cut(s) 97
MlsI TGGCCA 1 cut(s) 78
MluNI TGGCCA 1 cut(s) 78
MnlI CCTC 2 cut(s) 132, 165
Mox20I TGGCCA 1 cut(s) 78
MscI TGGCCA 1 cut(s) 78
MslI CAYNNNNRTG 1 cut(s) 69
Msp20I TGGCCA 1 cut(s) 78
MspA1I CMGCKG 2 cut(s) 110, 209
MspR9I CCNGG 1 cut(s) 196
MvaI CCWGG 1 cut(s) 196
MwoI GCNNNNNNNGC 2 cut(s) 53, 206
NdeI CATATG 1 cut(s) 233
NdeII GATC 2 cut(s) 58, 97
NlaIII CATG 3 cut(s) 38, 83, 164
NlaIV GGNNCC 1 cut(s) 106
NspI RCATGY 1 cut(s) 38
PaeR7I CTCGAG 1 cut(s) 123
PagI TCATGA 1 cut(s) 160
PciI ACATGT 1 cut(s) 34
PfeI GAWTC 1 cut(s) 246
PkrI GCNGC 3 cut(s) 116, 208, 211
PscI ACATGT 1 cut(s) 34
Psp6I CCWGG 1 cut(s) 194
PspGI CCWGG 1 cut(s) 194
PspN4I GGNNCC 1 cut(s) 106
PspXI VCTCGAGB 1 cut(s) 123
PsuI RGATCY 1 cut(s) 97
PvuII CAGCTG 1 cut(s) 209
RseI CAYNNNNRTG 1 cut(s) 69
SatI GCNGC 3 cut(s) 115, 207, 210
Sau3AI GATC 2 cut(s) 58, 97
ScrFI CCNGG 1 cut(s) 196
SetI ASST 4 cut(s) 124, 157, 197, 211
SfaNI GCATC 1 cut(s) 154
Sfr274I CTCGAG 1 cut(s) 123
SlaI CTCGAG 1 cut(s) 123
SmiMI CAYNNNNRTG 1 cut(s) 69
SmlI CTYRAG 1 cut(s) 123
SmoI CTYRAG 1 cut(s) 123
SsiI CCGC 2 cut(s) 108, 115
StyD4I CCNGG 1 cut(s) 194
TaqI TCGA 1 cut(s) 124
TauI GCSGC 1 cut(s) 117
TfiI GAWTC 1 cut(s) 246
TscAI CASTG 2 cut(s) 97, 175
TseI GCWGC 2 cut(s) 206, 209
TspDTI ATGAA 3 cut(s) 149, 155, 172
TspGWI ACGGA 1 cut(s) 74
TspRI CASTG 2 cut(s) 97, 175
XceI RCATGY 1 cut(s) 38
XcmI CCANNNNNNNNNTGG 1 cut(s) 71
XhoI CTCGAG 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.