Rh5CG356300

Patellin-3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0003961
Physical Location & Seq
Forward (+)
41842603 .. 41861378
18776 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG356300.1

Sequence Viewer

Length: 930 bp
ATGGCTCGCGTGATGCTGATCGTAAGACACTGCTGTTTGGAATCCGAAACAAAGCCACTTTATGAGCCCAAAATCGAGGAGAACCCAGTGAAGGAAGCAAAGGAAATAGCCAAGGAAACATCGCAATCCGCGATCTCTCCAGAGGAGGTTTCAATTTGGGGTGTTCCACTGCTCAAGGATGACAGGAGTGATGTGATTCTTCTCAAGTTTTTGACGGCTCAGGACTTCAAGGTGAAAGATGCTTTTGTTATGCTTCGAAACACAATCCACTGGAGGAAGCAGTTTAAGATTGATGCTCTTGCGGAGGAAGATCTCGATGATGATTTAGGAAAAGTGGTGTTTATGCATGGGTATGACAGAGAGGTTATGGAGAGGCCTCTGCTCGAGGCGGTGAAGGAGTCGTTTGCAGCGGAGATGGTGAAGTACACCATCAGAATGGTAGGGATCTGGGGGATTAGAAATGAGGAGTTGAGTGGTAGTGGCTTGGAGAAGATGAACATGTATGGTTGTGGTGGAGAGCTCGGTGGTGGTTATGGGTGTAGTGTGATAGGCAGAGTAGGAGGTGGTGCAGCAGCGAGTGGTGGTGGTGAGAGGGTGGTTTTCGCGGTGGTGACCTGGAAACTGCTCTCAGGTGTAGCTGAGAGAGCTTCTGATGCTACACTTCTCCACTTCAAAGCACAATCCTCATATTCAGCTGATGTTGTTAACTACATCAGAGATCTTGAGGCTGAAAAAGATAACGCATTGTTAAAGGAGAACCGGATTGACCTTATGAAGTCTGAAATCACTCTAAAGATTTGTACGATGCTTTTGAAGAGATGGGTGGAATGTAGCCTTACTTATGAAATTGGGCGTATGATGATGAGAGACAATGAGCATGACAAATCTTCTTTAAAAAAGTTGATTGAAGAGGCGCGAGAAGCTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0009507 GO:0009536 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO CRAL_TRIO_N

Protein Analysis

309

Amino Acids

34.76

Weight (kDa)

5.48

Isoelectric Point (pI)

36.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRAL_TRIO_N PF03765 43 - 87 1.5e-08 CRAL/TRIO, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 9, 131, 605, 916
AciI CCGC 5 cut(s) 129, 302, 389, 410, 605
AclWI GGATC 1 cut(s) 452
AfaI GTAC 2 cut(s) 425, 802
AfiI CCNNNNNNNGG 1 cut(s) 91
AflIII ACRYGT 1 cut(s) 498
AgsI TTSAA 5 cut(s) 153, 229, 673, 814, 908
AjnI CCWGG 1 cut(s) 614
AluBI AGCT 5 cut(s) 520, 638, 647, 695, 923
AluI AGCT 5 cut(s) 520, 638, 647, 695, 923
Alw21I GWGCWC 1 cut(s) 522
Alw26I GTCTC 1 cut(s) 861
AlwI GGATC 1 cut(s) 452
Ama87I CYCGRG 1 cut(s) 383
AoxI GGCC 1 cut(s) 374
ApeKI GCWGC 3 cut(s) 407, 569, 572
AspLEI GCGC 1 cut(s) 916
AsuHPI GGTGA 5 cut(s) 244, 403, 430, 599, 622
AsuII TTCGAA 1 cut(s) 256
AvaI CYCGRG 1 cut(s) 383
BanII GRGCYC 2 cut(s) 69, 522
Bbv12I GWGCWC 1 cut(s) 522
BbvI GCAGC 3 cut(s) 419, 581, 584
BccI CCATC 3 cut(s) 409, 437, 813
BceAI ACGGC 1 cut(s) 231
BciT130I CCWGG 1 cut(s) 616
BcoDI GTCTC 1 cut(s) 861
BglII AGATCT 2 cut(s) 310, 718
BisI GCNGC 3 cut(s) 408, 570, 573
BlsI GCNGC 3 cut(s) 409, 571, 574
Bme1390I CCNGG 1 cut(s) 616
BmeT110I CYCGRG 1 cut(s) 383
BmrFI CCNGG 1 cut(s) 616
BmrI ACTGGG 1 cut(s) 80
BmsI GCATC 5 cut(s) 3, 229, 283, 643, 795
BmuI ACTGGG 1 cut(s) 80
BpmI CTGGAG 2 cut(s) 123, 292
Bpu10I CCTNAGC 1 cut(s) 219
Bpu14I TTCGAA 1 cut(s) 256
BpuEI CTTGAG 3 cut(s) 158, 188, 743
BsaBI GATNNNNATC 1 cut(s) 17
BsaJI CCNNGG 1 cut(s) 111
BsaWI WCCGGW 1 cut(s) 759
Bsc4I CCNNNNNNNGG 1 cut(s) 91
Bse1I ACTGG 2 cut(s) 86, 275
Bse8I GATNNNNATC 1 cut(s) 17
BseBI CCWGG 1 cut(s) 616
BseDI CCNNGG 1 cut(s) 111
BseGI GGATG 1 cut(s) 184
BseJI GATNNNNATC 1 cut(s) 17
BseLI CCNNNNNNNGG 1 cut(s) 91
BseMII CTCAG 3 cut(s) 233, 630, 642
BseNI ACTGG 2 cut(s) 86, 275
BseRI GAGGAG 3 cut(s) 92, 158, 479
BseXI GCAGC 3 cut(s) 419, 581, 584
BsgI GTGCAG 1 cut(s) 588
Bsh1236I CGCG 4 cut(s) 9, 131, 605, 916
BshFI GGCC 1 cut(s) 376
BsiHKAI GWGCWC 1 cut(s) 522
BsiHKCI CYCGRG 1 cut(s) 383
BsiSI CCGG 1 cut(s) 760
BslI CCNNNNNNNGG 1 cut(s) 91
BsmAI GTCTC 1 cut(s) 861
BsnI GGCC 1 cut(s) 376
BsoBI CYCGRG 1 cut(s) 383
Bsp119I TTCGAA 1 cut(s) 256
Bsp1286I GDGCHC 2 cut(s) 69, 522
Bsp143I GATC 5 cut(s) 18, 132, 310, 444, 718
BspACI CCGC 5 cut(s) 129, 302, 389, 410, 605
BspANI GGCC 1 cut(s) 376
BspCNI CTCAG 3 cut(s) 232, 631, 641
BspFNI CGCG 4 cut(s) 9, 131, 605, 916
BspPI GGATC 1 cut(s) 452
BspT104I TTCGAA 1 cut(s) 256
BsrI ACTGG 2 cut(s) 86, 275
BssECI CCNNGG 1 cut(s) 111
BssMI GATC 5 cut(s) 18, 132, 310, 444, 718
BssT1I CCWWGG 1 cut(s) 111
Bst2UI CCWGG 1 cut(s) 616
Bst6I CTCTTC 2 cut(s) 809, 903
BstBI TTCGAA 1 cut(s) 256
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 3 cut(s) 219, 628, 639
BstEII GGTNACC 1 cut(s) 610
BstF5I GGATG 1 cut(s) 184
BstFNI CGCG 4 cut(s) 9, 131, 605, 916
BstHHI GCGC 1 cut(s) 916
BstKTI GATC 5 cut(s) 21, 135, 313, 447, 721
BstMAI GTCTC 1 cut(s) 861
BstMBI GATC 5 cut(s) 18, 132, 310, 444, 718
BstMWI GCNNNNNNNGC 3 cut(s) 644, 653, 920
BstNI CCWGG 1 cut(s) 616
BstNSI RCATGY 1 cut(s) 502
BstPI GGTNACC 1 cut(s) 610
BstSCI CCNGG 1 cut(s) 614
BstUI CGCG 4 cut(s) 9, 131, 605, 916
BstV1I GCAGC 3 cut(s) 419, 581, 584
BstX2I RGATCY 3 cut(s) 310, 444, 718
BstXI CCANNNNNNTGG 1 cut(s) 436
BstYI RGATCY 3 cut(s) 310, 444, 718
BsuRI GGCC 1 cut(s) 376
BtgZI GCGATG 1 cut(s) 105
BtsCI GGATG 1 cut(s) 184
BtsI GCAGTG 2 cut(s) 28, 167
BtsIMutI CAGTG 5 cut(s) 28, 93, 167, 268, 925
Cac8I GCNNGC 1 cut(s) 7
CfoI GCGC 1 cut(s) 916
Csp6I GTAC 2 cut(s) 424, 801
CviAII CATG 3 cut(s) 347, 499, 878
CviQI GTAC 2 cut(s) 424, 801
DdeI CTNAG 3 cut(s) 219, 628, 639
DpnI GATC 5 cut(s) 20, 134, 312, 446, 720
DpnII GATC 5 cut(s) 18, 132, 310, 444, 718
DraI TTTAAA 1 cut(s) 894
Eam1104I CTCTTC 2 cut(s) 809, 903
EarI CTCTTC 2 cut(s) 809, 903
Ecl136II GAGCTC 1 cut(s) 520
Eco130I CCWWGG 1 cut(s) 111
Eco147I AGGCCT 1 cut(s) 376
Eco24I GRGCYC 2 cut(s) 69, 522
Eco53kI GAGCTC 1 cut(s) 520
Eco88I CYCGRG 1 cut(s) 383
Eco91I GGTNACC 1 cut(s) 610
EcoICRI GAGCTC 1 cut(s) 520
EcoO65I GGTNACC 1 cut(s) 610
EcoRII CCWGG 1 cut(s) 614
EcoT14I CCWWGG 1 cut(s) 111
EcoT22I ATGCAT 1 cut(s) 348
EcoT38I GRGCYC 2 cut(s) 69, 522
ErhI CCWWGG 1 cut(s) 111
FaeI CATG 3 cut(s) 350, 502, 881
FatI CATG 3 cut(s) 346, 498, 877
Fnu4HI GCNGC 3 cut(s) 408, 570, 573
FokI GGATG 1 cut(s) 191
FriOI GRGCYC 2 cut(s) 69, 522
Fsp4HI GCNGC 3 cut(s) 408, 570, 573
GlaI GCGC 1 cut(s) 915
GluI GCNGC 3 cut(s) 408, 570, 573
GsuI CTGGAG 2 cut(s) 123, 292
HaeIII GGCC 1 cut(s) 376
HapII CCGG 1 cut(s) 760
HhaI GCGC 1 cut(s) 916
Hin1II CATG 3 cut(s) 350, 502, 881
Hin6I GCGC 1 cut(s) 914
HinP1I GCGC 1 cut(s) 914
HincII GTYRAC 1 cut(s) 706
HindII GTYRAC 1 cut(s) 706
HinfI GANTC 3 cut(s) 41, 196, 398
HpaI GTTAAC 1 cut(s) 706
HpaII CCGG 1 cut(s) 760
HphI GGTGA 5 cut(s) 244, 403, 430, 599, 622
Hpy166II GTNNAC 2 cut(s) 426, 706
Hpy188I TCNGA 5 cut(s) 46, 434, 652, 716, 781
Hpy188III TCNNGA 4 cut(s) 140, 221, 314, 722
Hpy8I GTNNAC 2 cut(s) 426, 706
HpyAV CCTTC 2 cut(s) 85, 388
HpyCH4V TGCA 3 cut(s) 346, 407, 569
HpyF10VI GCNNNNNNNGC 3 cut(s) 644, 653, 920
HpyF3I CTNAG 3 cut(s) 219, 628, 639
Hsp92II CATG 3 cut(s) 350, 502, 881
HspAI GCGC 1 cut(s) 914
KspAI GTTAAC 1 cut(s) 706
Kzo9I GATC 5 cut(s) 18, 132, 310, 444, 718
Lsp1109I GCAGC 3 cut(s) 419, 581, 584
LweI GCATC 5 cut(s) 3, 229, 283, 643, 795
MaeIII GTNAC 1 cut(s) 610
MalI GATC 5 cut(s) 20, 134, 312, 446, 720
MboI GATC 5 cut(s) 18, 132, 310, 444, 718
MboII GAAGA 6 cut(s) 191, 320, 502, 826, 879, 920
MflI RGATCY 3 cut(s) 310, 444, 718
MhlI GDGCHC 2 cut(s) 69, 522
MluCI AATT 2 cut(s) 153, 846
MlyI GAGTC 1 cut(s) 407
Mph1103I ATGCAT 1 cut(s) 348
MseI TTAA 4 cut(s) 285, 705, 749, 893
MslI CAYNNNNRTG 2 cut(s) 351, 434
MspA1I CMGCKG 2 cut(s) 410, 695
MspI CCGG 1 cut(s) 760
MspR9I CCNGG 1 cut(s) 616
MvaI CCWGG 1 cut(s) 616
MvnI CGCG 4 cut(s) 9, 131, 605, 916
MwoI GCNNNNNNNGC 3 cut(s) 644, 653, 920
NdeII GATC 5 cut(s) 18, 132, 310, 444, 718
NlaIII CATG 3 cut(s) 350, 502, 881
NmuCI GTSAC 1 cut(s) 610
NsiI ATGCAT 1 cut(s) 348
NspI RCATGY 1 cut(s) 502
NspV TTCGAA 1 cut(s) 256
PaeR7I CTCGAG 1 cut(s) 383
PceI AGGCCT 1 cut(s) 376
PciI ACATGT 1 cut(s) 498
PcsI WCGNNNNNNNCGW 1 cut(s) 128
PfeI GAWTC 2 cut(s) 41, 196
PkrI GCNGC 3 cut(s) 409, 571, 574
PleI GAGTC 1 cut(s) 406
PpsI GAGTC 1 cut(s) 406
PscI ACATGT 1 cut(s) 498
Psp124BI GAGCTC 1 cut(s) 522
Psp6I CCWGG 1 cut(s) 614
PspEI GGTNACC 1 cut(s) 610
PspGI CCWGG 1 cut(s) 614
PspXI VCTCGAGB 1 cut(s) 383
PsuI RGATCY 3 cut(s) 310, 444, 718
PvuII CAGCTG 1 cut(s) 695
RsaI GTAC 2 cut(s) 425, 802
RsaNI GTAC 2 cut(s) 424, 801
RseI CAYNNNNRTG 2 cut(s) 351, 434
SacI GAGCTC 1 cut(s) 522
SaqAI TTAA 4 cut(s) 285, 705, 749, 893
SatI GCNGC 3 cut(s) 408, 570, 573
Sau3AI GATC 5 cut(s) 18, 132, 310, 444, 718
SchI GAGTC 1 cut(s) 407
ScrFI CCNGG 1 cut(s) 616
SduI GDGCHC 2 cut(s) 69, 522
SfaNI GCATC 5 cut(s) 3, 229, 283, 643, 795
Sfr274I CTCGAG 1 cut(s) 383
SfuI TTCGAA 1 cut(s) 256
SlaI CTCGAG 1 cut(s) 383
SmiMI CAYNNNNRTG 2 cut(s) 351, 434
SmlI CTYRAG 4 cut(s) 173, 203, 383, 722
SmoI CTYRAG 4 cut(s) 173, 203, 383, 722
Sse9I AATT 2 cut(s) 153, 846
SseBI AGGCCT 1 cut(s) 376
SsiI CCGC 5 cut(s) 129, 302, 389, 410, 605
SstI GAGCTC 1 cut(s) 522
StuI AGGCCT 1 cut(s) 376
StyD4I CCNGG 1 cut(s) 614
StyI CCWWGG 1 cut(s) 111
TaqI TCGA 4 cut(s) 75, 256, 315, 384
TasI AATT 2 cut(s) 153, 846
TatI WGTACW 1 cut(s) 423
TfiI GAWTC 2 cut(s) 41, 196
Tru1I TTAA 4 cut(s) 285, 705, 749, 893
Tru9I TTAA 4 cut(s) 285, 705, 749, 893
TscAI CASTG 4 cut(s) 35, 93, 174, 275
TseFI GTSAC 1 cut(s) 610
TseI GCWGC 3 cut(s) 407, 569, 572
Tsp45I GTSAC 1 cut(s) 610
TspDTI ATGAA 3 cut(s) 509, 788, 858
TspRI CASTG 4 cut(s) 35, 93, 174, 275
XceI RCATGY 1 cut(s) 502
XhoI CTCGAG 1 cut(s) 383
Zsp2I ATGCAT 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.