Patellin-3-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom01g10910 |
| rosa_chinensis | RchiOBHm_Chr4g0392531 RchiOBHm_Chr4g0410971 |
| rosa_laevigata | RLG00000003960 RLG00000022712 RLG00000029384 RLG00000034084 RLG00000034554 |
| rosa_multiflora | Rmu_sc0002343.1_g000077 Rmu_sc0006432.1_g000008 Rmu_sc0037170.1_g000002 |
| rosa_roxburghii | Rroxscaffold_1G00033090 Rroxscaffold_1G00060150 Rroxscaffold_2G00117630 Rroxscaffold_2G00128320 Rroxscaffold_3G00245960 Rroxscaffold_5G00342110 Rroxscaffold_5G00366850 Rroxscaffold_5G00368690 |
| rosa_samantha | Rh1DG127400 Rh2AG332200 Rh2AG463900 Rh2AG480800 Rh2CG467000 Rh3BG346400 Rh3CG344300 Rh3DG345500 Rh4AG256100 Rh4BG049600 Rh4BG261400 Rh5AG320600 Rh5BG126500 Rh5CG356300 Rh5DG556100 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 4 cut(s) | 53, 161, 336, 389 |
| AclWI | GGATC | 1 cut(s) | 10 |
| AfaI | GTAC | 1 cut(s) | 225 |
| AgsI | TTSAA | 1 cut(s) | 403 |
| AluBI | AGCT | 1 cut(s) | 304 |
| AluI | AGCT | 1 cut(s) | 304 |
| Alw21I | GWGCWC | 1 cut(s) | 306 |
| AlwI | GGATC | 1 cut(s) | 10 |
| AoxI | GGCC | 1 cut(s) | 125 |
| ApeKI | GCWGC | 3 cut(s) | 158, 353, 356 |
| AsuHPI | GGTGA | 3 cut(s) | 181, 383, 406 |
| AsuII | TTCGAA | 1 cut(s) | 7 |
| BanII | GRGCYC | 1 cut(s) | 306 |
| Bbv12I | GWGCWC | 1 cut(s) | 306 |
| BbvI | GCAGC | 3 cut(s) | 170, 365, 368 |
| BccI | CCATC | 1 cut(s) | 160 |
| BglII | AGATCT | 1 cut(s) | 61 |
| BisI | GCNGC | 3 cut(s) | 159, 354, 357 |
| BlsI | GCNGC | 3 cut(s) | 160, 355, 358 |
| BmsI | GCATC | 1 cut(s) | 34 |
| BpmI | CTGGAG | 1 cut(s) | 43 |
| Bpu14I | TTCGAA | 1 cut(s) | 7 |
| BpuEI | CTTGAG | 1 cut(s) | 119 |
| Bse1I | ACTGG | 1 cut(s) | 26 |
| BseGI | GGATG | 1 cut(s) | 151 |
| BseMII | CTCAG | 1 cut(s) | 426 |
| BseNI | ACTGG | 1 cut(s) | 26 |
| BseRI | GAGGAG | 1 cut(s) | 263 |
| BseXI | GCAGC | 3 cut(s) | 170, 365, 368 |
| BsgI | GTGCAG | 1 cut(s) | 372 |
| BshFI | GGCC | 1 cut(s) | 127 |
| BsiHKAI | GWGCWC | 1 cut(s) | 306 |
| BsnI | GGCC | 1 cut(s) | 127 |
| Bsp119I | TTCGAA | 1 cut(s) | 7 |
| Bsp1286I | GDGCHC | 1 cut(s) | 306 |
| Bsp143I | GATC | 2 cut(s) | 15, 61 |
| BspACI | CCGC | 4 cut(s) | 53, 161, 336, 389 |
| BspANI | GGCC | 1 cut(s) | 127 |
| BspCNI | CTCAG | 1 cut(s) | 425 |
| BspPI | GGATC | 1 cut(s) | 10 |
| BspT104I | TTCGAA | 1 cut(s) | 7 |
| BsrI | ACTGG | 1 cut(s) | 26 |
| BssMI | GATC | 2 cut(s) | 15, 61 |
| BstBI | TTCGAA | 1 cut(s) | 7 |
| BstDEI | CTNAG | 1 cut(s) | 412 |
| BstF5I | GGATG | 1 cut(s) | 151 |
| BstKTI | GATC | 2 cut(s) | 18, 64 |
| BstMBI | GATC | 2 cut(s) | 15, 61 |
| BstV1I | GCAGC | 3 cut(s) | 170, 365, 368 |
| BstX2I | RGATCY | 1 cut(s) | 61 |
| BstYI | RGATCY | 1 cut(s) | 61 |
| BsuRI | GGCC | 1 cut(s) | 127 |
| BtsCI | GGATG | 1 cut(s) | 151 |
| BtsI | GCAGTG | 1 cut(s) | 147 |
| BtsIMutI | CAGTG | 3 cut(s) | 19, 147, 420 |
| Csp6I | GTAC | 1 cut(s) | 224 |
| CviAII | CATG | 2 cut(s) | 13, 98 |
| CviJI | RGCY | 2 cut(s) | 127, 304 |
| CviKI_1 | RGCY | 2 cut(s) | 127, 304 |
| CviQI | GTAC | 1 cut(s) | 224 |
| DdeI | CTNAG | 1 cut(s) | 412 |
| DpnI | GATC | 2 cut(s) | 17, 63 |
| DpnII | GATC | 2 cut(s) | 15, 61 |
| EciI | GGCGGA | 1 cut(s) | 351 |
| Ecl136II | GAGCTC | 1 cut(s) | 304 |
| Eco147I | AGGCCT | 1 cut(s) | 127 |
| Eco24I | GRGCYC | 1 cut(s) | 306 |
| Eco53kI | GAGCTC | 1 cut(s) | 304 |
| EcoICRI | GAGCTC | 1 cut(s) | 304 |
| EcoT22I | ATGCAT | 1 cut(s) | 99 |
| EcoT38I | GRGCYC | 1 cut(s) | 306 |
| FaeI | CATG | 2 cut(s) | 16, 101 |
| FaiI | YATR | 8 cut(s) | 14, 95, 99, 105, 119, 232, 288, 318 |
| FatI | CATG | 2 cut(s) | 12, 97 |
| Fnu4HI | GCNGC | 3 cut(s) | 159, 354, 357 |
| FokI | GGATG | 1 cut(s) | 158 |
| FriOI | GRGCYC | 1 cut(s) | 306 |
| Fsp4HI | GCNGC | 3 cut(s) | 159, 354, 357 |
| GluI | GCNGC | 3 cut(s) | 159, 354, 357 |
| GsuI | CTGGAG | 1 cut(s) | 43 |
| HaeIII | GGCC | 1 cut(s) | 127 |
| Hin1II | CATG | 2 cut(s) | 16, 101 |
| HinfI | GANTC | 2 cut(s) | 149, 418 |
| HphI | GGTGA | 3 cut(s) | 181, 383, 406 |
| Hpy188III | TCNNGA | 1 cut(s) | 65 |
| HpyAV | CCTTC | 2 cut(s) | 22, 214 |
| HpyCH4V | TGCA | 3 cut(s) | 97, 158, 353 |
| HpyF3I | CTNAG | 1 cut(s) | 412 |
| Hsp92II | CATG | 2 cut(s) | 16, 101 |
| Kzo9I | GATC | 2 cut(s) | 15, 61 |
| LpnPI | CCDG | 1 cut(s) | 7 |
| Lsp1109I | GCAGC | 3 cut(s) | 170, 365, 368 |
| LweI | GCATC | 1 cut(s) | 34 |
| MaeIII | GTNAC | 1 cut(s) | 394 |
| MalI | GATC | 2 cut(s) | 17, 63 |
| MboI | GATC | 2 cut(s) | 15, 61 |
| MboII | GAAGA | 2 cut(s) | 71, 286 |
| MflI | RGATCY | 1 cut(s) | 61 |
| MhlI | GDGCHC | 1 cut(s) | 306 |
| MlyI | GAGTC | 1 cut(s) | 158 |
| MnlI | CCTC | 9 cut(s) | 18, 49, 106, 117, 138, 241, 249, 338, 369 |
| Mph1103I | ATGCAT | 1 cut(s) | 99 |
| MseI | TTAA | 1 cut(s) | 36 |
| MslI | CAYNNNNRTG | 1 cut(s) | 102 |
| MspA1I | CMGCKG | 1 cut(s) | 161 |
| NdeII | GATC | 2 cut(s) | 15, 61 |
| NlaIII | CATG | 2 cut(s) | 16, 101 |
| NmuCI | GTSAC | 1 cut(s) | 394 |
| NsiI | ATGCAT | 1 cut(s) | 99 |
| NspV | TTCGAA | 1 cut(s) | 7 |
| PceI | AGGCCT | 1 cut(s) | 127 |
| PkrI | GCNGC | 3 cut(s) | 160, 355, 358 |
| PleI | GAGTC | 1 cut(s) | 157 |
| PpsI | GAGTC | 1 cut(s) | 157 |
| Psp124BI | GAGCTC | 1 cut(s) | 306 |
| PsuI | RGATCY | 1 cut(s) | 61 |
| RsaI | GTAC | 1 cut(s) | 225 |
| RsaNI | GTAC | 1 cut(s) | 224 |
| RseI | CAYNNNNRTG | 1 cut(s) | 102 |
| SacI | GAGCTC | 1 cut(s) | 306 |
| SaqAI | TTAA | 1 cut(s) | 36 |
| SatI | GCNGC | 3 cut(s) | 159, 354, 357 |
| Sau3AI | GATC | 2 cut(s) | 15, 61 |
| SchI | GAGTC | 1 cut(s) | 158 |
| SduI | GDGCHC | 1 cut(s) | 306 |
| SetI | ASST | 5 cut(s) | 117, 225, 287, 306, 349 |
| SfaNI | GCATC | 1 cut(s) | 34 |
| SfuI | TTCGAA | 1 cut(s) | 7 |
| SgeI | CNNG | 9 cut(s) | 25, 34, 62, 77, 110, 148, 280, 317, 372 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 102 |
| SmlI | CTYRAG | 1 cut(s) | 134 |
| SmoI | CTYRAG | 1 cut(s) | 134 |
| SseBI | AGGCCT | 1 cut(s) | 127 |
| SsiI | CCGC | 4 cut(s) | 53, 161, 336, 389 |
| SstI | GAGCTC | 1 cut(s) | 306 |
| StuI | AGGCCT | 1 cut(s) | 127 |
| TaqI | TCGA | 1 cut(s) | 7 |
| Tru1I | TTAA | 1 cut(s) | 36 |
| Tru9I | TTAA | 1 cut(s) | 36 |
| TscAI | CASTG | 3 cut(s) | 26, 147, 420 |
| TseFI | GTSAC | 1 cut(s) | 394 |
| TseI | GCWGC | 3 cut(s) | 158, 353, 356 |
| Tsp45I | GTSAC | 1 cut(s) | 394 |
| TspDTI | ATGAA | 1 cut(s) | 293 |
| TspGWI | ACGGA | 1 cut(s) | 241 |
| TspRI | CASTG | 3 cut(s) | 26, 147, 420 |
| Zsp2I | ATGCAT | 1 cut(s) | 99 |