RLG00000016549

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0005206
Physical Location & Seq
Forward (+)
7557626 .. 7559489
1864 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016549

Sequence Viewer

Length: 315 bp
ATGACAATTCCCGATCGGCCTACGACGTCATCCAAAAGCGTCACCGGCTATGAGCTAGACCAGAATCTCAAGCGCGGAGGTAATTTGTGGGTTGGAGTGGTCGAGAAGCAGGCGAGGCGGTATTTGAAGGATCAATGCTGGTCTTTTCCGTCGGCGGCAAAGGGTACGGTGTTGCCTCAGCAATCTGGTGCTGCAGGTTCATCTGGTGGTGGCACTATTGATCGGTGGCTATTTCATTTGGCGGCTGATGGGGTGGATAGGCAGGCCGTTGGAAACCATGCCGTTTGTGGAGATGCAAGGGATCCCTCCTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.08

Weight (kDa)

8.55

Isoelectric Point (pI)

41.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 29
Acc36I ACCTGC 1 cut(s) 185
AccII CGCG 1 cut(s) 75
AciI CCGC 4 cut(s) 75, 118, 155, 242
AclWI GGATC 3 cut(s) 138, 296, 309
AcyI GRCGYC 1 cut(s) 26
AfaI GTAC 1 cut(s) 166
AgsI TTSAA 1 cut(s) 127
AluBI AGCT 1 cut(s) 55
AluI AGCT 1 cut(s) 55
AlwI GGATC 3 cut(s) 138, 296, 309
AoxI GGCC 2 cut(s) 17, 264
ApeKI GCWGC 1 cut(s) 191
AspLEI GCGC 1 cut(s) 75
AsuHPI GGTGA 1 cut(s) 34
BamHI GGATCC 1 cut(s) 301
BbvCI CCTCAGC 1 cut(s) 177
BbvI GCAGC 1 cut(s) 178
BccI CCATC 1 cut(s) 242
BceAI ACGGC 2 cut(s) 251, 266
BfaI CTAG 2 cut(s) 56, 313
BfmI CTRYAG 1 cut(s) 192
BfuAI ACCTGC 1 cut(s) 185
BisI GCNGC 3 cut(s) 156, 192, 243
BlsI GCNGC 3 cut(s) 157, 193, 244
BmiI GGNNCC 1 cut(s) 303
BmsI GCATC 1 cut(s) 283
Bpu10I CCTNAGC 1 cut(s) 177
BpuEI CTTGAG 1 cut(s) 53
BsaHI GRCGYC 1 cut(s) 26
Bse118I RCCGGY 1 cut(s) 44
BseGI GGATG 1 cut(s) 29
BseMII CTCAG 1 cut(s) 191
BseXI GCAGC 1 cut(s) 178
Bsh1236I CGCG 1 cut(s) 75
Bsh1285I CGRYCG 1 cut(s) 16
BshFI GGCC 2 cut(s) 19, 266
BsiEI CGRYCG 1 cut(s) 16
BsiSI CCGG 1 cut(s) 45
BsnI GGCC 2 cut(s) 19, 266
Bsp143I GATC 4 cut(s) 13, 130, 220, 301
BspACI CCGC 4 cut(s) 75, 118, 155, 242
BspANI GGCC 2 cut(s) 19, 266
BspCNI CTCAG 1 cut(s) 190
BspFNI CGCG 1 cut(s) 75
BspLI GGNNCC 1 cut(s) 303
BspMAI CTGCAG 1 cut(s) 196
BspMI ACCTGC 1 cut(s) 185
BspPI GGATC 3 cut(s) 138, 296, 309
BsrFI RCCGGY 1 cut(s) 44
BssAI RCCGGY 1 cut(s) 44
BssMI GATC 4 cut(s) 13, 130, 220, 301
BssNI GRCGYC 1 cut(s) 26
Bst4CI ACNGT 1 cut(s) 169
BstACI GRCGYC 1 cut(s) 26
BstC8I GCNNGC 2 cut(s) 111, 264
BstDEI CTNAG 1 cut(s) 177
BstF5I GGATG 1 cut(s) 29
BstFNI CGCG 1 cut(s) 75
BstHHI GCGC 1 cut(s) 75
BstKTI GATC 4 cut(s) 16, 133, 223, 304
BstMBI GATC 4 cut(s) 13, 130, 220, 301
BstMCI CGRYCG 1 cut(s) 16
BstMWI GCNNNNNNNGC 2 cut(s) 45, 115
BstSFI CTRYAG 1 cut(s) 192
BstUI CGCG 1 cut(s) 75
BstV1I GCAGC 1 cut(s) 178
BstX2I RGATCY 1 cut(s) 301
BstYI RGATCY 1 cut(s) 301
BsuRI GGCC 2 cut(s) 19, 266
BtsCI GGATG 1 cut(s) 29
BveI ACCTGC 1 cut(s) 185
Cac8I GCNNGC 2 cut(s) 111, 264
CfoI GCGC 1 cut(s) 75
Cfr10I RCCGGY 1 cut(s) 44
CseI GACGC 1 cut(s) 28
Csp6I GTAC 1 cut(s) 165
CviAII CATG 1 cut(s) 278
CviJI RGCY 6 cut(s) 19, 48, 55, 229, 245, 266
CviKI_1 RGCY 6 cut(s) 19, 48, 55, 229, 245, 266
CviQI GTAC 1 cut(s) 165
DdeI CTNAG 1 cut(s) 177
DpnI GATC 4 cut(s) 15, 132, 222, 303
DpnII GATC 4 cut(s) 13, 130, 220, 301
FaeI CATG 1 cut(s) 281
FaiI YATR 2 cut(s) 51, 279
FatI CATG 1 cut(s) 277
Fnu4HI GCNGC 3 cut(s) 156, 192, 243
FokI GGATG 1 cut(s) 16
Fsp4HI GCNGC 3 cut(s) 156, 192, 243
FspBI CTAG 2 cut(s) 56, 313
GlaI GCGC 1 cut(s) 74
GluI GCNGC 3 cut(s) 156, 192, 243
HaeIII GGCC 2 cut(s) 19, 266
HapII CCGG 1 cut(s) 45
HgaI GACGC 1 cut(s) 28
HhaI GCGC 1 cut(s) 75
Hin1I GRCGYC 1 cut(s) 26
Hin1II CATG 1 cut(s) 281
Hin6I GCGC 1 cut(s) 73
HinP1I GCGC 1 cut(s) 73
HinfI GANTC 1 cut(s) 64
HpaII CCGG 1 cut(s) 45
HphI GGTGA 1 cut(s) 34
Hpy188III TCNNGA 2 cut(s) 11, 103
Hpy99I CGWCG 2 cut(s) 28, 154
HpyAV CCTTC 1 cut(s) 121
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4IV ACGT 1 cut(s) 26
HpyCH4V TGCA 2 cut(s) 194, 296
HpyF10VI GCNNNNNNNGC 2 cut(s) 45, 115
HpyF3I CTNAG 1 cut(s) 177
HpySE526I ACGT 1 cut(s) 26
Hsp92I GRCGYC 1 cut(s) 26
Hsp92II CATG 1 cut(s) 281
HspAI GCGC 1 cut(s) 73
Kzo9I GATC 4 cut(s) 13, 130, 220, 301
LpnPI CCDG 8 cut(s) 58, 74, 95, 124, 171, 180, 189, 248
Lsp1109I GCAGC 1 cut(s) 178
LweI GCATC 1 cut(s) 283
MaeI CTAG 2 cut(s) 56, 313
MaeII ACGT 1 cut(s) 26
MaeIII GTNAC 1 cut(s) 40
MalI GATC 4 cut(s) 15, 132, 222, 303
MboI GATC 4 cut(s) 13, 130, 220, 301
MflI RGATCY 1 cut(s) 301
MluCI AATT 2 cut(s) 6, 82
MmeI TCCRAC 2 cut(s) 73, 250
MnlI CCTC 3 cut(s) 71, 108, 186
MspI CCGG 1 cut(s) 45
MvnI CGCG 1 cut(s) 75
MwoI GCNNNNNNNGC 2 cut(s) 45, 115
NdeII GATC 4 cut(s) 13, 130, 220, 301
NlaIII CATG 1 cut(s) 281
NlaIV GGNNCC 1 cut(s) 303
NmuCI GTSAC 1 cut(s) 40
PfeI GAWTC 1 cut(s) 64
PkrI GCNGC 3 cut(s) 157, 193, 244
Ple19I CGATCG 1 cut(s) 16
PspN4I GGNNCC 1 cut(s) 303
PstI CTGCAG 1 cut(s) 196
PsuI RGATCY 1 cut(s) 301
PvuI CGATCG 1 cut(s) 16
RsaI GTAC 1 cut(s) 166
RsaNI GTAC 1 cut(s) 165
SatI GCNGC 3 cut(s) 156, 192, 243
Sau3AI GATC 4 cut(s) 13, 130, 220, 301
SetI ASST 4 cut(s) 29, 57, 82, 199
SfaNI GCATC 1 cut(s) 283
SfcI CTRYAG 1 cut(s) 192
SmlI CTYRAG 1 cut(s) 68
SmoI CTYRAG 1 cut(s) 68
Sse9I AATT 2 cut(s) 6, 82
SsiI CCGC 4 cut(s) 75, 118, 155, 242
SspMI CTAG 2 cut(s) 56, 313
TaaI ACNGT 1 cut(s) 169
TaiI ACGT 1 cut(s) 29
TaqI TCGA 1 cut(s) 102
TasI AATT 2 cut(s) 6, 82
TauI GCSGC 2 cut(s) 158, 245
TfiI GAWTC 1 cut(s) 64
TseFI GTSAC 1 cut(s) 40
TseI GCWGC 1 cut(s) 191
Tsp45I GTSAC 1 cut(s) 40
TspDTI ATGAA 2 cut(s) 189, 224
TspGWI ACGGA 1 cut(s) 138
XcmI CCANNNNNNNNNTGG 1 cut(s) 284
XspI CTAG 2 cut(s) 56, 313
ZraI GACGTC 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.