Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003683.1

Orthogroup ID

OG0005206

Physical Location & Seq

Genomic Coordinates Forward (+)

17234 .. 17745

Gene Structure 512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003683.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

atggctcttcgatggtttctccttctcagcctcatttgcagtattctactgcttgtcgatgttactcacttagttgctcaggatacccgaaaggcttatgttgtgtatatgggcgacaagccaaagaacgaggtaccaatattacctgatcttcatgtgaatatgctacaggacgtagttgacagcagcaacaatgttattgcacatgaagctctgcttcttcacagctacaagagaagtttcaatggatttgctgcaatgctcacagagcaggaagcacaaaaaataactggtactactgcaaccctacctttaaaaataaatcttactattcatacgagaatagtcggcgtagtgtacctataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 Peptidase_S8

Protein Analysis

121

Amino Acids

13.56

Weight (kDa)

6.96

Isoelectric Point (pI)

34.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005206)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0325921
rosa_laevigata	RLG00000013895 RLG00000016549 RLG00000027113
rosa_multiflora	Rmu_co8145310.1_g000001 Rmu_sc0003683.1_g000004 Rmu_sc0013657.1_g000015
rosa_roxburghii	Rroxscaffold_4G00309930
rosa_rugosa	Rorug04G0112300
rosa_samantha	Rh1AG072200 Rh1AG072500 Rh1BG155700 Rh1BG323700 Rh1CG174700 Rh1CG336900 Rh1CG339700 Rh1DG076500 Rh1DG076900 Rh1DG103000 Rh1DG187300 Rh1DG347100 Rh1DG349600 Rh1DG350900 Rh1DG354300 Rh1DG356800 Rh4AG068100 Rh4AG068200 Rh4BG066600 Rh4CG073800 Rh4DG063600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	133
AccB1I	GGYRCC	1 cut(s)	133
AfaI	GTAC	3 cut(s)	135, 295, 359
AgsI	TTSAA	1 cut(s)	244
AluBI	AGCT	2 cut(s)	212, 228
AluI	AGCT	2 cut(s)	212, 228
ApeKI	GCWGC	2 cut(s)	186, 254
Asp718I	GGTACC	1 cut(s)	133
BanI	GGYRCC	1 cut(s)	133
BbvI	GCAGC	2 cut(s)	198, 241
BccI	CCATC	1 cut(s)	6
BciVI	GTATCC	1 cut(s)	76
BfmI	CTRYAG	1 cut(s)	167
BfuI	GTATCC	1 cut(s)	76
BisI	GCNGC	2 cut(s)	187, 255
BlsI	GCNGC	2 cut(s)	188, 256
BmiI	GGNNCC	1 cut(s)	135
Bpu10I	CCTNAGC	1 cut(s)	78
Bse1I	ACTGG	1 cut(s)	295
Bse3DI	GCAATG	1 cut(s)	264
BseMI	GCAATG	1 cut(s)	264
BseMII	CTCAG	2 cut(s)	40, 92
BseNI	ACTGG	1 cut(s)	295
BseXI	GCAGC	2 cut(s)	198, 241
BshNI	GGYRCC	1 cut(s)	133
Bsp143I	GATC	1 cut(s)	148
BspCNI	CTCAG	2 cut(s)	39, 91
BspLI	GGNNCC	1 cut(s)	135
BspQI	GCTCTTC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	133
BsrDI	GCAATG	1 cut(s)	264
BsrI	ACTGG	1 cut(s)	295
BssMI	GATC	1 cut(s)	148
Bst6I	CTCTTC	1 cut(s)	12
BstDEI	CTNAG	3 cut(s)	26, 70, 78
BstKTI	GATC	1 cut(s)	151
BstMBI	GATC	1 cut(s)	148
BstMWI	GCNNNNNNNGC	3 cut(s)	36, 209, 268
BstSFI	CTRYAG	1 cut(s)	167
BstV1I	GCAGC	2 cut(s)	198, 241
BsuI	GTATCC	1 cut(s)	76
Csp6I	GTAC	3 cut(s)	134, 294, 358
CviAII	CATG	2 cut(s)	155, 206
CviJI	RGCY	6 cut(s)	5, 30, 95, 121, 212, 228
CviKI_1	RGCY	6 cut(s)	5, 30, 95, 121, 212, 228
CviQI	GTAC	3 cut(s)	134, 294, 358
DdeI	CTNAG	3 cut(s)	26, 70, 78
DpnI	GATC	1 cut(s)	150
DpnII	GATC	1 cut(s)	148
DraI	TTTAAA	1 cut(s)	315
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
FaeI	CATG	2 cut(s)	158, 209
FaiI	YATR	8 cut(s)	99, 108, 110, 156, 164, 207, 336, 364
FalI	AAGNNNNNCTT	2 cut(s)	201, 233
FatI	CATG	2 cut(s)	154, 205
Fnu4HI	GCNGC	2 cut(s)	187, 255
Fsp4HI	GCNGC	2 cut(s)	187, 255
GluI	GCNGC	2 cut(s)	187, 255
Hin1II	CATG	2 cut(s)	158, 209
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
Hpy166II	GTNNAC	2 cut(s)	181, 358
Hpy188III	TCNNGA	1 cut(s)	80
Hpy8I	GTNNAC	2 cut(s)	181, 358
HpyAV	CCTTC	1 cut(s)	32
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	4 cut(s)	39, 203, 257, 302
HpyF10VI	GCNNNNNNNGC	3 cut(s)	36, 209, 268
HpyF3I	CTNAG	3 cut(s)	26, 70, 78
HpySE526I	ACGT	1 cut(s)	174
Hsp92II	CATG	2 cut(s)	158, 209
KpnI	GGTACC	1 cut(s)	137
Kzo9I	GATC	1 cut(s)	148
LguI	GCTCTTC	1 cut(s)	12
LpnPI	CCDG	5 cut(s)	65, 155, 159, 257, 276
Lsp1109I	GCAGC	2 cut(s)	198, 241
MaeII	ACGT	1 cut(s)	174
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	1 cut(s)	150
MboI	GATC	1 cut(s)	148
MboII	GAAGA	2 cut(s)	143, 212
MnlI	CCTC	2 cut(s)	41, 124
MseI	TTAA	1 cut(s)	314
MwoI	GCNNNNNNNGC	3 cut(s)	36, 209, 268
NdeII	GATC	1 cut(s)	148
NlaIII	CATG	2 cut(s)	158, 209
NlaIV	GGNNCC	1 cut(s)	135
PciSI	GCTCTTC	1 cut(s)	12
PkrI	GCNGC	2 cut(s)	188, 256
PspN4I	GGNNCC	1 cut(s)	135
RsaI	GTAC	3 cut(s)	135, 295, 359
RsaNI	GTAC	3 cut(s)	134, 294, 358
SapI	GCTCTTC	1 cut(s)	12
SaqAI	TTAA	1 cut(s)	314
SatI	GCNGC	2 cut(s)	187, 255
Sau3AI	GATC	1 cut(s)	148
SetI	ASST	7 cut(s)	135, 148, 177, 214, 230, 313, 363
SfcI	CTRYAG	1 cut(s)	167
SspI	AATATT	1 cut(s)	141
TaiI	ACGT	1 cut(s)	177
TaqI	TCGA	2 cut(s)	10, 57
Tru1I	TTAA	1 cut(s)	314
Tru9I	TTAA	1 cut(s)	314
TseI	GCWGC	2 cut(s)	186, 254
TspDTI	ATGAA	3 cut(s)	143, 222, 323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.