Rorug04G0112300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0005206
Physical Location & Seq
Forward (+)
17690078 .. 17691799
1722 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0112300.1

Sequence Viewer

Length: 1107 bp
ATGTCGAGAAATTACACTGCCGTTGCCGTGGCCGTTGCCGCTGCTACCGTTGCTGCTTTCGTTGCCGTTGCGTTGGAGAGTTACCATGGAGTAGCATTAGTAGTTGTCTGTGTGATTGCTATCATAGTTGTAGTATGGAGGAAACGACGTAATCAGAAAGGTAGCAGCTCTGATGATCCGACACTCACAATGGACAATTTTCTAAATGATATGGAAAGAGAGAAGCCCATCAGGTTTACTTCTCTACAACTTCGGATTGCAACTGATAACTTCACCAACTTGTTGGGTTCAGGAGGGTTTGGTTCAGTTTATAAAGGTGTATCTAGTAATGGAACACTTGTGGCAGTGAAGGTTCTAAGTGGTACCTCGGACAAGAGAATTGATGAGCAATTCATGGCGGAAGTTAGTACACTTGGCAGGATTCATCATGTCAACTTGGTTCATCTCCATGGTTTCTGCTTTGAGAGACACCTCAGAGCGCTTGTTTATGAGTATATGTCAAATGATGTGAATTTCTTCCCTAAAGTTGCTGATTTCGGTTTGGCCAAGCTGTGCAACAGGGACAATACTCATATATCAATGACAGGTGGGAGGGGAACTCCTGGTTATGCTGCACCAGAACTTTGGCTGGGGCTTCCTATAACCCACAAATGTGATGTGTACAGCTTTGGAATGCTGTTATTCGAGATTATAGGTAGAAGAAGGAACCTTGACCTTAATCTTCCAGAGAGCCAAGACTGGTTTCCAAGGTGGGGATGGAAGAAGTTTGAAGCTGGTGAACTAGGACAACTAATGGTAGTATGTGGTATAGAGGAAAAAGATAGAGAGGCAGTAGAGAGAATGTTAAAGGTAGCTATCTGGTGTGTTCAGTGTAGGTCCGAGTTGAGGCCTTTAATGAGTGTTGCGGTGAAGATGTTGGAAGGAGAAATTGATATTCCTAGACCTTCAATTAATCCATTCCAGCACTTGATGCCAGACATTCCTATCATGGCAGCATATAGCACTAGTGCCTCCGACACGGATTCCTCTCAAACAATAACTGGATATAACAGTGTTTGTAAGACTCCCATCATGAAAAAGTATGAGATTAAAATAGCGTCTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

368

Amino Acids

40.99

Weight (kDa)

8.07

Isoelectric Point (pI)

39.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 91 - 168 2.1e-13 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 93 - 169 1.4e-11 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 174 - 232 6.6e-10 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 174 - 234 8.5e-10 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 312
Acc65I GGTACC 1 cut(s) 362
AccB1I GGYRCC 1 cut(s) 362
AccI GTMKAC 1 cut(s) 1100
AciI CCGC 3 cut(s) 39, 398, 905
AclWI GGATC 1 cut(s) 170
AcoI YGGCCR 2 cut(s) 30, 543
AcsI RAATTY 1 cut(s) 511
AfaI GTAC 3 cut(s) 364, 409, 662
AfeI AGCGCT 1 cut(s) 480
AfiI CCNNNNNNNGG 2 cut(s) 752, 885
AgsI TTSAA 2 cut(s) 770, 948
AhlI ACTAGT 1 cut(s) 1004
AjnI CCWGG 1 cut(s) 601
AjuI GAANNNNNNNTTGG 2 cut(s) 726, 758
AleI CACNNNNGTG 1 cut(s) 651
AluBI AGCT 5 cut(s) 168, 550, 666, 773, 854
AluI AGCT 5 cut(s) 168, 550, 666, 773, 854
Alw26I GTCTC 1 cut(s) 460
AlwI GGATC 1 cut(s) 170
Aor51HI AGCGCT 1 cut(s) 480
AoxI GGCC 3 cut(s) 30, 543, 887
ApeKI GCWGC 5 cut(s) 41, 53, 165, 611, 992
ApoI RAATTY 1 cut(s) 511
AseI ATTAAT 1 cut(s) 951
Asp700I GAANNNNTTC 1 cut(s) 515
Asp718I GGTACC 1 cut(s) 362
AspLEI GCGC 1 cut(s) 481
AspS9I GGNCC 1 cut(s) 876
AsuHPI GGTGA 3 cut(s) 265, 788, 919
AvaII GGWCC 1 cut(s) 876
BalI TGGCCA 1 cut(s) 545
BanI GGYRCC 1 cut(s) 362
BbvI GCAGC 5 cut(s) 28, 40, 177, 598, 1004
BccI CCATC 3 cut(s) 236, 750, 1076
BceAI ACGGC 4 cut(s) 5, 11, 17, 50
BciT130I CCWGG 1 cut(s) 603
BcoDI GTCTC 1 cut(s) 460
BcuI ACTAGT 1 cut(s) 1004
BfaI CTAG 4 cut(s) 324, 782, 939, 1005
BfoI RGCGCY 1 cut(s) 482
BisI GCNGC 6 cut(s) 39, 42, 54, 166, 612, 993
BlsI GCNGC 6 cut(s) 40, 43, 55, 167, 613, 994
Bme1390I CCNGG 1 cut(s) 603
Bme18I GGWCC 1 cut(s) 876
BmgT120I GGNCC 1 cut(s) 876
BmiI GGNNCC 2 cut(s) 364, 707
BmrFI CCNGG 1 cut(s) 603
BmsI GCATC 1 cut(s) 960
BplI GAGNNNNNCTC 2 cut(s) 583, 615
BsaBI GATNNNNATC 1 cut(s) 119
BsaJI CCNNGG 5 cut(s) 27, 85, 366, 448, 746
Bsc4I CCNNNNNNNGG 2 cut(s) 752, 885
Bse1I ACTGG 2 cut(s) 743, 1045
Bse8I GATNNNNATC 1 cut(s) 119
BseBI CCWGG 1 cut(s) 603
BseDI CCNNGG 5 cut(s) 27, 85, 366, 448, 746
BseGI GGATG 1 cut(s) 761
BseJI GATNNNNATC 1 cut(s) 119
BseLI CCNNNNNNNGG 2 cut(s) 752, 885
BseMII CTCAG 1 cut(s) 487
BseNI ACTGG 2 cut(s) 743, 1045
BseXI GCAGC 5 cut(s) 28, 40, 177, 598, 1004
BseYI CCCAGC 1 cut(s) 628
BsgI GTGCAG 1 cut(s) 597
BshFI GGCC 3 cut(s) 32, 545, 889
BshNI GGYRCC 1 cut(s) 362
BslFI GGGAC 1 cut(s) 575
BslI CCNNNNNNNGG 2 cut(s) 752, 885
BsmAI GTCTC 1 cut(s) 460
BsmFI GGGAC 1 cut(s) 575
BsmI GAATGC 1 cut(s) 678
BsnI GGCC 3 cut(s) 32, 545, 889
Bsp1407I TGTACA 1 cut(s) 660
Bsp143I GATC 1 cut(s) 175
Bsp19I CCATGG 2 cut(s) 85, 448
BspACI CCGC 3 cut(s) 39, 398, 905
BspANI GGCC 3 cut(s) 32, 545, 889
BspCNI CTCAG 1 cut(s) 486
BspHI TCATGA 1 cut(s) 1071
BspLI GGNNCC 2 cut(s) 364, 707
BspPI GGATC 1 cut(s) 170
BspT107I GGYRCC 1 cut(s) 362
BsrGI TGTACA 1 cut(s) 660
BsrI ACTGG 2 cut(s) 743, 1045
BssECI CCNNGG 5 cut(s) 27, 85, 366, 448, 746
BssMI GATC 1 cut(s) 175
BssT1I CCWWGG 3 cut(s) 85, 448, 746
Bst2UI CCWGG 1 cut(s) 603
Bst4CI ACNGT 2 cut(s) 49, 1052
BstAPI GCANNNNNTGC 1 cut(s) 970
BstAUI TGTACA 1 cut(s) 660
BstDEI CTNAG 2 cut(s) 356, 473
BstDSI CCRYGG 3 cut(s) 27, 85, 448
BstF5I GGATG 1 cut(s) 761
BstH2I RGCGCY 1 cut(s) 482
BstHHI GCGC 1 cut(s) 481
BstKTI GATC 1 cut(s) 178
BstMAI GTCTC 1 cut(s) 460
BstMBI GATC 1 cut(s) 175
BstMWI GCNNNNNNNGC 4 cut(s) 38, 50, 62, 970
BstNI CCWGG 1 cut(s) 603
BstSCI CCNGG 1 cut(s) 601
BstV1I GCAGC 5 cut(s) 28, 40, 177, 598, 1004
BstXI CCANNNNNNTGG 2 cut(s) 283, 624
BsuRI GGCC 3 cut(s) 32, 545, 889
BtgI CCRYGG 3 cut(s) 27, 85, 448
BtsCI GGATG 1 cut(s) 761
BtsI GCAGTG 2 cut(s) 15, 351
BtsIMutI CAGTG 4 cut(s) 15, 351, 875, 1057
CciI TCATGA 1 cut(s) 1071
CfoI GCGC 1 cut(s) 481
Cfr13I GGNCC 1 cut(s) 876
CseI GACGC 1 cut(s) 1086
Csp6I GTAC 3 cut(s) 363, 408, 661
CviAII CATG 6 cut(s) 86, 394, 428, 449, 988, 1072
CviQI GTAC 3 cut(s) 363, 408, 661
DdeI CTNAG 2 cut(s) 356, 473
DpnI GATC 1 cut(s) 177
DpnII GATC 1 cut(s) 175
EaeI YGGCCR 2 cut(s) 30, 543
EciI GGCGGA 1 cut(s) 413
Eco130I CCWWGG 3 cut(s) 85, 448, 746
Eco147I AGGCCT 1 cut(s) 889
Eco47I GGWCC 1 cut(s) 876
Eco47III AGCGCT 1 cut(s) 480
EcoRII CCWGG 1 cut(s) 601
EcoT14I CCWWGG 3 cut(s) 85, 448, 746
ErhI CCWWGG 3 cut(s) 85, 448, 746
FaeI CATG 6 cut(s) 89, 397, 431, 452, 991, 1075
FaqI GGGAC 1 cut(s) 575
FatI CATG 6 cut(s) 85, 393, 427, 448, 987, 1071
FblI GTMKAC 1 cut(s) 1100
Fnu4HI GCNGC 6 cut(s) 39, 42, 54, 166, 612, 993
FokI GGATG 1 cut(s) 768
Fsp4HI GCNGC 6 cut(s) 39, 42, 54, 166, 612, 993
FspBI CTAG 4 cut(s) 324, 782, 939, 1005
GlaI GCGC 1 cut(s) 480
GluI GCNGC 6 cut(s) 39, 42, 54, 166, 612, 993
GsaI CCCAGC 1 cut(s) 632
HaeII RGCGCY 1 cut(s) 482
HaeIII GGCC 3 cut(s) 32, 545, 889
HgaI GACGC 1 cut(s) 1086
HhaI GCGC 1 cut(s) 481
Hin1II CATG 6 cut(s) 89, 397, 431, 452, 991, 1075
Hin6I GCGC 1 cut(s) 479
HinP1I GCGC 1 cut(s) 479
HincII GTYRAC 1 cut(s) 433
HindII GTYRAC 1 cut(s) 433
HinfI GANTC 3 cut(s) 421, 1022, 1063
HphI GGTGA 3 cut(s) 265, 788, 919
Hpy166II GTNNAC 6 cut(s) 237, 410, 433, 661, 779, 1101
Hpy188I TCNGA 8 cut(s) 156, 172, 180, 255, 370, 476, 880, 1015
Hpy188III TCNNGA 5 cut(s) 6, 291, 685, 725, 1072
Hpy8I GTNNAC 6 cut(s) 237, 410, 433, 661, 779, 1101
Hpy99I CGWCG 1 cut(s) 150
HpyAV CCTTC 4 cut(s) 343, 696, 914, 954
HpyCH4III ACNGT 2 cut(s) 49, 1052
HpyCH4IV ACGT 1 cut(s) 148
HpyCH4V TGCA 3 cut(s) 260, 555, 614
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 50, 62, 970
HpyF3I CTNAG 2 cut(s) 356, 473
HpySE526I ACGT 1 cut(s) 148
Hsp92II CATG 6 cut(s) 89, 397, 431, 452, 991, 1075
HspAI GCGC 1 cut(s) 479
KpnI GGTACC 1 cut(s) 366
Kzo9I GATC 1 cut(s) 175
Lsp1109I GCAGC 5 cut(s) 28, 40, 177, 598, 1004
LweI GCATC 1 cut(s) 960
MaeI CTAG 4 cut(s) 324, 782, 939, 1005
MaeII ACGT 1 cut(s) 148
MaeIII GTNAC 1 cut(s) 80
MalI GATC 1 cut(s) 177
MboI GATC 1 cut(s) 175
MboII GAAGA 5 cut(s) 508, 711, 713, 772, 922
MlsI TGGCCA 1 cut(s) 545
MluCI AATT 7 cut(s) 10, 196, 378, 389, 511, 927, 948
MluNI TGGCCA 1 cut(s) 545
MlyI GAGTC 1 cut(s) 1057
MmeI TCCRAC 4 cut(s) 54, 203, 897, 1038
Mox20I TGGCCA 1 cut(s) 545
MroXI GAANNNNTTC 1 cut(s) 515
MscI TGGCCA 1 cut(s) 545
MseI TTAA 6 cut(s) 717, 845, 893, 951, 1089, 1105
MslI CAYNNNNRTG 2 cut(s) 447, 651
Msp20I TGGCCA 1 cut(s) 545
MspA1I CMGCKG 1 cut(s) 41
MspR9I CCNGG 1 cut(s) 603
Mva1269I GAATGC 1 cut(s) 678
MvaI CCWGG 1 cut(s) 603
MwoI GCNNNNNNNGC 4 cut(s) 38, 50, 62, 970
NcoI CCATGG 2 cut(s) 85, 448
NdeII GATC 1 cut(s) 175
NlaIII CATG 6 cut(s) 89, 397, 431, 452, 991, 1075
NlaIV GGNNCC 2 cut(s) 364, 707
OliI CACNNNNGTG 1 cut(s) 651
PagI TCATGA 1 cut(s) 1071
PceI AGGCCT 1 cut(s) 889
PctI GAATGC 1 cut(s) 678
PdmI GAANNNNTTC 1 cut(s) 515
PfeI GAWTC 2 cut(s) 421, 1022
PkrI GCNGC 6 cut(s) 40, 43, 55, 167, 613, 994
PleI GAGTC 1 cut(s) 1057
PpsI GAGTC 1 cut(s) 1057
PshBI ATTAAT 1 cut(s) 951
PsiI TTATAA 1 cut(s) 312
Psp6I CCWGG 1 cut(s) 601
PspFI CCCAGC 1 cut(s) 628
PspGI CCWGG 1 cut(s) 601
PspN4I GGNNCC 2 cut(s) 364, 707
PspPI GGNCC 1 cut(s) 876
RsaI GTAC 3 cut(s) 364, 409, 662
RsaNI GTAC 3 cut(s) 363, 408, 661
RseI CAYNNNNRTG 2 cut(s) 447, 651
SaqAI TTAA 6 cut(s) 717, 845, 893, 951, 1089, 1105
SatI GCNGC 6 cut(s) 39, 42, 54, 166, 612, 993
Sau3AI GATC 1 cut(s) 175
Sau96I GGNCC 1 cut(s) 876
SchI GAGTC 1 cut(s) 1057
ScrFI CCNGG 1 cut(s) 603
SfaNI GCATC 1 cut(s) 960
SinI GGWCC 1 cut(s) 876
SmiMI CAYNNNNRTG 2 cut(s) 447, 651
SpeI ACTAGT 1 cut(s) 1004
Sse9I AATT 7 cut(s) 10, 196, 378, 389, 511, 927, 948
SseBI AGGCCT 1 cut(s) 889
SsiI CCGC 3 cut(s) 39, 398, 905
SspMI CTAG 4 cut(s) 324, 782, 939, 1005
StuI AGGCCT 1 cut(s) 889
StyD4I CCNGG 1 cut(s) 601
StyI CCWWGG 3 cut(s) 85, 448, 746
TaaI ACNGT 2 cut(s) 49, 1052
TaiI ACGT 1 cut(s) 151
TaqI TCGA 2 cut(s) 5, 684
TasI AATT 7 cut(s) 10, 196, 378, 389, 511, 927, 948
TatI WGTACW 2 cut(s) 407, 660
TauI GCSGC 1 cut(s) 41
TfiI GAWTC 2 cut(s) 421, 1022
Tru1I TTAA 6 cut(s) 717, 845, 893, 951, 1089, 1105
Tru9I TTAA 6 cut(s) 717, 845, 893, 951, 1089, 1105
TscAI CASTG 4 cut(s) 22, 351, 875, 1057
TseI GCWGC 5 cut(s) 41, 53, 165, 611, 992
TspDTI ATGAA 4 cut(s) 382, 413, 431, 1088
TspGWI ACGGA 1 cut(s) 1034
TspRI CASTG 4 cut(s) 22, 351, 875, 1057
VpaK11BI GGWCC 1 cut(s) 876
VspI ATTAAT 1 cut(s) 951
XapI RAATTY 1 cut(s) 511
XcmI CCANNNNNNNNNTGG 1 cut(s) 753
XmiI GTMKAC 1 cut(s) 1100
XmnI GAANNNNTTC 1 cut(s) 515
XspI CTAG 4 cut(s) 324, 782, 939, 1005
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.