Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0005206

Physical Location & Seq

Genomic Coordinates Reverse (-)

8522036 .. 8523700

Gene Structure 1665 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027113

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGGATCAGAAGCGTTTGGCTGCTACAAGCGACTGACGGAAACTAATGGTAGGGTGCAATCCGCTGCGACCTATAGATTAGGAAGAGGATGTGGCTCAAAGCCGGCTGGGATGGTTGCGAGGCTGGTTATAGCGGCGGGTGGACGGATTTATAGGATCCGTTCTGGTGGAGATCTCGTAGTCTGGCTCGATTGGGTCGTTGGCGAGGTGGTCAACAGTTTGCTACGGCGATGGCGACTTTGGTGGATGTCAATGGTGGCAGCGATTTCGATGTCTGCCAGTTGGTGGCGGCGATGGAGTTTTTGGGTCGTGGTGCTGGTATCTGATCGTCATCAACGCTTCAGGGCTGGGCCGGAGCAGTGCAGCAGCCACATTGAAGCTCCGAGGATTTGTGATCATGATGTGATGGGCGGGCAAAATGATCAATTCTCAACTCAGCTCAGCTCAACTAGTTCTGGTCTCACTCTCCTGTCCAACTTCGGAAGCCTAGATCAACAAATCAGACGAGTATACTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

173

Amino Acids

19.44

Weight (kDa)

10.13

Isoelectric Point (pI)

54.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005206)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0325921
rosa_laevigata	RLG00000013895 RLG00000016549 RLG00000027113
rosa_multiflora	Rmu_co8145310.1_g000001 Rmu_sc0003683.1_g000004 Rmu_sc0013657.1_g000015
rosa_roxburghii	Rroxscaffold_4G00309930
rosa_rugosa	Rorug04G0112300
rosa_samantha	Rh1AG072200 Rh1AG072500 Rh1BG155700 Rh1BG323700 Rh1CG174700 Rh1CG336900 Rh1CG339700 Rh1DG076500 Rh1DG076900 Rh1DG103000 Rh1DG187300 Rh1DG347100 Rh1DG349600 Rh1DG350900 Rh1DG354300 Rh1DG356800 Rh4AG068100 Rh4AG068200 Rh4BG066600 Rh4CG073800 Rh4DG063600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	285
AccI	GTMKAC	1 cut(s)	510
AciI	CCGC	5 cut(s)	63, 134, 137, 289, 411
AclWI	GGATC	3 cut(s)	13, 151, 164
AcuI	CTGAAG	1 cut(s)	325
AfiI	CCNNNNNNNGG	1 cut(s)	285
AgsI	TTSAA	1 cut(s)	377
AhlI	ACTAGT	1 cut(s)	449
AluBI	AGCT	3 cut(s)	380, 439, 444
AluI	AGCT	3 cut(s)	380, 439, 444
Alw26I	GTCTC	1 cut(s)	464
AlwI	GGATC	3 cut(s)	13, 151, 164
AoxI	GGCC	1 cut(s)	350
ApeKI	GCWGC	5 cut(s)	21, 65, 260, 363, 366
AspS9I	GGNCC	1 cut(s)	350
BamHI	GGATCC	1 cut(s)	156
BbvI	GCAGC	5 cut(s)	8, 52, 272, 375, 378
BccI	CCATC	4 cut(s)	106, 225, 288, 400
BceAI	ACGGC	1 cut(s)	242
BcgI	CGANNNNNNTGC	2 cut(s)	249, 283
BclI	TGATCA	2 cut(s)	394, 421
BcoDI	GTCTC	1 cut(s)	464
BcuI	ACTAGT	1 cut(s)	449
BfaI	CTAG	2 cut(s)	450, 488
BfmI	CTRYAG	1 cut(s)	73
BglII	AGATCT	1 cut(s)	172
BisI	GCNGC	7 cut(s)	22, 66, 135, 261, 290, 364, 367
BlpI	GCTNAGC	1 cut(s)	440
BlsI	GCNGC	7 cut(s)	23, 67, 136, 262, 291, 365, 368
BmgT120I	GGNCC	1 cut(s)	350
BmiI	GGNNCC	1 cut(s)	158
Bpu1102I	GCTNAGC	1 cut(s)	440
BsaBI	GATNNNNATC	1 cut(s)	330
BsaI	GGTCTC	1 cut(s)	464
BsaJI	CCNNGG	1 cut(s)	383
BsaXI	ACNNNNNCTCC	2 cut(s)	162, 192
Bsc4I	CCNNNNNNNGG	1 cut(s)	285
Bse118I	RCCGGY	1 cut(s)	103
Bse1I	ACTGG	1 cut(s)	279
Bse8I	GATNNNNATC	1 cut(s)	330
BseDI	CCNNGG	1 cut(s)	383
BseGI	GGATG	3 cut(s)	95, 117, 252
BseJI	GATNNNNATC	1 cut(s)	330
BseLI	CCNNNNNNNGG	1 cut(s)	285
BseMII	CTCAG	2 cut(s)	449, 454
BseNI	ACTGG	1 cut(s)	279
BseXI	GCAGC	5 cut(s)	8, 52, 272, 375, 378
BseYI	CCCAGC	2 cut(s)	107, 347
BsgI	GTGCAG	1 cut(s)	382
BshFI	GGCC	1 cut(s)	352
BsiSI	CCGG	2 cut(s)	104, 353
BslI	CCNNNNNNNGG	1 cut(s)	285
BsmAI	GTCTC	1 cut(s)	464
BsnI	GGCC	1 cut(s)	352
Bso31I	GGTCTC	1 cut(s)	464
Bsp143I	GATC	7 cut(s)	5, 156, 172, 325, 394, 421, 490
Bsp1720I	GCTNAGC	1 cut(s)	440
BspACI	CCGC	5 cut(s)	63, 134, 137, 289, 411
BspANI	GGCC	1 cut(s)	352
BspCNI	CTCAG	2 cut(s)	448, 453
BspHI	TCATGA	1 cut(s)	397
BspLI	GGNNCC	1 cut(s)	158
BspPI	GGATC	3 cut(s)	13, 151, 164
BspTNI	GGTCTC	1 cut(s)	464
BsrFI	RCCGGY	1 cut(s)	103
BsrI	ACTGG	1 cut(s)	279
BssAI	RCCGGY	1 cut(s)	103
BssECI	CCNNGG	1 cut(s)	383
BssMI	GATC	7 cut(s)	5, 156, 172, 325, 394, 421, 490
BssNAI	GTATAC	1 cut(s)	511
Bst1107I	GTATAC	1 cut(s)	511
Bst4CI	ACNGT	1 cut(s)	218
Bst6I	CTCTTC	1 cut(s)	79
BstC8I	GCNNGC	2 cut(s)	105, 413
BstDEI	CTNAG	2 cut(s)	435, 440
BstF5I	GGATG	3 cut(s)	95, 117, 252
BstKTI	GATC	7 cut(s)	8, 159, 175, 328, 397, 424, 493
BstMAI	GTCTC	1 cut(s)	464
BstMBI	GATC	7 cut(s)	5, 156, 172, 325, 394, 421, 490
BstSFI	CTRYAG	1 cut(s)	73
BstV1I	GCAGC	5 cut(s)	8, 52, 272, 375, 378
BstX2I	RGATCY	2 cut(s)	156, 172
BstYI	RGATCY	2 cut(s)	156, 172
BstZ17I	GTATAC	1 cut(s)	511
BsuRI	GGCC	1 cut(s)	352
BtgZI	GCGATG	2 cut(s)	244, 307
BtsCI	GGATG	3 cut(s)	95, 117, 252
BtsI	GCAGTG	1 cut(s)	365
BtsIMutI	CAGTG	1 cut(s)	365
Cac8I	GCNNGC	2 cut(s)	105, 413
CciI	TCATGA	1 cut(s)	397
Cfr10I	RCCGGY	1 cut(s)	103
Cfr13I	GGNCC	1 cut(s)	350
CviAII	CATG	1 cut(s)	398
DdeI	CTNAG	2 cut(s)	435, 440
DpnI	GATC	7 cut(s)	7, 158, 174, 327, 396, 423, 492
DpnII	GATC	7 cut(s)	5, 156, 172, 325, 394, 421, 490
Eam1104I	CTCTTC	1 cut(s)	79
EarI	CTCTTC	1 cut(s)	79
Eco31I	GGTCTC	1 cut(s)	464
Eco57I	CTGAAG	1 cut(s)	325
FaeI	CATG	1 cut(s)	401
FaiI	YATR	5 cut(s)	75, 131, 153, 399, 511
FatI	CATG	1 cut(s)	397
FauI	CCCGC	2 cut(s)	130, 404
FbaI	TGATCA	2 cut(s)	394, 421
FblI	GTMKAC	1 cut(s)	510
Fnu4HI	GCNGC	7 cut(s)	22, 66, 135, 261, 290, 364, 367
FokI	GGATG	3 cut(s)	102, 124, 259
Fsp4HI	GCNGC	7 cut(s)	22, 66, 135, 261, 290, 364, 367
FspBI	CTAG	2 cut(s)	450, 488
GluI	GCNGC	7 cut(s)	22, 66, 135, 261, 290, 364, 367
GsaI	CCCAGC	2 cut(s)	111, 351
HaeIII	GGCC	1 cut(s)	352
HapII	CCGG	2 cut(s)	104, 353
Hin1II	CATG	1 cut(s)	401
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HpaII	CCGG	2 cut(s)	104, 353
Hpy166II	GTNNAC	3 cut(s)	143, 214, 511
Hpy188I	TCNGA	5 cut(s)	10, 325, 384, 482, 503
Hpy188III	TCNNGA	1 cut(s)	398
Hpy8I	GTNNAC	3 cut(s)	143, 214, 511
HpyCH4III	ACNGT	1 cut(s)	218
HpyCH4V	TGCA	2 cut(s)	58, 363
HpyF3I	CTNAG	2 cut(s)	435, 440
Hsp92II	CATG	1 cut(s)	401
KroI	GCCGGC	1 cut(s)	103
KroNI	GCCGGC	1 cut(s)	105
Ksp22I	TGATCA	2 cut(s)	394, 421
Kzo9I	GATC	7 cut(s)	5, 156, 172, 325, 394, 421, 490
LmnI	GCTCC	2 cut(s)	355, 385
Lsp1109I	GCAGC	5 cut(s)	8, 52, 272, 375, 378
MaeI	CTAG	2 cut(s)	450, 488
MalI	GATC	7 cut(s)	7, 158, 174, 327, 396, 423, 492
MboI	GATC	7 cut(s)	5, 156, 172, 325, 394, 421, 490
MboII	GAAGA	1 cut(s)	96
MflI	RGATCY	2 cut(s)	156, 172
MluCI	AATT	1 cut(s)	425
MmeI	TCCRAC	1 cut(s)	498
MnlI	CCTC	4 cut(s)	80, 114, 199, 378
MroNI	GCCGGC	1 cut(s)	103
MspA1I	CMGCKG	1 cut(s)	65
MspI	CCGG	2 cut(s)	104, 353
NaeI	GCCGGC	1 cut(s)	105
NdeII	GATC	7 cut(s)	5, 156, 172, 325, 394, 421, 490
NgoMIV	GCCGGC	1 cut(s)	103
NlaIII	CATG	1 cut(s)	401
NlaIV	GGNNCC	1 cut(s)	158
PagI	TCATGA	1 cut(s)	397
PcsI	WCGNNNNNNNCGW	2 cut(s)	195, 232
PdiI	GCCGGC	1 cut(s)	105
PflMI	CCANNNNNTGG	1 cut(s)	285
PkrI	GCNGC	7 cut(s)	23, 67, 136, 262, 291, 365, 368
PspFI	CCCAGC	2 cut(s)	107, 347
PspN4I	GGNNCC	1 cut(s)	158
PspPI	GGNCC	1 cut(s)	350
PsuI	RGATCY	2 cut(s)	156, 172
SatI	GCNGC	7 cut(s)	22, 66, 135, 261, 290, 364, 367
Sau3AI	GATC	7 cut(s)	5, 156, 172, 325, 394, 421, 490
Sau96I	GGNCC	1 cut(s)	350
SetI	ASST	5 cut(s)	74, 210, 382, 441, 446
SfcI	CTRYAG	1 cut(s)	73
SpeI	ACTAGT	1 cut(s)	449
Sse9I	AATT	1 cut(s)	425
SsiI	CCGC	5 cut(s)	63, 134, 137, 289, 411
SspMI	CTAG	2 cut(s)	450, 488
TaaI	ACNGT	1 cut(s)	218
TaqI	TCGA	2 cut(s)	189, 269
TasI	AATT	1 cut(s)	425
TauI	GCSGC	2 cut(s)	137, 292
TscAI	CASTG	1 cut(s)	365
TseI	GCWGC	5 cut(s)	21, 65, 260, 363, 366
TspGWI	ACGGA	3 cut(s)	53, 149, 160
TspRI	CASTG	1 cut(s)	365
Van91I	CCANNNNNTGG	1 cut(s)	285
XmiI	GTMKAC	1 cut(s)	510
XspI	CTAG	2 cut(s)	450, 488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.