Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0005206

Physical Location & Seq

Genomic Coordinates Reverse (-)

37550708 .. 37567175

Gene Structure 16468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG187300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGCTCTTCGATGGTTTCTCCTTCTCAGCCTCATTAGCAGTATTCTACTTCTTGTTCATGTTACTCACTTAGCTGCTCGGGATGACCGGAAGGCTTATATTGTGTATATGGGCGACAAGCCAAAGAACGGGGTGCCAGTAACACCTGATCTTCATGTGAATATTCTACGAGACGTAGTTGACAACAACATTAATAATGATATTGCACATGAAGCTCTGCTTCTTCACAGCTACAAGAGAAGTTTCCATGGATTTGCTGCAATGCTCACAGAACAAGAAGCACAAAAACTGGCTGCTGCTCAGGATGCCCGAAAGGCTTATATTGTGTATATGGGCGACAAGCCAAAGAACGGGGTGCCAGTAACACCTGATCTTCATGTGAATATTCTAAGAGACGTAGTTGACAACAACATTAATAATGATATTGCACATGAAGCTCTTCTTCTTCACAGCTACAACAGAAGCTTCCATGGATTTGCTGCAATGCTCACAGAACAAGAAGCACAAAAACTGGCTGGGACTCCATCTGCTGGTCCAATTTGCGTCTCTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 Peptidase_S8

Protein Analysis

184

Amino Acids

20.46

Weight (kDa)

6.54

Isoelectric Point (pI)

41.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I9	PF05922	33 - 101	7.8e-11	Peptidase inhibitor I9
Inhibitor_I9	PF05922	107 - 175	1.2e-10	Peptidase inhibitor I9

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005206)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0325921
rosa_laevigata	RLG00000013895 RLG00000016549 RLG00000027113
rosa_multiflora	Rmu_co8145310.1_g000001 Rmu_sc0003683.1_g000004 Rmu_sc0013657.1_g000015
rosa_roxburghii	Rroxscaffold_4G00309930
rosa_rugosa	Rorug04G0112300
rosa_samantha	Rh1AG072200 Rh1AG072500 Rh1BG155700 Rh1BG323700 Rh1CG174700 Rh1CG336900 Rh1CG339700 Rh1DG076500 Rh1DG076900 Rh1DG103000 Rh1DG187300 Rh1DG347100 Rh1DG349600 Rh1DG350900 Rh1DG354300 Rh1DG356800 Rh4AG068100 Rh4AG068200 Rh4BG066600 Rh4CG073800 Rh4DG063600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	133, 355
AccB7I	CCANNNNNTGG	1 cut(s)	530
AfiI	CCNNNNNNNGG	3 cut(s)	128, 350, 530
AluBI	AGCT	6 cut(s)	74, 215, 231, 437, 453, 465
AluI	AGCT	6 cut(s)	74, 215, 231, 437, 453, 465
Alw26I	GTCTC	3 cut(s)	165, 387, 550
Ama87I	CYCGRG	1 cut(s)	78
ApeKI	GCWGC	5 cut(s)	74, 257, 293, 296, 479
AseI	ATTAAT	2 cut(s)	192, 414
Asp700I	GAANNNNTTC	1 cut(s)	438
AspS9I	GGNCC	1 cut(s)	533
AvaI	CYCGRG	1 cut(s)	78
AvaII	GGWCC	1 cut(s)	533
BanI	GGYRCC	2 cut(s)	133, 355
BbvI	GCAGC	5 cut(s)	61, 244, 280, 283, 466
BccI	CCATC	2 cut(s)	6, 532
BcoDI	GTCTC	3 cut(s)	165, 387, 550
BglI	GCCNNNNNGGC	1 cut(s)	314
BisI	GCNGC	5 cut(s)	75, 258, 294, 297, 480
BlsI	GCNGC	5 cut(s)	76, 259, 295, 298, 481
Bme18I	GGWCC	1 cut(s)	533
BmeT110I	CYCGRG	1 cut(s)	78
BmgT120I	GGNCC	1 cut(s)	533
BmiI	GGNNCC	2 cut(s)	135, 357
BmsI	GCATC	1 cut(s)	295
Bpu10I	CCTNAGC	1 cut(s)	300
BsaJI	CCNNGG	2 cut(s)	247, 469
BsaWI	WCCGGW	1 cut(s)	87
Bsc4I	CCNNNNNNNGG	3 cut(s)	128, 350, 530
Bse1I	ACTGG	4 cut(s)	137, 294, 359, 516
Bse3DI	GCAATG	2 cut(s)	267, 489
BseDI	CCNNGG	2 cut(s)	247, 469
BseGI	GGATG	2 cut(s)	88, 310
BseLI	CCNNNNNNNGG	3 cut(s)	128, 350, 530
BseMI	GCAATG	2 cut(s)	267, 489
BseMII	CTCAG	2 cut(s)	40, 314
BseNI	ACTGG	4 cut(s)	137, 294, 359, 516
BseXI	GCAGC	5 cut(s)	61, 244, 280, 283, 466
BseYI	CCCAGC	1 cut(s)	515
BshNI	GGYRCC	2 cut(s)	133, 355
BsiHKCI	CYCGRG	1 cut(s)	78
BsiSI	CCGG	1 cut(s)	88
BslFI	GGGAC	1 cut(s)	532
BslI	CCNNNNNNNGG	3 cut(s)	128, 350, 530
BsmAI	GTCTC	3 cut(s)	165, 387, 550
BsmBI	CGTCTC	3 cut(s)	165, 387, 550
BsmFI	GGGAC	1 cut(s)	532
BsoBI	CYCGRG	1 cut(s)	78
Bsp143I	GATC	2 cut(s)	148, 370
Bsp19I	CCATGG	2 cut(s)	247, 469
BspCNI	CTCAG	2 cut(s)	39, 313
BspLI	GGNNCC	2 cut(s)	135, 357
BspQI	GCTCTTC	2 cut(s)	12, 444
BspT107I	GGYRCC	2 cut(s)	133, 355
BsrDI	GCAATG	2 cut(s)	267, 489
BsrI	ACTGG	4 cut(s)	137, 294, 359, 516
BssECI	CCNNGG	2 cut(s)	247, 469
BssMI	GATC	2 cut(s)	148, 370
BssT1I	CCWWGG	2 cut(s)	247, 469
Bst6I	CTCTTC	2 cut(s)	12, 444
BstDEI	CTNAG	4 cut(s)	26, 70, 300, 389
BstDSI	CCRYGG	2 cut(s)	247, 469
BstF5I	GGATG	2 cut(s)	88, 310
BstKTI	GATC	2 cut(s)	151, 373
BstMAI	GTCTC	3 cut(s)	165, 387, 550
BstMBI	GATC	2 cut(s)	148, 370
BstMWI	GCNNNNNNNGC	5 cut(s)	36, 212, 305, 314, 434
BstV1I	GCAGC	5 cut(s)	61, 244, 280, 283, 466
BtgI	CCRYGG	2 cut(s)	247, 469
BtsCI	GGATG	2 cut(s)	88, 310
Cfr13I	GGNCC	1 cut(s)	533
CseI	GACGC	1 cut(s)	532
CviAII	CATG	7 cut(s)	59, 155, 209, 248, 377, 431, 470
DdeI	CTNAG	4 cut(s)	26, 70, 300, 389
DpnI	GATC	2 cut(s)	150, 372
DpnII	GATC	2 cut(s)	148, 370
Eam1104I	CTCTTC	2 cut(s)	12, 444
EarI	CTCTTC	2 cut(s)	12, 444
Eco130I	CCWWGG	2 cut(s)	247, 469
Eco47I	GGWCC	1 cut(s)	533
Eco88I	CYCGRG	1 cut(s)	78
EcoT14I	CCWWGG	2 cut(s)	247, 469
ErhI	CCWWGG	2 cut(s)	247, 469
Esp3I	CGTCTC	3 cut(s)	165, 387, 550
FaeI	CATG	7 cut(s)	62, 158, 212, 251, 380, 434, 473
FalI	AAGNNNNNCTT	4 cut(s)	204, 236, 426, 458
FaqI	GGGAC	1 cut(s)	532
FatI	CATG	7 cut(s)	58, 154, 208, 247, 376, 430, 469
Fnu4HI	GCNGC	5 cut(s)	75, 258, 294, 297, 480
FokI	GGATG	2 cut(s)	95, 317
Fsp4HI	GCNGC	5 cut(s)	75, 258, 294, 297, 480
GluI	GCNGC	5 cut(s)	75, 258, 294, 297, 480
GsaI	CCCAGC	1 cut(s)	519
HapII	CCGG	1 cut(s)	88
HgaI	GACGC	1 cut(s)	532
Hin1II	CATG	7 cut(s)	62, 158, 212, 251, 380, 434, 473
HincII	GTYRAC	2 cut(s)	181, 403
HindII	GTYRAC	2 cut(s)	181, 403
HindIII	AAGCTT	1 cut(s)	463
HinfI	GANTC	1 cut(s)	520
HpaII	CCGG	1 cut(s)	88
Hpy166II	GTNNAC	2 cut(s)	181, 403
Hpy188III	TCNNGA	2 cut(s)	80, 302
Hpy8I	GTNNAC	2 cut(s)	181, 403
HpyAV	CCTTC	2 cut(s)	32, 85
HpyCH4IV	ACGT	2 cut(s)	174, 396
HpyCH4V	TGCA	4 cut(s)	206, 260, 428, 482
HpyF10VI	GCNNNNNNNGC	5 cut(s)	36, 212, 305, 314, 434
HpyF3I	CTNAG	4 cut(s)	26, 70, 300, 389
HpySE526I	ACGT	2 cut(s)	174, 396
Hsp92II	CATG	7 cut(s)	62, 158, 212, 251, 380, 434, 473
Kzo9I	GATC	2 cut(s)	148, 370
LguI	GCTCTTC	2 cut(s)	12, 444
Lsp1109I	GCAGC	5 cut(s)	61, 244, 280, 283, 466
LweI	GCATC	1 cut(s)	295
MaeII	ACGT	2 cut(s)	174, 396
MaeIII	GTNAC	3 cut(s)	61, 139, 361
MalI	GATC	2 cut(s)	150, 372
MboI	GATC	2 cut(s)	148, 370
MboII	GAAGA	6 cut(s)	143, 215, 365, 431, 434, 437
MluCI	AATT	1 cut(s)	537
MlyI	GAGTC	1 cut(s)	514
MnlI	CCTC	1 cut(s)	41
MroXI	GAANNNNTTC	1 cut(s)	438
MseI	TTAA	3 cut(s)	192, 414, 553
MspI	CCGG	1 cut(s)	88
MwoI	GCNNNNNNNGC	5 cut(s)	36, 212, 305, 314, 434
NcoI	CCATGG	2 cut(s)	247, 469
NdeII	GATC	2 cut(s)	148, 370
NlaIII	CATG	7 cut(s)	62, 158, 212, 251, 380, 434, 473
NlaIV	GGNNCC	2 cut(s)	135, 357
PciSI	GCTCTTC	2 cut(s)	12, 444
PdmI	GAANNNNTTC	1 cut(s)	438
PflMI	CCANNNNNTGG	1 cut(s)	530
PkrI	GCNGC	5 cut(s)	76, 259, 295, 298, 481
PleI	GAGTC	1 cut(s)	514
PpsI	GAGTC	1 cut(s)	514
PshBI	ATTAAT	2 cut(s)	192, 414
PspFI	CCCAGC	1 cut(s)	515
PspN4I	GGNNCC	2 cut(s)	135, 357
PspPI	GGNCC	1 cut(s)	533
SapI	GCTCTTC	2 cut(s)	12, 444
SaqAI	TTAA	3 cut(s)	192, 414, 553
SatI	GCNGC	5 cut(s)	75, 258, 294, 297, 480
Sau3AI	GATC	2 cut(s)	148, 370
Sau96I	GGNCC	1 cut(s)	533
SchI	GAGTC	1 cut(s)	514
SfaNI	GCATC	1 cut(s)	295
SinI	GGWCC	1 cut(s)	533
Sse9I	AATT	1 cut(s)	537
SspI	AATATT	2 cut(s)	163, 385
StyI	CCWWGG	2 cut(s)	247, 469
TaiI	ACGT	2 cut(s)	177, 399
TaqI	TCGA	1 cut(s)	10
TasI	AATT	1 cut(s)	537
Tru1I	TTAA	3 cut(s)	192, 414, 553
Tru9I	TTAA	3 cut(s)	192, 414, 553
TseI	GCWGC	5 cut(s)	74, 257, 293, 296, 479
TspDTI	ATGAA	5 cut(s)	47, 143, 225, 365, 447
Van91I	CCANNNNNTGG	1 cut(s)	530
VpaK11BI	GGWCC	1 cut(s)	533
VspI	ATTAAT	2 cut(s)	192, 414
XmnI	GAANNNNTTC	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.