Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000855.1

Orthogroup ID

OG0002921

Physical Location & Seq

Genomic Coordinates Forward (+)

36960 .. 39930

Gene Structure 2971 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

atgctatcaccgccacctctagatacctccacgattgaagagctccaatgtcgcccgtcctgtgaccacggaaagatgagtcgtgagtcgcgcacgcgattgggaagaggaggaggttgggtgttaaaagatgagggtgggagatcaagaggtagagacagaggatggggctgtcgtggcggtggcgactgctctagcaaagatagagttgatgcatttggtatattattgacacatatattgcgccatatggcttctgagttgaattttgatatgcagagtgatggatttgtgaaggttcatgatcatttagagctaaacttgaagacatttgctaatattccattgagctcacatagtgttgatgaaaataaggaggttgtcagaaaggacaataagcaacgttttagcctcttggaagaaaatgggaaacttttgatacgtgcaaaccaaggccactcaacaacggacttcatccccgacaaaatgatcctccaaattcgcccaatcccacttcgacgtcttggtacctgtaatgggctccagcttccggtgaaagacgtttctctcataaagaagaccggcaaaaggtgggcaagaggggcggcggttggtgaagttggttggaggagggctctgattgggattgggggcggtaactgtcatcgggatgagctggcgttcgaggctgaaatcagaattctcgacaaggacgtaggagcggaggaggctggggcagaagacggcgagcttgtggagggagggccagccaccgaaaggctcgaaggaggcagcagagacaagatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000215 GO:0000394 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0051604 GO:0071704 GO:0090304 GO:0097428 GO:0106035 GO:0140098 GO:0140101 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

PTS_2-RNA

Protein Analysis

269

Amino Acids

29.64

Weight (kDa)

7.68

Isoelectric Point (pI)

52.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTS_2-RNA	PF01885	76 - 158	2.6e-17	RNA 2'-phosphotransferase, Tpt1 / KptA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45330 AT2G45330 AT5G23600
fragaria_vesca	FvH4_7g11590 FvH4_7g11590 FvH4_7g11590
malus_domestica	MD07G1120400.v1.1
prunus_persica	Prupe.2G143900_v2.0.a1 Prupe.2G143900_v2.0.a1 Prupe.2G143900_v2.0.a1
pyrus_communis	pycom02g16790 pycom02g16820
rosa_chinensis	RchiOBHm_Chr1g0350011 RchiOBHm_Chr7g0199321
rosa_laevigata	RLG00000003800 RLG00000013131 RLG00000028505
rosa_multiflora	Rmu_sc0000855.1_g000007 Rmu_sc0000855.1_g000008 Rmu_sc0003674.1_g000015 Rmu_sc0005220.1_g000003
rosa_roxburghii	Rroxscaffold_3G00256780 Rroxscaffold_3G00256830 Rroxscaffold_4G00305120 Rroxscaffold_4G00305200
rosa_rugosa	Rorug01G0208000
rosa_samantha	Rh1AG224300 Rh1BG191600 Rh1CG209000 Rh1DG220100 Rh6CG241400 Rh7BG181500 Rh7BG181800 Rh7CG187100 Rh7DG181100
rosa_wichuraiana	Rw1G019160 Rw1G019280 Rw7G015660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	523
Acc65I	GGTACC	1 cut(s)	527
AccB1I	GGYRCC	1 cut(s)	527
AccBSI	CCGCTC	1 cut(s)	722
AccII	CGCG	2 cut(s)	91, 97
AciI	CCGC	6 cut(s)	11, 180, 605, 608, 654, 722
AclI	AACGTT	1 cut(s)	403
AclWI	GGATC	1 cut(s)	484
AcsI	RAATTY	3 cut(s)	265, 498, 699
AcyI	GRCGYC	1 cut(s)	520
AdeI	CACNNNGTG	1 cut(s)	359
AfaI	GTAC	1 cut(s)	529
AfiI	CCNNNNNNNGG	4 cut(s)	537, 550, 588, 777
AgsI	TTSAA	3 cut(s)	38, 265, 325
AluBI	AGCT	6 cut(s)	43, 316, 351, 547, 676, 751
AluI	AGCT	6 cut(s)	43, 316, 351, 547, 676, 751
Alw21I	GWGCWC	2 cut(s)	45, 353
Alw26I	GTCTC	2 cut(s)	150, 792
AlwI	GGATC	1 cut(s)	484
AoxI	GGCC	2 cut(s)	454, 764
ApeKI	GCWGC	1 cut(s)	792
ApoI	RAATTY	3 cut(s)	265, 498, 699
Asp718I	GGTACC	1 cut(s)	527
AspLEI	GCGC	2 cut(s)	93, 246
AspS9I	GGNCC	1 cut(s)	764
AsuHPI	GGTGA	2 cut(s)	565, 626
BanI	GGYRCC	1 cut(s)	527
BanII	GRGCYC	4 cut(s)	45, 353, 543, 637
BbsI	GAAGAC	3 cut(s)	332, 584, 747
Bbv12I	GWGCWC	2 cut(s)	45, 353
BbvI	GCAGC	1 cut(s)	804
BccI	CCATC	2 cut(s)	159, 278
BceAI	ACGGC	1 cut(s)	760
BclI	TGATCA	1 cut(s)	304
BcoDI	GTCTC	2 cut(s)	150, 792
BfaI	CTAG	2 cut(s)	20, 195
BglII	AGATCT	1 cut(s)	804
BisI	GCNGC	2 cut(s)	606, 793
BlsI	GCNGC	2 cut(s)	607, 794
BmgT120I	GGNCC	1 cut(s)	764
BmiI	GGNNCC	2 cut(s)	529, 542
BmsI	GCATC	1 cut(s)	202
BpiI	GAAGAC	3 cut(s)	332, 584, 747
BplI	GAGNNNNNCTC	2 cut(s)	619, 651
BpmI	CTGGAG	1 cut(s)	527
BsaAI	YACGTR	1 cut(s)	443
BsaHI	GRCGYC	1 cut(s)	520
BsaJI	CCNNGG	2 cut(s)	67, 451
BsaWI	WCCGGW	1 cut(s)	550
BsaXI	ACNNNNNCTCC	2 cut(s)	105, 135
Bsc4I	CCNNNNNNNGG	4 cut(s)	537, 550, 588, 777
Bse118I	RCCGGY	1 cut(s)	581
BseDI	CCNNGG	2 cut(s)	67, 451
BseGI	GGATG	3 cut(s)	170, 474, 676
BseLI	CCNNNNNNNGG	4 cut(s)	537, 550, 588, 777
BseMII	CTCAG	1 cut(s)	249
BseRI	GAGGAG	4 cut(s)	123, 126, 643, 740
BseXI	GCAGC	1 cut(s)	804
BseYI	CCCAGC	1 cut(s)	731
Bsh1236I	CGCG	2 cut(s)	91, 97
BshFI	GGCC	2 cut(s)	456, 766
BshNI	GGYRCC	1 cut(s)	527
BsiHKAI	GWGCWC	2 cut(s)	45, 353
BsiSI	CCGG	2 cut(s)	551, 582
BslI	CCNNNNNNNGG	4 cut(s)	537, 550, 588, 777
BsmAI	GTCTC	2 cut(s)	150, 792
BsnI	GGCC	2 cut(s)	456, 766
Bsp1286I	GDGCHC	4 cut(s)	45, 353, 543, 637
Bsp143I	GATC	4 cut(s)	143, 304, 489, 804
BspACI	CCGC	6 cut(s)	11, 180, 605, 608, 654, 722
BspANI	GGCC	2 cut(s)	456, 766
BspCNI	CTCAG	1 cut(s)	250
BspFNI	CGCG	2 cut(s)	91, 97
BspHI	TCATGA	1 cut(s)	301
BspLI	GGNNCC	2 cut(s)	529, 542
BspPI	GGATC	1 cut(s)	484
BspQI	GCTCTTC	1 cut(s)	33
BspT107I	GGYRCC	1 cut(s)	527
BsrBI	CCGCTC	1 cut(s)	722
BsrFI	RCCGGY	1 cut(s)	581
BssAI	RCCGGY	1 cut(s)	581
BssECI	CCNNGG	2 cut(s)	67, 451
BssMI	GATC	4 cut(s)	143, 304, 489, 804
BssNI	GRCGYC	1 cut(s)	520
BssT1I	CCWWGG	1 cut(s)	451
Bst4CI	ACNGT	1 cut(s)	662
Bst6I	CTCTTC	2 cut(s)	33, 100
BstACI	GRCGYC	1 cut(s)	520
BstBAI	YACGTR	1 cut(s)	443
BstC8I	GCNNGC	4 cut(s)	95, 678, 749, 768
BstDEI	CTNAG	1 cut(s)	258
BstDSI	CCRYGG	1 cut(s)	67
BstF5I	GGATG	3 cut(s)	170, 474, 676
BstFNI	CGCG	2 cut(s)	91, 97
BstHHI	GCGC	2 cut(s)	93, 246
BstKTI	GATC	4 cut(s)	146, 307, 492, 807
BstMAI	GTCTC	2 cut(s)	150, 792
BstMBI	GATC	4 cut(s)	143, 304, 489, 804
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 177, 602, 686, 728
BstUI	CGCG	2 cut(s)	91, 97
BstV1I	GCAGC	1 cut(s)	804
BstV2I	GAAGAC	3 cut(s)	332, 584, 747
BstX2I	RGATCY	1 cut(s)	804
BstYI	RGATCY	1 cut(s)	804
BsuRI	GGCC	2 cut(s)	456, 766
BtgI	CCRYGG	1 cut(s)	67
BtsCI	GGATG	3 cut(s)	170, 474, 676
Cac8I	GCNNGC	4 cut(s)	95, 678, 749, 768
CciI	TCATGA	1 cut(s)	301
CfoI	GCGC	2 cut(s)	93, 246
Cfr10I	RCCGGY	1 cut(s)	581
Cfr13I	GGNCC	1 cut(s)	764
Csp6I	GTAC	1 cut(s)	528
CviAII	CATG	1 cut(s)	302
CviQI	GTAC	1 cut(s)	528
DdeI	CTNAG	1 cut(s)	258
DpnI	GATC	4 cut(s)	145, 306, 491, 806
DpnII	GATC	4 cut(s)	143, 304, 489, 804
DraIII	CACNNNGTG	1 cut(s)	359
Eam1104I	CTCTTC	2 cut(s)	33, 100
EarI	CTCTTC	2 cut(s)	33, 100
Ecl136II	GAGCTC	2 cut(s)	43, 351
Eco130I	CCWWGG	1 cut(s)	451
Eco24I	GRGCYC	4 cut(s)	45, 353, 543, 637
Eco53kI	GAGCTC	2 cut(s)	43, 351
EcoICRI	GAGCTC	2 cut(s)	43, 351
EcoRI	GAATTC	1 cut(s)	699
EcoT14I	CCWWGG	1 cut(s)	451
EcoT22I	ATGCAT	1 cut(s)	217
EcoT38I	GRGCYC	4 cut(s)	45, 353, 543, 637
ErhI	CCWWGG	1 cut(s)	451
FaeI	CATG	1 cut(s)	305
FaiI	YATR	9 cut(s)	224, 237, 239, 249, 251, 275, 303, 357, 572
FatI	CATG	1 cut(s)	301
FauNDI	CATATG	1 cut(s)	249
FbaI	TGATCA	1 cut(s)	304
Fnu4HI	GCNGC	2 cut(s)	606, 793
FokI	GGATG	3 cut(s)	177, 461, 683
FriOI	GRGCYC	4 cut(s)	45, 353, 543, 637
Fsp4HI	GCNGC	2 cut(s)	606, 793
FspBI	CTAG	2 cut(s)	20, 195
GlaI	GCGC	2 cut(s)	92, 245
GluI	GCNGC	2 cut(s)	606, 793
GsaI	CCCAGC	1 cut(s)	735
GsuI	CTGGAG	1 cut(s)	527
HaeIII	GGCC	2 cut(s)	456, 766
HapII	CCGG	2 cut(s)	551, 582
HhaI	GCGC	2 cut(s)	93, 246
Hin1I	GRCGYC	1 cut(s)	520
Hin1II	CATG	1 cut(s)	305
Hin6I	GCGC	2 cut(s)	91, 244
HinP1I	GCGC	2 cut(s)	91, 244
HinfI	GANTC	2 cut(s)	79, 86
HpaII	CCGG	2 cut(s)	551, 582
HphI	GGTGA	2 cut(s)	565, 626
Hpy188I	TCNGA	5 cut(s)	259, 386, 639, 698, 809
Hpy188III	TCNNGA	6 cut(s)	20, 83, 147, 302, 668, 704
Hpy99I	CGWCG	1 cut(s)	522
HpyAV	CCTTC	2 cut(s)	289, 779
HpyCH4III	ACNGT	1 cut(s)	662
HpyCH4IV	ACGT	5 cut(s)	403, 442, 520, 561, 714
HpyCH4V	TGCA	3 cut(s)	215, 277, 446
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 177, 602, 686, 728
HpyF3I	CTNAG	1 cut(s)	258
HpySE526I	ACGT	5 cut(s)	403, 442, 520, 561, 714
Hsp92I	GRCGYC	1 cut(s)	520
Hsp92II	CATG	1 cut(s)	305
HspAI	GCGC	2 cut(s)	91, 244
KpnI	GGTACC	1 cut(s)	531
Ksp22I	TGATCA	1 cut(s)	304
Kzo9I	GATC	4 cut(s)	143, 304, 489, 804
LguI	GCTCTTC	1 cut(s)	33
LmnI	GCTCC	3 cut(s)	48, 546, 719
LpnPI	CCDG	8 cut(s)	73, 544, 557, 564, 595, 662, 717, 780
Lsp1109I	GCAGC	1 cut(s)	804
LweI	GCATC	1 cut(s)	202
MaeI	CTAG	2 cut(s)	20, 195
MaeII	ACGT	5 cut(s)	403, 442, 520, 561, 714
MaeIII	GTNAC	2 cut(s)	62, 656
MalI	GATC	4 cut(s)	145, 306, 491, 806
MbiI	CCGCTC	1 cut(s)	722
MboI	GATC	4 cut(s)	143, 304, 489, 804
MboII	GAAGA	6 cut(s)	50, 117, 337, 431, 589, 752
MflI	RGATCY	1 cut(s)	804
MhlI	GDGCHC	4 cut(s)	45, 353, 543, 637
MluCI	AATT	3 cut(s)	265, 498, 699
MlyI	GAGTC	2 cut(s)	88, 95
MmeI	TCCRAC	1 cut(s)	605
Mph1103I	ATGCAT	1 cut(s)	217
MseI	TTAA	1 cut(s)	125
MslI	CAYNNNNRTG	1 cut(s)	669
MspI	CCGG	2 cut(s)	551, 582
MvnI	CGCG	2 cut(s)	91, 97
MwoI	GCNNNNNNNGC	5 cut(s)	10, 177, 602, 686, 728
NdeI	CATATG	1 cut(s)	249
NdeII	GATC	4 cut(s)	143, 304, 489, 804
NlaIII	CATG	1 cut(s)	305
NlaIV	GGNNCC	2 cut(s)	529, 542
NmuCI	GTSAC	1 cut(s)	62
NsiI	ATGCAT	1 cut(s)	217
PagI	TCATGA	1 cut(s)	301
PciSI	GCTCTTC	1 cut(s)	33
PcsI	WCGNNNNNNNCGW	1 cut(s)	711
PkrI	GCNGC	2 cut(s)	607, 794
PleI	GAGTC	2 cut(s)	87, 94
PpsI	GAGTC	2 cut(s)	87, 94
Ppu21I	YACGTR	1 cut(s)	443
Psp124BI	GAGCTC	2 cut(s)	45, 353
Psp1406I	AACGTT	1 cut(s)	403
PspFI	CCCAGC	1 cut(s)	731
PspN4I	GGNNCC	2 cut(s)	529, 542
PspPI	GGNCC	1 cut(s)	764
PsuI	RGATCY	1 cut(s)	804
RsaI	GTAC	1 cut(s)	529
RsaNI	GTAC	1 cut(s)	528
RseI	CAYNNNNRTG	1 cut(s)	669
SacI	GAGCTC	2 cut(s)	45, 353
SapI	GCTCTTC	1 cut(s)	33
SaqAI	TTAA	1 cut(s)	125
SatI	GCNGC	2 cut(s)	606, 793
Sau3AI	GATC	4 cut(s)	143, 304, 489, 804
Sau96I	GGNCC	1 cut(s)	764
SchI	GAGTC	2 cut(s)	88, 95
SduI	GDGCHC	4 cut(s)	45, 353, 543, 637
SfaNI	GCATC	1 cut(s)	202
SmiMI	CAYNNNNRTG	1 cut(s)	669
Sse9I	AATT	3 cut(s)	265, 498, 699
SsiI	CCGC	6 cut(s)	11, 180, 605, 608, 654, 722
SspI	AATATT	1 cut(s)	340
SspMI	CTAG	2 cut(s)	20, 195
SstI	GAGCTC	2 cut(s)	45, 353
StyI	CCWWGG	1 cut(s)	451
TaaI	ACNGT	1 cut(s)	662
TaiI	ACGT	5 cut(s)	406, 445, 523, 564, 717
TaqI	TCGA	4 cut(s)	517, 684, 705, 783
TasI	AATT	3 cut(s)	265, 498, 699
TauI	GCSGC	1 cut(s)	608
Tru1I	TTAA	1 cut(s)	125
Tru9I	TTAA	1 cut(s)	125
TseFI	GTSAC	1 cut(s)	62
TseI	GCWGC	1 cut(s)	792
Tsp45I	GTSAC	1 cut(s)	62
TspDTI	ATGAA	3 cut(s)	290, 381, 463
TspGWI	ACGGA	2 cut(s)	84, 482
XapI	RAATTY	3 cut(s)	265, 498, 699
XbaI	TCTAGA	1 cut(s)	19
XspI	CTAG	2 cut(s)	20, 195
ZraI	GACGTC	1 cut(s)	521
Zsp2I	ATGCAT	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.