Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001423.1

Orthogroup ID

OG0001715

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 3299

Gene Structure 3299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

gtaggtatcatggctagggttttcgtccagtctactaacattcctagtgtggttgccaggccaaagcttggtcaatttaaaggatctgaaaattctagaaaggcaacaaagatgatgtgtactttacgagcacctgcattgagattgagcagtttctcaggactccgtagtgttaatgttttagatattatggtgaagcctgggcaagacttatatgctaaggtgggagaagcgatctcctcccggcatcgaaaggctagcagatgtgtgcctaaagccacgtcgtttgatcgcttctcagaaaaggcaataaaagcgattatgcttgcacaagaggaaacaatgcgaattggtcacaactttgttggtacagagcacatacttttgggtcttgttggtgaaggaactggaattgctgccaaggtccttaaatctatgggaatcaatcttgaaggggcacgcgttgaagtgaaaaagatcattggaacgggtcgtggctttgttgctattgaaatcccattcacttctcgtgcaaagcgagttttggaactgtcacaggaggaagctcgacaactgggtgagagcacagaagctgttggttttggagctagacagaaccagtggcaacaaaatggtaactctagagtatggagccaatttgactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko01100 map01100

Pfam Domains

Protein Families

AAA AAA_2 ClpB_D2-small Clp_N UVR

Protein Analysis

221

Amino Acids

24.16

Weight (kDa)

10.31

Isoelectric Point (pI)

42.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Clp_N	PF02861	98 - 195	4.4e-23	Clp repeat (R) N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21800 AT2G21800 AT2G21800 AT2G22140 AT2G22140
fragaria_vesca	FvH4_1g23210 FvH4_1g23210 FvH4_1g23210 FvH4_1g23210 FvH4_1g23210 FvH4_1g23210 FvH4_5g31350 FvH4_5g31350
malus_domestica	MD15G1335700.v1.1 MD15G1404100.v1.1
prunus_persica	Prupe.1G550600_v2.0.a1 Prupe.1G550600_v2.0.a1 Prupe.1G550600_v2.0.a1 Prupe.6G166800_v2.0.a1
pyrus_communis	pycom15g28970
rosa_chinensis	RchiOBHm_Chr2g0117911 RchiOBHm_Chr7g0226601 RchiOBHm_Chr7g0226611 RchiOBHm_Chr7g0228631
rosa_laevigata	RLG00000001714 RLG00000018383
rosa_multiflora	Rmu_sc0001423.1_g000001
rosa_roxburghii	Rroxscaffold_2G00126110 Rroxscaffold_3G00230990 Rroxscaffold_3G00232670
rosa_rugosa	Rorug02G0214800 Rorug02G0214900 Rorug02G0214900 Rorug07G0238500 Rorug07G0238600
rosa_samantha	Rh2AG271200 Rh2BG282800 Rh2DG279100 Rh2DG297000 Rh7AG386100 Rh7AG403200 Rh7BG372700 Rh7BG372800 Rh7CG405400 Rh7CG422500 Rh7DG384700
rosa_wichuraiana	Rw2G021450 Rw7G032410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	142
Acc36I	ACCTGC	1 cut(s)	142
AccB7I	CCANNNNNTGG	1 cut(s)	68
AccI	GTMKAC	1 cut(s)	32
AccII	CGCG	1 cut(s)	462
AclWI	GGATC	1 cut(s)	91
AcsI	RAATTY	1 cut(s)	91
AfaI	GTAC	2 cut(s)	121, 370
AfiI	CCNNNNNNNGG	1 cut(s)	68
AflIII	ACRYGT	1 cut(s)	460
AgsI	TTSAA	3 cut(s)	452, 467, 512
AjiI	CACGTC	1 cut(s)	282
AjnI	CCWGG	2 cut(s)	56, 199
AluBI	AGCT	4 cut(s)	67, 566, 593, 608
AluI	AGCT	4 cut(s)	67, 566, 593, 608
Alw21I	GWGCWC	3 cut(s)	133, 378, 587
AlwI	GGATC	1 cut(s)	91
AlwNI	CAGNNNCTG	1 cut(s)	593
AoxI	GGCC	1 cut(s)	59
ApeKI	GCWGC	1 cut(s)	416
ApoI	RAATTY	1 cut(s)	91
AspS9I	GGNCC	1 cut(s)	424
AsuC2I	CCSGG	1 cut(s)	244
AsuHPI	GGTGA	3 cut(s)	205, 410, 590
AsuNHI	GCTAGC	1 cut(s)	257
AvaII	GGWCC	1 cut(s)	424
BaeGI	GKGCMC	1 cut(s)	460
BauI	CACGAG	1 cut(s)	528
Bbv12I	GWGCWC	3 cut(s)	133, 378, 587
BbvI	GCAGC	1 cut(s)	403
BciT130I	CCWGG	2 cut(s)	58, 201
BcnI	CCSGG	1 cut(s)	244
BfaI	CTAG	6 cut(s)	15, 45, 96, 258, 609, 642
BfuAI	ACCTGC	1 cut(s)	142
BisI	GCNGC	1 cut(s)	417
BlsI	GCNGC	1 cut(s)	418
Bme1390I	CCNGG	3 cut(s)	58, 201, 244
Bme18I	GGWCC	1 cut(s)	424
BmgBI	CACGTC	1 cut(s)	282
BmgT120I	GGNCC	1 cut(s)	424
BmiI	GGNNCC	1 cut(s)	653
BmrFI	CCNGG	3 cut(s)	58, 201, 244
BmrI	ACTGGG	1 cut(s)	584
BmsI	GCATC	1 cut(s)	256
BmtI	GCTAGC	1 cut(s)	261
BmuI	ACTGGG	1 cut(s)	584
Bpu10I	CCTNAGC	1 cut(s)	219
BpuMI	CCSGG	1 cut(s)	244
BsaJI	CCNNGG	2 cut(s)	200, 420
Bsc4I	CCNNNNNNNGG	1 cut(s)	68
Bse1I	ACTGG	4 cut(s)	28, 412, 579, 619
BseBI	CCWGG	2 cut(s)	58, 201
BseDI	CCNNGG	2 cut(s)	200, 420
BseLI	CCNNNNNNNGG	1 cut(s)	68
BseMII	CTCAG	2 cut(s)	171, 312
BseNI	ACTGG	4 cut(s)	28, 412, 579, 619
BseRI	GAGGAG	1 cut(s)	229
BseSI	GKGCMC	1 cut(s)	460
BseXI	GCAGC	1 cut(s)	403
Bsh1236I	CGCG	1 cut(s)	462
BshFI	GGCC	1 cut(s)	61
BsiHKAI	GWGCWC	3 cut(s)	133, 378, 587
BsiSI	CCGG	1 cut(s)	244
BslI	CCNNNNNNNGG	1 cut(s)	68
BsnI	GGCC	1 cut(s)	61
Bsp1286I	GDGCHC	4 cut(s)	133, 378, 460, 587
Bsp143I	GATC	4 cut(s)	83, 234, 289, 477
BspANI	GGCC	1 cut(s)	61
BspCNI	CTCAG	2 cut(s)	170, 311
BspFNI	CGCG	1 cut(s)	462
BspLI	GGNNCC	1 cut(s)	653
BspMI	ACCTGC	1 cut(s)	142
BspOI	GCTAGC	1 cut(s)	261
BspPI	GGATC	1 cut(s)	91
BsrI	ACTGG	4 cut(s)	28, 412, 579, 619
BssECI	CCNNGG	2 cut(s)	200, 420
BssMI	GATC	4 cut(s)	83, 234, 289, 477
BssSI	CACGAG	1 cut(s)	528
BssT1I	CCWWGG	1 cut(s)	420
Bst2BI	CACGAG	1 cut(s)	528
Bst2UI	CCWGG	2 cut(s)	58, 201
Bst4CI	ACNGT	1 cut(s)	552
BstC8I	GCNNGC	3 cut(s)	259, 327, 460
BstDEI	CTNAG	3 cut(s)	157, 219, 298
BstFNI	CGCG	1 cut(s)	462
BstKTI	GATC	4 cut(s)	86, 237, 292, 480
BstMBI	GATC	4 cut(s)	83, 234, 289, 477
BstMWI	GCNNNNNNNGC	1 cut(s)	314
BstNI	CCWGG	2 cut(s)	58, 201
BstSCI	CCNGG	3 cut(s)	56, 199, 242
BstSLI	GKGCMC	1 cut(s)	460
BstUI	CGCG	1 cut(s)	462
BstV1I	GCAGC	1 cut(s)	403
BstX2I	RGATCY	1 cut(s)	83
BstYI	RGATCY	1 cut(s)	83
BsuRI	GGCC	1 cut(s)	61
BtrI	CACGTC	1 cut(s)	282
BtsIMutI	CAGTG	1 cut(s)	626
BveI	ACCTGC	1 cut(s)	142
Cac8I	GCNNGC	3 cut(s)	259, 327, 460
CaiI	CAGNNNCTG	1 cut(s)	593
Cfr13I	GGNCC	1 cut(s)	424
Csp6I	GTAC	2 cut(s)	120, 369
CspCI	CAANNNNNGTGG	2 cut(s)	268, 303
CviAII	CATG	1 cut(s)	10
CviQI	GTAC	2 cut(s)	120, 369
DdeI	CTNAG	3 cut(s)	157, 219, 298
DpnI	GATC	4 cut(s)	85, 236, 291, 479
DpnII	GATC	4 cut(s)	83, 234, 289, 477
DraI	TTTAAA	1 cut(s)	79
Eco130I	CCWWGG	1 cut(s)	420
Eco47I	GGWCC	1 cut(s)	424
EcoO109I	RGGNCCY	1 cut(s)	424
EcoRII	CCWGG	2 cut(s)	56, 199
EcoT14I	CCWWGG	1 cut(s)	420
ErhI	CCWWGG	1 cut(s)	420
FaeI	CATG	1 cut(s)	13
FaiI	YATR	8 cut(s)	11, 191, 214, 216, 323, 380, 437, 649
FatI	CATG	1 cut(s)	9
FblI	GTMKAC	1 cut(s)	32
Fnu4HI	GCNGC	1 cut(s)	417
Fsp4HI	GCNGC	1 cut(s)	417
FspBI	CTAG	6 cut(s)	15, 45, 96, 258, 609, 642
GluI	GCNGC	1 cut(s)	417
HaeIII	GGCC	1 cut(s)	61
HapII	CCGG	1 cut(s)	244
Hin1II	CATG	1 cut(s)	13
HindIII	AAGCTT	1 cut(s)	65
HinfI	GANTC	2 cut(s)	162, 441
HpaII	CCGG	1 cut(s)	244
HphI	GGTGA	3 cut(s)	205, 410, 590
Hpy166II	GTNNAC	2 cut(s)	33, 120
Hpy188I	TCNGA	2 cut(s)	88, 301
Hpy188III	TCNNGA	4 cut(s)	96, 159, 449, 642
Hpy8I	GTNNAC	2 cut(s)	33, 120
Hpy99I	CGWCG	1 cut(s)	286
HpyAV	CCTTC	2 cut(s)	395, 446
HpyCH4III	ACNGT	1 cut(s)	552
HpyCH4IV	ACGT	1 cut(s)	281
HpyCH4V	TGCA	3 cut(s)	137, 329, 533
HpyF10VI	GCNNNNNNNGC	1 cut(s)	314
HpyF3I	CTNAG	3 cut(s)	157, 219, 298
HpySE526I	ACGT	1 cut(s)	281
Hsp92II	CATG	1 cut(s)	13
Kzo9I	GATC	4 cut(s)	83, 234, 289, 477
LmnI	GCTCC	2 cut(s)	605, 651
Lsp1109I	GCAGC	1 cut(s)	403
LweI	GCATC	1 cut(s)	256
MaeI	CTAG	6 cut(s)	15, 45, 96, 258, 609, 642
MaeII	ACGT	1 cut(s)	281
MaeIII	GTNAC	3 cut(s)	353, 552, 635
MalI	GATC	4 cut(s)	85, 236, 291, 479
MboI	GATC	4 cut(s)	83, 234, 289, 477
MflI	RGATCY	1 cut(s)	83
MhlI	GDGCHC	4 cut(s)	133, 378, 460, 587
MluCI	AATT	5 cut(s)	74, 91, 348, 411, 656
MluI	ACGCGT	1 cut(s)	460
MlyI	GAGTC	1 cut(s)	156
MnlI	CCTC	3 cut(s)	250, 328, 553
MseI	TTAA	3 cut(s)	78, 174, 429
MspI	CCGG	1 cut(s)	244
MspR9I	CCNGG	3 cut(s)	58, 201, 244
MvaI	CCWGG	2 cut(s)	58, 201
MvnI	CGCG	1 cut(s)	462
MwoI	GCNNNNNNNGC	1 cut(s)	314
NciI	CCSGG	1 cut(s)	244
NdeII	GATC	4 cut(s)	83, 234, 289, 477
NheI	GCTAGC	1 cut(s)	257
NlaIII	CATG	1 cut(s)	13
NlaIV	GGNNCC	1 cut(s)	653
NmuCI	GTSAC	2 cut(s)	353, 552
PaqCI	CACCTGC	1 cut(s)	142
PcsI	WCGNNNNNNNCGW	1 cut(s)	535
PfeI	GAWTC	1 cut(s)	441
PflMI	CCANNNNNTGG	1 cut(s)	68
PkrI	GCNGC	1 cut(s)	418
PleI	GAGTC	1 cut(s)	156
PpsI	GAGTC	1 cut(s)	156
PpuMI	RGGWCCY	1 cut(s)	424
Psp5II	RGGWCCY	1 cut(s)	424
Psp6I	CCWGG	2 cut(s)	56, 199
PspGI	CCWGG	2 cut(s)	56, 199
PspN4I	GGNNCC	1 cut(s)	653
PspPI	GGNCC	1 cut(s)	424
PspPPI	RGGWCCY	1 cut(s)	424
PstNI	CAGNNNCTG	1 cut(s)	593
PsuI	RGATCY	1 cut(s)	83
RsaI	GTAC	2 cut(s)	121, 370
RsaNI	GTAC	2 cut(s)	120, 369
SaqAI	TTAA	3 cut(s)	78, 174, 429
SatI	GCNGC	1 cut(s)	417
Sau3AI	GATC	4 cut(s)	83, 234, 289, 477
Sau96I	GGNCC	1 cut(s)	424
SchI	GAGTC	1 cut(s)	156
ScrFI	CCNGG	3 cut(s)	58, 201, 244
SduI	GDGCHC	4 cut(s)	133, 378, 460, 587
SetI	ASST	9 cut(s)	7, 69, 136, 225, 284, 426, 568, 595, 610
SfaNI	GCATC	1 cut(s)	256
SinI	GGWCC	1 cut(s)	424
Sse9I	AATT	5 cut(s)	74, 91, 348, 411, 656
SspMI	CTAG	6 cut(s)	15, 45, 96, 258, 609, 642
StyD4I	CCNGG	3 cut(s)	56, 199, 242
StyI	CCWWGG	1 cut(s)	420
TaaI	ACNGT	1 cut(s)	552
TaiI	ACGT	1 cut(s)	284
TaqI	TCGA	2 cut(s)	250, 568
TasI	AATT	5 cut(s)	74, 91, 348, 411, 656
TatI	WGTACW	1 cut(s)	119
TfiI	GAWTC	1 cut(s)	441
Tru1I	TTAA	3 cut(s)	78, 174, 429
Tru9I	TTAA	3 cut(s)	78, 174, 429
TscAI	CASTG	1 cut(s)	626
TseFI	GTSAC	2 cut(s)	353, 552
TseI	GCWGC	1 cut(s)	416
Tsp45I	GTSAC	2 cut(s)	353, 552
TspGWI	ACGGA	1 cut(s)	155
TspRI	CASTG	1 cut(s)	626
Van91I	CCANNNNNTGG	1 cut(s)	68
VpaK11BI	GGWCC	1 cut(s)	424
XapI	RAATTY	1 cut(s)	91
XbaI	TCTAGA	2 cut(s)	95, 641
XmiI	GTMKAC	1 cut(s)	32
XspI	CTAG	6 cut(s)	15, 45, 96, 258, 609, 642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.