Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001706.1

Orthogroup ID

OG0003302

Physical Location & Seq

Genomic Coordinates Reverse (-)

27289 .. 31049

Gene Structure 3761 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

atgggccgggctggcccagccctcagaataatggcccaagttactatccaaccttgggaatttttagccctgcgctgcctaactgaaacggtgagcccggatttggatttggatttggatttgtttcggaagagaatagcccaattgaaatcagagaagctcatcgaggaattgcatttgcctaatctaatagctgctaccaaagaggaggaaggaggatatcgtttgatcgagggaatcccgactctggaacatgcaaagctcaaagctagggtggaggttttgcagagaaatcaatgtcaatttatggggaaagacatccaatccttaagtatgaaagatcttcagaatttggagcagcaacttgattctgctgtgaagcacgtgaggtctagaaaggtaatgatgccggagcatcaccacgcctcaatttcaagtgacagccccgtcaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009888 GO:0009889 GO:0009909 GO:0009911 GO:0010073 GO:0010074 GO:0010077 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048507 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0098727 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

151

Amino Acids

17.19

Weight (kDa)

7.02

Isoelectric Point (pI)

54.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K-box	PF01486	84 - 135	4e-17	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003302)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60910 AT5G60910
fragaria_vesca	FvH4_5g13500 FvH4_5g13500
malus_domestica	MD06G1204400.v1.1 MD14G1215700.v1.1
prunus_persica	Prupe.5G208500_v2.0.a1
pyrus_communis	pycom06g18270 pycom14g17850
rosa_chinensis	RchiOBHm_Chr5g0001291 RchiOBHm_Chr7g0183571
rosa_laevigata	RLG00000005041
rosa_multiflora	Rmu_co8416243.1_g000001 Rmu_co8484491.1_g000001 Rmu_sc0001706.1_g000007 Rmu_sc0003610.1_g000016 Rmu_sc0004189.1_g000041 Rmu_sc0005581.1_g000009
rosa_roxburghii	Rroxscaffold_1G00075010 Rroxscaffold_3G00270400
rosa_rugosa	Rorug04G0389600 Rorug06G0458400 Rorug06G0458500.1
rosa_samantha	Rh5AG009700 Rh5BG012600 Rh5BG012800 Rh5CG010200 Rh5CG010800 Rh5CG061900 Rh5DG010200 Rh5DG010300 Rh7AG059600 Rh7BG059300 Rh7CG061300 Rh7DG059700
rosa_wichuraiana	Rw7G004890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	446
AcsI	RAATTY	2 cut(s)	59, 349
AcuI	CTGAAG	1 cut(s)	329
AcvI	CACGTG	1 cut(s)	385
AfiI	CCNNNNNNNGG	3 cut(s)	55, 103, 247
AflII	CTTAAG	1 cut(s)	328
AgsI	TTSAA	2 cut(s)	148, 435
AluBI	AGCT	4 cut(s)	160, 194, 262, 269
AluI	AGCT	4 cut(s)	160, 194, 262, 269
AoxI	GGCC	3 cut(s)	4, 13, 33
ApeKI	GCWGC	3 cut(s)	75, 194, 358
ApoI	RAATTY	2 cut(s)	59, 349
AspLEI	GCGC	1 cut(s)	75
AspS9I	GGNCC	3 cut(s)	4, 14, 34
AsuC2I	CCSGG	2 cut(s)	8, 98
AsuHPI	GGTGA	2 cut(s)	103, 410
BanII	GRGCYC	1 cut(s)	98
BbrPI	CACGTG	1 cut(s)	385
BbvI	GCAGC	3 cut(s)	62, 181, 370
BcnI	CCSGG	2 cut(s)	8, 98
BfaI	CTAG	2 cut(s)	270, 393
BfrI	CTTAAG	1 cut(s)	328
BglI	GCCNNNNNGGC	1 cut(s)	12
BglII	AGATCT	1 cut(s)	340
BisI	GCNGC	3 cut(s)	76, 195, 359
BlsI	GCNGC	3 cut(s)	77, 196, 360
Bme1390I	CCNGG	2 cut(s)	8, 98
BmgT120I	GGNCC	3 cut(s)	4, 14, 34
BmrFI	CCNGG	2 cut(s)	8, 98
BmsI	GCATC	2 cut(s)	396, 424
BpuMI	CCSGG	2 cut(s)	8, 98
BsaAI	YACGTR	1 cut(s)	385
BsaJI	CCNNGG	1 cut(s)	53
Bsc4I	CCNNNNNNNGG	3 cut(s)	55, 103, 247
BseDI	CCNNGG	1 cut(s)	53
BseGI	GGATG	1 cut(s)	318
BseLI	CCNNNNNNNGG	3 cut(s)	55, 103, 247
BseMII	CTCAG	1 cut(s)	37
BseRI	GAGGAG	1 cut(s)	221
BseXI	GCAGC	3 cut(s)	62, 181, 370
BseYI	CCCAGC	1 cut(s)	16
BshFI	GGCC	3 cut(s)	6, 15, 35
BsiSI	CCGG	3 cut(s)	7, 98, 410
BslI	CCNNNNNNNGG	3 cut(s)	55, 103, 247
BsnI	GGCC	3 cut(s)	6, 15, 35
Bsp1286I	GDGCHC	1 cut(s)	98
Bsp143I	GATC	2 cut(s)	228, 340
BspANI	GGCC	3 cut(s)	6, 15, 35
BspCNI	CTCAG	1 cut(s)	36
BspTI	CTTAAG	1 cut(s)	328
BssECI	CCNNGG	1 cut(s)	53
BssMI	GATC	2 cut(s)	228, 340
BssT1I	CCWWGG	1 cut(s)	53
Bst4CI	ACNGT	1 cut(s)	91
Bst6I	CTCTTC	1 cut(s)	125
BstAFI	CTTAAG	1 cut(s)	328
BstBAI	YACGTR	1 cut(s)	385
BstC8I	GCNNGC	1 cut(s)	13
BstDEI	CTNAG	1 cut(s)	23
BstF5I	GGATG	1 cut(s)	318
BstHHI	GCGC	1 cut(s)	75
BstKTI	GATC	2 cut(s)	231, 343
BstMBI	GATC	2 cut(s)	228, 340
BstMWI	GCNNNNNNNGC	2 cut(s)	12, 17
BstNSI	RCATGY	1 cut(s)	257
BstSCI	CCNGG	2 cut(s)	6, 96
BstV1I	GCAGC	3 cut(s)	62, 181, 370
BstX2I	RGATCY	1 cut(s)	340
BstYI	RGATCY	1 cut(s)	340
BsuRI	GGCC	3 cut(s)	6, 15, 35
BtsCI	GGATG	1 cut(s)	318
Cac8I	GCNNGC	1 cut(s)	13
CfoI	GCGC	1 cut(s)	75
Cfr13I	GGNCC	3 cut(s)	4, 14, 34
CviAII	CATG	1 cut(s)	254
DdeI	CTNAG	1 cut(s)	23
DpnI	GATC	2 cut(s)	230, 342
DpnII	GATC	2 cut(s)	228, 340
DrdI	GACNNNNNNGTC	1 cut(s)	446
DseDI	GACNNNNNNGTC	1 cut(s)	446
Eam1104I	CTCTTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	125
Eco130I	CCWWGG	1 cut(s)	53
Eco24I	GRGCYC	1 cut(s)	98
Eco32I	GATATC	1 cut(s)	221
Eco57I	CTGAAG	1 cut(s)	329
Eco72I	CACGTG	1 cut(s)	385
EcoRV	GATATC	1 cut(s)	221
EcoT14I	CCWWGG	1 cut(s)	53
EcoT38I	GRGCYC	1 cut(s)	98
ErhI	CCWWGG	1 cut(s)	53
FaeI	CATG	1 cut(s)	257
FaiI	YATR	3 cut(s)	255, 308, 335
FatI	CATG	1 cut(s)	253
Fnu4HI	GCNGC	3 cut(s)	76, 195, 359
FokI	GGATG	1 cut(s)	305
FriOI	GRGCYC	1 cut(s)	98
Fsp4HI	GCNGC	3 cut(s)	76, 195, 359
FspBI	CTAG	2 cut(s)	270, 393
GlaI	GCGC	1 cut(s)	74
GluI	GCNGC	3 cut(s)	76, 195, 359
GsaI	CCCAGC	1 cut(s)	20
HaeIII	GGCC	3 cut(s)	6, 15, 35
HapII	CCGG	3 cut(s)	7, 98, 410
HhaI	GCGC	1 cut(s)	75
Hin1II	CATG	1 cut(s)	257
Hin6I	GCGC	1 cut(s)	73
HinP1I	GCGC	1 cut(s)	73
HinfI	GANTC	3 cut(s)	237, 244, 368
HpaII	CCGG	3 cut(s)	7, 98, 410
HphI	GGTGA	2 cut(s)	103, 410
Hpy188I	TCNGA	4 cut(s)	26, 129, 154, 348
Hpy188III	TCNNGA	3 cut(s)	241, 248, 393
HpyAV	CCTTC	1 cut(s)	206
HpyCH4III	ACNGT	1 cut(s)	91
HpyCH4IV	ACGT	1 cut(s)	384
HpyCH4V	TGCA	3 cut(s)	175, 257, 286
HpyF10VI	GCNNNNNNNGC	2 cut(s)	12, 17
HpyF3I	CTNAG	1 cut(s)	23
HpySE526I	ACGT	1 cut(s)	384
Hsp92II	CATG	1 cut(s)	257
HspAI	GCGC	1 cut(s)	73
Kzo9I	GATC	2 cut(s)	228, 340
LmnI	GCTCC	2 cut(s)	355, 412
LpnPI	CCDG	6 cut(s)	20, 30, 83, 111, 233, 423
Lsp1109I	GCAGC	3 cut(s)	62, 181, 370
LweI	GCATC	2 cut(s)	396, 424
MaeI	CTAG	2 cut(s)	270, 393
MaeII	ACGT	1 cut(s)	384
MaeIII	GTNAC	2 cut(s)	40, 437
MalI	GATC	2 cut(s)	230, 342
MboI	GATC	2 cut(s)	228, 340
MboII	GAAGA	2 cut(s)	142, 335
MfeI	CAATTG	1 cut(s)	143
MflI	RGATCY	1 cut(s)	340
MhlI	GDGCHC	1 cut(s)	98
MluCI	AATT	6 cut(s)	59, 143, 170, 302, 349, 429
MlyI	GAGTC	1 cut(s)	238
MmeI	TCCRAC	1 cut(s)	73
MnlI	CCTC	9 cut(s)	32, 160, 199, 202, 209, 226, 271, 381, 436
MseI	TTAA	1 cut(s)	329
MspCI	CTTAAG	1 cut(s)	328
MspI	CCGG	3 cut(s)	7, 98, 410
MspR9I	CCNGG	2 cut(s)	8, 98
MunI	CAATTG	1 cut(s)	143
MwoI	GCNNNNNNNGC	2 cut(s)	12, 17
NciI	CCSGG	2 cut(s)	8, 98
NdeII	GATC	2 cut(s)	228, 340
NlaIII	CATG	1 cut(s)	257
NmuCI	GTSAC	1 cut(s)	437
NspI	RCATGY	1 cut(s)	257
PfeI	GAWTC	2 cut(s)	237, 368
PkrI	GCNGC	3 cut(s)	77, 196, 360
PleI	GAGTC	1 cut(s)	238
PmaCI	CACGTG	1 cut(s)	385
PmlI	CACGTG	1 cut(s)	385
PpsI	GAGTC	1 cut(s)	238
Ppu21I	YACGTR	1 cut(s)	385
PspCI	CACGTG	1 cut(s)	385
PspFI	CCCAGC	1 cut(s)	16
PspPI	GGNCC	3 cut(s)	4, 14, 34
PsuI	RGATCY	1 cut(s)	340
SaqAI	TTAA	1 cut(s)	329
SatI	GCNGC	3 cut(s)	76, 195, 359
Sau3AI	GATC	2 cut(s)	228, 340
Sau96I	GGNCC	3 cut(s)	4, 14, 34
SchI	GAGTC	1 cut(s)	238
ScrFI	CCNGG	2 cut(s)	8, 98
SduI	GDGCHC	1 cut(s)	98
SetI	ASST	9 cut(s)	55, 162, 196, 264, 271, 282, 387, 392, 402
SfaNI	GCATC	2 cut(s)	396, 424
SfiI	GGCCNNNNNGGCC	1 cut(s)	12
SmlI	CTYRAG	1 cut(s)	328
SmoI	CTYRAG	1 cut(s)	328
Sse9I	AATT	6 cut(s)	59, 143, 170, 302, 349, 429
SspMI	CTAG	2 cut(s)	270, 393
StyD4I	CCNGG	2 cut(s)	6, 96
StyI	CCWWGG	1 cut(s)	53
TaaI	ACNGT	1 cut(s)	91
TaiI	ACGT	1 cut(s)	387
TaqI	TCGA	2 cut(s)	165, 231
TasI	AATT	6 cut(s)	59, 143, 170, 302, 349, 429
TfiI	GAWTC	2 cut(s)	237, 368
Tru1I	TTAA	1 cut(s)	329
Tru9I	TTAA	1 cut(s)	329
TseFI	GTSAC	1 cut(s)	437
TseI	GCWGC	3 cut(s)	75, 194, 358
Tsp45I	GTSAC	1 cut(s)	437
TspDTI	ATGAA	1 cut(s)	350
Vha464I	CTTAAG	1 cut(s)	328
XapI	RAATTY	2 cut(s)	59, 349
XbaI	TCTAGA	1 cut(s)	392
XceI	RCATGY	1 cut(s)	257
XspI	CTAG	2 cut(s)	270, 393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.