Rmu_sc0001939.1_g000013

Tryptophan aminotransferase-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001939.1
OG0001908
Physical Location & Seq
Reverse (-)
46332 .. 48195
1864 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1275 bp
atgagaggacatgagtcgaacgttaaagtgcaattatatgaggaaattgatgtaggtaaagctacaccaaaaagaacgagcctcaatgaattatttgtatatattgttggttgcagtggagatccatatttcttagagcccttttggatgcaacatgcttctgaaagtgcagttctagtagcagggtggcatcgaatgggctatactttccctgatcaggcttacatctcacaagagcttgagaggctcatccgcaaagttcacgacattgctggtaatgcagtcactcaaggaaggtacattgtaattggtgctggctcaacccatctcctcaacgctgcagttaaagcgctctctttctcatcaaccagtagtttcaactcatcatcaccctcacctgctagtgttgttgtttcaattcctttttacgcgctttatgaaacgcaaacggaatacttccgatcattggattacaagttcgaaggggatggttcgttgctgccaaacatcacagatggaactaagagggttattgagtttgtaaccgcaccaaacaatcctgatgggaagctaaacaaagcaaattttcaaggaccaaattccgcagcaatctatgatcgtgtttattattggccacatttcacaccaattccaactccagcaaatgacgatgtcatggtgttttcaatttccaagctcactggccatgctggtacaagattagggtgggcagtgataaaggatgaggcagtgtaccaaagaatgttgaatcacactgtgataagtaacttgggtatttctcgcgatactcagctaagagctttcaagcttttgaatgcagtcgtagaaggtggagggaaagaaattttcgaattcggatacaccacaatgaggaaacgttgggaaactttgagtaacgccctgtctgtatcaaaccgcttttctctgcagaaagttgaacctctctactgcacttttttcaaaaaaattagaagaccatctccagcctatgcgtgggtgaagtgcgagagggaagaggataaagattgttacgcagtcctcaaagacgaagctaatgttaatggccgtagaggaagtgtctttggttctgaagatcgatatgtacgtctcagcctcataagaagccaagatgatttcgatatattgcttcaccgactgaaacagttagtctccaaggaagatgcacagacccgtatttatatgaaaaatgtgacaaaccaatttcttagacgcaaaactcatgtcaatagctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Alliinase_C EGF_alliinase

Protein Analysis

424

Amino Acids

48.06

Weight (kDa)

9.0

Isoelectric Point (pI)

38.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alliinase_C PF04864 39 - 397 3.9e-138 Allinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 406
Acc36I ACCTGC 1 cut(s) 406
AccII CGCG 2 cut(s) 431, 804
AciI CCGC 4 cut(s) 253, 546, 603, 937
AclI AACGTT 2 cut(s) 21, 898
AclWI GGATC 1 cut(s) 116
AcoI YGGCCR 3 cut(s) 632, 703, 1084
AcsI RAATTY 4 cut(s) 583, 598, 864, 872
AcuI CTGAAG 1 cut(s) 1131
AdeI CACNNNGTG 1 cut(s) 778
AfaI GTAC 4 cut(s) 299, 715, 755, 1125
AfeI AGCGCT 1 cut(s) 351
AfiI CCNNNNNNNGG 4 cut(s) 217, 466, 891, 1014
AgsI TTSAA 9 cut(s) 379, 417, 590, 687, 769, 826, 835, 959, 982
AloI GAACNNNNNNTCC 2 cut(s) 461, 493
AluBI AGCT 9 cut(s) 62, 238, 571, 697, 814, 821, 829, 1073, 1272
AluI AGCT 9 cut(s) 62, 238, 571, 697, 814, 821, 829, 1073, 1272
Alw26I GTCTC 2 cut(s) 1133, 1195
AlwI GGATC 1 cut(s) 116
Aor51HI AGCGCT 1 cut(s) 351
AoxI GGCC 3 cut(s) 632, 703, 1084
ApeKI GCWGC 3 cut(s) 338, 499, 605
ApoI RAATTY 4 cut(s) 583, 598, 864, 872
ArsI GACNNNNNNTTYG 1 cut(s) 1248
AspLEI GCGC 2 cut(s) 352, 433
AspS9I GGNCC 1 cut(s) 593
AsuHPI GGTGA 4 cut(s) 381, 387, 1030, 1163
AsuII TTCGAA 2 cut(s) 480, 870
AvaII GGWCC 1 cut(s) 593
BalI TGGCCA 2 cut(s) 634, 705
BanII GRGCYC 1 cut(s) 141
BbsI GAAGAC 1 cut(s) 1000
BbvI GCAGC 3 cut(s) 325, 486, 617
BccI CCATC 5 cut(s) 333, 482, 509, 557, 1006
BceAI ACGGC 1 cut(s) 1071
BciVI GTATCC 1 cut(s) 872
BclI TGATCA 1 cut(s) 214
BcoDI GTCTC 2 cut(s) 1133, 1195
BfaI CTAG 3 cut(s) 176, 402, 1273
BfmI CTRYAG 2 cut(s) 339, 947
BfoI RGCGCY 1 cut(s) 353
BfuAI ACCTGC 1 cut(s) 406
BfuI GTATCC 1 cut(s) 872
BisI GCNGC 3 cut(s) 339, 500, 606
BlsI GCNGC 3 cut(s) 340, 501, 607
Bme18I GGWCC 1 cut(s) 593
BmgT120I GGNCC 1 cut(s) 593
BmsI GCATC 3 cut(s) 138, 199, 1192
BoxI GACNNNNGTC 1 cut(s) 13
BpiI GAAGAC 1 cut(s) 1000
BpmI CTGGAG 2 cut(s) 642, 987
Bpu14I TTCGAA 2 cut(s) 480, 870
BpuEI CTTGAG 2 cut(s) 260, 273
Bsa29I ATCGAT 1 cut(s) 1117
BsaJI CCNNGG 1 cut(s) 1194
Bsc4I CCNNNNNNNGG 4 cut(s) 217, 466, 891, 1014
Bse1I ACTGG 2 cut(s) 369, 706
Bse3DI GCAATG 1 cut(s) 267
BseCI ATCGAT 1 cut(s) 1117
BseDI CCNNGG 1 cut(s) 1194
BseGI GGATG 4 cut(s) 153, 249, 493, 748
BseLI CCNNNNNNNGG 4 cut(s) 217, 466, 891, 1014
BseMI GCAATG 1 cut(s) 267
BseMII CTCAG 2 cut(s) 824, 1144
BseNI ACTGG 2 cut(s) 369, 706
BseRI GAGGAG 1 cut(s) 320
BseXI GCAGC 3 cut(s) 325, 486, 617
BsgI GTGCAG 2 cut(s) 189, 955
Bsh1236I CGCG 2 cut(s) 431, 804
BshFI GGCC 3 cut(s) 634, 705, 1086
BshVI ATCGAT 1 cut(s) 1117
BslI CCNNNNNNNGG 4 cut(s) 217, 466, 891, 1014
BsmAI GTCTC 2 cut(s) 1133, 1195
BsmBI CGTCTC 1 cut(s) 1133
BsmI GAATGC 1 cut(s) 841
BsnI GGCC 3 cut(s) 634, 705, 1086
Bsp119I TTCGAA 2 cut(s) 480, 870
Bsp1286I GDGCHC 1 cut(s) 141
Bsp143I GATC 5 cut(s) 121, 214, 461, 616, 1114
Bsp68I TCGCGA 1 cut(s) 804
BspACI CCGC 4 cut(s) 253, 546, 603, 937
BspANI GGCC 3 cut(s) 634, 705, 1086
BspCNI CTCAG 2 cut(s) 823, 1143
BspDI ATCGAT 1 cut(s) 1117
BspFNI CGCG 2 cut(s) 431, 804
BspMAI CTGCAG 2 cut(s) 343, 951
BspMI ACCTGC 1 cut(s) 406
BspPI GGATC 1 cut(s) 116
BspT104I TTCGAA 2 cut(s) 480, 870
BsrDI GCAATG 1 cut(s) 267
BsrI ACTGG 2 cut(s) 369, 706
BssECI CCNNGG 1 cut(s) 1194
BssMI GATC 5 cut(s) 121, 214, 461, 616, 1114
BssT1I CCWWGG 1 cut(s) 1194
Bst4CI ACNGT 2 cut(s) 778, 1185
Bst6I CTCTTC 1 cut(s) 1029
BstBI TTCGAA 2 cut(s) 480, 870
BstC8I GCNNGC 1 cut(s) 316
BstDEI CTNAG 6 cut(s) 133, 522, 810, 815, 1130, 1247
BstF5I GGATG 4 cut(s) 153, 249, 493, 748
BstFNI CGCG 2 cut(s) 431, 804
BstH2I RGCGCY 1 cut(s) 353
BstHHI GCGC 2 cut(s) 352, 433
BstKTI GATC 5 cut(s) 124, 217, 464, 619, 1117
BstMAI GTCTC 2 cut(s) 1133, 1195
BstMBI GATC 5 cut(s) 121, 214, 461, 616, 1114
BstMWI GCNNNNNNNGC 3 cut(s) 244, 278, 347
BstNSI RCATGY 1 cut(s) 158
BstPAI GACNNNNGTC 1 cut(s) 13
BstSFI CTRYAG 2 cut(s) 339, 947
BstUI CGCG 2 cut(s) 431, 804
BstV1I GCAGC 3 cut(s) 325, 486, 617
BstV2I GAAGAC 1 cut(s) 1000
BstX2I RGATCY 1 cut(s) 121
BstYI RGATCY 1 cut(s) 121
Bsu15I ATCGAT 1 cut(s) 1117
BsuI GTATCC 1 cut(s) 872
BsuRI GGCC 3 cut(s) 634, 705, 1086
BsuTUI ATCGAT 1 cut(s) 1117
BtsCI GGATG 4 cut(s) 153, 249, 493, 748
BtsI GCAGTG 3 cut(s) 121, 738, 756
BtsIMutI CAGTG 5 cut(s) 121, 699, 738, 756, 774
BtuMI TCGCGA 1 cut(s) 804
BveI ACCTGC 1 cut(s) 406
Cac8I GCNNGC 1 cut(s) 316
CfoI GCGC 2 cut(s) 352, 433
Cfr13I GGNCC 1 cut(s) 593
ClaI ATCGAT 1 cut(s) 1117
CseI GACGC 1 cut(s) 1260
Csp6I GTAC 4 cut(s) 298, 714, 754, 1124
CviAII CATG 5 cut(s) 11, 155, 676, 707, 1262
CviQI GTAC 4 cut(s) 298, 714, 754, 1124
DdeI CTNAG 6 cut(s) 133, 522, 810, 815, 1130, 1247
DpnI GATC 5 cut(s) 123, 216, 463, 618, 1116
DpnII GATC 5 cut(s) 121, 214, 461, 616, 1114
DraIII CACNNNGTG 1 cut(s) 778
EaeI YGGCCR 3 cut(s) 632, 703, 1084
Eam1104I CTCTTC 1 cut(s) 1029
EarI CTCTTC 1 cut(s) 1029
Eco130I CCWWGG 1 cut(s) 1194
Eco24I GRGCYC 1 cut(s) 141
Eco47I GGWCC 1 cut(s) 593
Eco47III AGCGCT 1 cut(s) 351
Eco57I CTGAAG 1 cut(s) 1131
EcoRI GAATTC 1 cut(s) 872
EcoT14I CCWWGG 1 cut(s) 1194
EcoT38I GRGCYC 1 cut(s) 141
ErhI CCWWGG 1 cut(s) 1194
Esp3I CGTCTC 1 cut(s) 1133
FaeI CATG 5 cut(s) 14, 158, 679, 710, 1265
FatI CATG 5 cut(s) 10, 154, 675, 706, 1261
FbaI TGATCA 1 cut(s) 214
Fnu4HI GCNGC 3 cut(s) 339, 500, 606
FokI GGATG 4 cut(s) 160, 236, 500, 755
FriOI GRGCYC 1 cut(s) 141
Fsp4HI GCNGC 3 cut(s) 339, 500, 606
FspBI CTAG 3 cut(s) 176, 402, 1273
GlaI GCGC 2 cut(s) 351, 432
GluI GCNGC 3 cut(s) 339, 500, 606
GsuI CTGGAG 2 cut(s) 642, 987
HaeII RGCGCY 1 cut(s) 353
HaeIII GGCC 3 cut(s) 634, 705, 1086
HgaI GACGC 1 cut(s) 1260
HhaI GCGC 2 cut(s) 352, 433
Hin1II CATG 5 cut(s) 14, 158, 679, 710, 1265
Hin6I GCGC 2 cut(s) 350, 431
HinP1I GCGC 2 cut(s) 350, 431
HindIII AAGCTT 1 cut(s) 827
HinfI GANTC 2 cut(s) 14, 769
HphI GGTGA 4 cut(s) 381, 387, 1030, 1163
Hpy166II GTNNAC 2 cut(s) 262, 754
Hpy188I TCNGA 4 cut(s) 163, 461, 878, 1111
Hpy188III TCNNGA 3 cut(s) 263, 560, 803
Hpy8I GTNNAC 2 cut(s) 262, 754
HpyAV CCTTC 3 cut(s) 288, 476, 842
HpyCH4III ACNGT 2 cut(s) 778, 1185
HpyCH4IV ACGT 3 cut(s) 21, 898, 1126
HpyF10VI GCNNNNNNNGC 3 cut(s) 244, 278, 347
HpyF3I CTNAG 6 cut(s) 133, 522, 810, 815, 1130, 1247
HpySE526I ACGT 3 cut(s) 21, 898, 1126
Hsp92II CATG 5 cut(s) 14, 158, 679, 710, 1265
HspAI GCGC 2 cut(s) 350, 431
Ksp22I TGATCA 1 cut(s) 214
Kzo9I GATC 5 cut(s) 121, 214, 461, 616, 1114
Lsp1109I GCAGC 3 cut(s) 325, 486, 617
LweI GCATC 3 cut(s) 138, 199, 1192
MaeI CTAG 3 cut(s) 176, 402, 1273
MaeII ACGT 3 cut(s) 21, 898, 1126
MaeIII GTNAC 6 cut(s) 283, 541, 785, 914, 1049, 1231
MalI GATC 5 cut(s) 123, 216, 463, 618, 1116
MboI GATC 5 cut(s) 121, 214, 461, 616, 1114
MboII GAAGA 4 cut(s) 1005, 1046, 1124, 1211
MflI RGATCY 1 cut(s) 121
MhlI GDGCHC 1 cut(s) 141
MlsI TGGCCA 2 cut(s) 634, 705
MluNI TGGCCA 2 cut(s) 634, 705
MlyI GAGTC 1 cut(s) 23
MmeI TCCRAC 1 cut(s) 677
Mox20I TGGCCA 2 cut(s) 634, 705
MscI TGGCCA 2 cut(s) 634, 705
MseI TTAA 3 cut(s) 24, 345, 1080
MslI CAYNNNNRTG 1 cut(s) 887
Msp20I TGGCCA 2 cut(s) 634, 705
Mva1269I GAATGC 1 cut(s) 841
MvnI CGCG 2 cut(s) 431, 804
MwoI GCNNNNNNNGC 3 cut(s) 244, 278, 347
NdeII GATC 5 cut(s) 121, 214, 461, 616, 1114
NlaIII CATG 5 cut(s) 14, 158, 679, 710, 1265
NmuCI GTSAC 2 cut(s) 283, 1231
NruI TCGCGA 1 cut(s) 804
NspI RCATGY 1 cut(s) 158
NspV TTCGAA 2 cut(s) 480, 870
PaqCI CACCTGC 1 cut(s) 406
PcsI WCGNNNNNNNCGW 1 cut(s) 1123
PctI GAATGC 1 cut(s) 841
PfeI GAWTC 1 cut(s) 769
PflFI GACNNNGTC 1 cut(s) 671
PkrI GCNGC 3 cut(s) 340, 501, 607
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
PshAI GACNNNNGTC 1 cut(s) 13
Psp1406I AACGTT 2 cut(s) 21, 898
PspPI GGNCC 1 cut(s) 593
PstI CTGCAG 2 cut(s) 343, 951
PsuI RGATCY 1 cut(s) 121
PsyI GACNNNGTC 1 cut(s) 671
RruI TCGCGA 1 cut(s) 804
RsaI GTAC 4 cut(s) 299, 715, 755, 1125
RsaNI GTAC 4 cut(s) 298, 714, 754, 1124
RseI CAYNNNNRTG 1 cut(s) 887
SaqAI TTAA 3 cut(s) 24, 345, 1080
SatI GCNGC 3 cut(s) 339, 500, 606
Sau3AI GATC 5 cut(s) 121, 214, 461, 616, 1114
Sau96I GGNCC 1 cut(s) 593
SchI GAGTC 1 cut(s) 23
SduI GDGCHC 1 cut(s) 141
SfaNI GCATC 3 cut(s) 138, 199, 1192
SfcI CTRYAG 2 cut(s) 339, 947
SfuI TTCGAA 2 cut(s) 480, 870
SinI GGWCC 1 cut(s) 593
SmiMI CAYNNNNRTG 1 cut(s) 887
SmlI CTYRAG 2 cut(s) 239, 288
SmoI CTYRAG 2 cut(s) 239, 288
SsiI CCGC 4 cut(s) 253, 546, 603, 937
SspMI CTAG 3 cut(s) 176, 402, 1273
StyI CCWWGG 1 cut(s) 1194
TaaI ACNGT 2 cut(s) 778, 1185
TaiI ACGT 3 cut(s) 24, 901, 1129
TaqI TCGA 6 cut(s) 17, 193, 480, 870, 1117, 1158
TfiI GAWTC 1 cut(s) 769
Tru1I TTAA 3 cut(s) 24, 345, 1080
Tru9I TTAA 3 cut(s) 24, 345, 1080
TscAI CASTG 5 cut(s) 121, 706, 738, 756, 781
TseFI GTSAC 2 cut(s) 283, 1231
TseI GCWGC 3 cut(s) 338, 499, 605
Tsp45I GTSAC 2 cut(s) 283, 1231
TspDTI ATGAA 3 cut(s) 102, 453, 1238
TspGWI ACGGA 1 cut(s) 464
TspRI CASTG 5 cut(s) 121, 706, 738, 756, 781
Tth111I GACNNNGTC 1 cut(s) 671
VpaK11BI GGWCC 1 cut(s) 593
XapI RAATTY 4 cut(s) 583, 598, 864, 872
XceI RCATGY 1 cut(s) 158
XcmI CCANNNNNNNNNTGG 1 cut(s) 1011
XspI CTAG 3 cut(s) 176, 402, 1273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.