Rmu_sc0001939.1_g000015

Tryptophan aminotransferase-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001939.1
OG0001908
Physical Location & Seq
Reverse (-)
72989 .. 76199
3211 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1296 bp
atggacatggaggtcagtgggagctcagttggagcagaagggcagcagaagaagccgagtacgtcgccgccgtcccttgctcggggcatggcagaacctacttggatggcttggttcttgatggcaagcaacccgcttgtgagtgcaattcttgctatggaggctcagattgttctcaagcccttttggatgcaacatgcttctgaaagtgcaattctagtagcagggtggcatcgaatgggctatactttccctgatcaggcttacatctcacaagagcttgagaggctcatccgcaaagtacacgacattgctggtaatgcagtcactcaaggaaggtacattgtaattggtgctggctcaacccatctcctcaacgctgcagttaaagcgctctctttctcatcaaccagtagtttcaactcatcatcatcctcacctgctagtgttgttgtttcaattcctttttacgcgctttatgaagcgcaaacggaatacttccgatcagtggattacaagtttgaaggggatggttcgttgctgcagaacatcacagatggaactaagagggttattgagtttgtaaccgcaccaaacaatcctgatgggaagctaaataaagcaaattttcaaggaccaaattccgaagcaatctatgatcgtgtttattattggccacatttcacaccaattccaactccagcaaatgacaatgtcatggtgttttcaatttccaagctcacaggccatgctggtacaagattagggtgggcagtgataaaggatgaggaagtgtaccaaagaatgttgcagcatactctgacaagtaacttgggtatttctcgcgatgctcagctaagagctttgaagcttttgaaagtaatcgtagaaggtggaggaaaagaaattttccaattcggatacaccactatgaggaaccgttgggaaaatttgagtaacgccctgtctctgtcaaaccgcttttctctgcagaaagttgaacctcagtactgcacttttttccagaaaattagaggaccatctcctgcctttgcgtgggtgaagtgcgagagggaagaggataaagattgctacacagtcctcaaagaagaagctaatgtttacggccgtagtggaagtgtctttggtgctgaagatcgatatgtacgtctcgccctcataaggagccaagatgatttcgatatattgctttaccgactgaaccagttagtctccaaggaagatgcacagccccaaatttatatgaaaaatgtgacaaacccatcactttcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Alliinase_C EGF_alliinase

Protein Analysis

431

Amino Acids

48.2

Weight (kDa)

7.06

Isoelectric Point (pI)

38.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alliinase_C PF04864 57 - 411 1.1e-135 Allinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 448
AasI GACNNNNNNGTC 1 cut(s) 11
Acc36I ACCTGC 1 cut(s) 448
AccII CGCG 2 cut(s) 473, 846
AciI CCGC 5 cut(s) 68, 134, 295, 588, 979
AcoI YGGCCR 2 cut(s) 674, 1126
AcsI RAATTY 5 cut(s) 625, 640, 906, 949, 1257
AcuI CTGAAG 1 cut(s) 1173
AfaI GTAC 7 cut(s) 61, 303, 341, 757, 797, 1010, 1167
AfeI AGCGCT 1 cut(s) 393
AfiI CCNNNNNNNGG 7 cut(s) 81, 82, 259, 508, 933, 1056, 1182
AgsI TTSAA 8 cut(s) 421, 459, 524, 632, 729, 868, 877, 1001
AluBI AGCT 8 cut(s) 24, 280, 613, 739, 856, 863, 871, 1115
AluI AGCT 8 cut(s) 24, 280, 613, 739, 856, 863, 871, 1115
Alw21I GWGCWC 1 cut(s) 26
Alw26I GTCTC 3 cut(s) 972, 1175, 1237
Ama87I CYCGRG 1 cut(s) 81
Aor51HI AGCGCT 1 cut(s) 393
AoxI GGCC 3 cut(s) 674, 745, 1126
ApeKI GCWGC 4 cut(s) 43, 380, 541, 811
ApoI RAATTY 5 cut(s) 625, 640, 906, 949, 1257
AspLEI GCGC 3 cut(s) 394, 475, 487
AspS9I GGNCC 2 cut(s) 635, 1037
AsuHPI GGTGA 2 cut(s) 429, 1072
AvaI CYCGRG 1 cut(s) 81
AvaII GGWCC 2 cut(s) 635, 1037
BalI TGGCCA 1 cut(s) 676
BanII GRGCYC 1 cut(s) 26
Bbv12I GWGCWC 1 cut(s) 26
BbvI GCAGC 4 cut(s) 55, 367, 528, 823
BccI CCATC 8 cut(s) 100, 115, 375, 524, 551, 599, 1048, 1291
BceAI ACGGC 3 cut(s) 55, 1113, 1141
BciVI GTATCC 1 cut(s) 914
BclI TGATCA 1 cut(s) 256
BcoDI GTCTC 3 cut(s) 972, 1175, 1237
BfaI CTAG 2 cut(s) 218, 444
BfmI CTRYAG 3 cut(s) 381, 542, 989
BfoI RGCGCY 1 cut(s) 395
BfuAI ACCTGC 1 cut(s) 448
BfuI GTATCC 1 cut(s) 914
BisI GCNGC 5 cut(s) 44, 68, 381, 542, 812
BlpI GCTNAGC 1 cut(s) 852
BlsI GCNGC 5 cut(s) 45, 69, 382, 543, 813
BmcAI AGTACT 1 cut(s) 1010
Bme18I GGWCC 2 cut(s) 635, 1037
BmeT110I CYCGRG 1 cut(s) 81
BmgT120I GGNCC 2 cut(s) 635, 1037
BmiI GGNNCC 2 cut(s) 938, 1187
BmsI GCATC 4 cut(s) 180, 241, 838, 1234
BpmI CTGGAG 1 cut(s) 684
Bpu1102I GCTNAGC 1 cut(s) 852
BpuEI CTTGAG 3 cut(s) 161, 302, 315
Bsa29I ATCGAT 1 cut(s) 1159
BsaJI CCNNGG 1 cut(s) 1236
Bsc4I CCNNNNNNNGG 7 cut(s) 81, 82, 259, 508, 933, 1056, 1182
Bse1I ACTGG 2 cut(s) 411, 1225
Bse3DI GCAATG 1 cut(s) 309
BseCI ATCGAT 1 cut(s) 1159
BseDI CCNNGG 1 cut(s) 1236
BseGI GGATG 6 cut(s) 111, 195, 291, 431, 535, 790
BseLI CCNNNNNNNGG 7 cut(s) 81, 82, 259, 508, 933, 1056, 1182
BseMI GCAATG 1 cut(s) 309
BseMII CTCAG 4 cut(s) 39, 179, 866, 1019
BseNI ACTGG 2 cut(s) 411, 1225
BseRI GAGGAG 1 cut(s) 362
BseX3I CGGCCG 1 cut(s) 1126
BseXI GCAGC 4 cut(s) 55, 367, 528, 823
BsgI GTGCAG 1 cut(s) 997
Bsh1236I CGCG 2 cut(s) 473, 846
Bsh1285I CGRYCG 1 cut(s) 1129
BshFI GGCC 3 cut(s) 676, 747, 1128
BshVI ATCGAT 1 cut(s) 1159
BsiEI CGRYCG 1 cut(s) 1129
BsiHKAI GWGCWC 1 cut(s) 26
BsiHKCI CYCGRG 1 cut(s) 81
BslFI GGGAC 1 cut(s) 58
BslI CCNNNNNNNGG 7 cut(s) 81, 82, 259, 508, 933, 1056, 1182
BsmAI GTCTC 3 cut(s) 972, 1175, 1237
BsmBI CGTCTC 1 cut(s) 1175
BsmFI GGGAC 1 cut(s) 58
BsnI GGCC 3 cut(s) 676, 747, 1128
BsoBI CYCGRG 1 cut(s) 81
Bsp1286I GDGCHC 1 cut(s) 26
Bsp143I GATC 4 cut(s) 256, 503, 658, 1156
Bsp1720I GCTNAGC 1 cut(s) 852
Bsp68I TCGCGA 1 cut(s) 846
BspACI CCGC 5 cut(s) 68, 134, 295, 588, 979
BspANI GGCC 3 cut(s) 676, 747, 1128
BspCNI CTCAG 4 cut(s) 38, 178, 865, 1018
BspDI ATCGAT 1 cut(s) 1159
BspFNI CGCG 2 cut(s) 473, 846
BspLI GGNNCC 2 cut(s) 938, 1187
BspMAI CTGCAG 3 cut(s) 385, 546, 993
BspMI ACCTGC 1 cut(s) 448
BsrDI GCAATG 1 cut(s) 309
BsrI ACTGG 2 cut(s) 411, 1225
BssECI CCNNGG 1 cut(s) 1236
BssMI GATC 4 cut(s) 256, 503, 658, 1156
BssT1I CCWWGG 1 cut(s) 1236
Bst4CI ACNGT 2 cut(s) 941, 1099
Bst6I CTCTTC 1 cut(s) 1071
BstAPI GCANNNNNTGC 1 cut(s) 152
BstC8I GCNNGC 2 cut(s) 127, 358
BstDEI CTNAG 7 cut(s) 25, 165, 564, 852, 857, 1005, 1293
BstF5I GGATG 6 cut(s) 111, 195, 291, 431, 535, 790
BstFNI CGCG 2 cut(s) 473, 846
BstH2I RGCGCY 1 cut(s) 395
BstHHI GCGC 3 cut(s) 394, 475, 487
BstKTI GATC 4 cut(s) 259, 506, 661, 1159
BstMAI GTCTC 3 cut(s) 972, 1175, 1237
BstMBI GATC 4 cut(s) 256, 503, 658, 1156
BstMCI CGRYCG 1 cut(s) 1129
BstMWI GCNNNNNNNGC 6 cut(s) 52, 152, 161, 286, 320, 389
BstNSI RCATGY 1 cut(s) 200
BstSFI CTRYAG 3 cut(s) 381, 542, 989
BstUI CGCG 2 cut(s) 473, 846
BstV1I GCAGC 4 cut(s) 55, 367, 528, 823
BstZI CGGCCG 1 cut(s) 1126
Bsu15I ATCGAT 1 cut(s) 1159
BsuI GTATCC 1 cut(s) 914
BsuRI GGCC 3 cut(s) 676, 747, 1128
BsuTUI ATCGAT 1 cut(s) 1159
BtgZI GCGATG 1 cut(s) 861
BtsCI GGATG 6 cut(s) 111, 195, 291, 431, 535, 790
BtsI GCAGTG 1 cut(s) 780
BtsIMutI CAGTG 3 cut(s) 22, 513, 780
BtuMI TCGCGA 1 cut(s) 846
BveI ACCTGC 1 cut(s) 448
Cac8I GCNNGC 2 cut(s) 127, 358
CfoI GCGC 3 cut(s) 394, 475, 487
Cfr13I GGNCC 2 cut(s) 635, 1037
ClaI ATCGAT 1 cut(s) 1159
Csp6I GTAC 7 cut(s) 60, 302, 340, 756, 796, 1009, 1166
CviAII CATG 5 cut(s) 7, 88, 197, 718, 749
CviQI GTAC 7 cut(s) 60, 302, 340, 756, 796, 1009, 1166
DdeI CTNAG 7 cut(s) 25, 165, 564, 852, 857, 1005, 1293
DpnI GATC 4 cut(s) 258, 505, 660, 1158
DpnII GATC 4 cut(s) 256, 503, 658, 1156
DrdI GACNNNNNNGTC 1 cut(s) 11
DseDI GACNNNNNNGTC 1 cut(s) 11
EaeI YGGCCR 2 cut(s) 674, 1126
EagI CGGCCG 1 cut(s) 1126
Eam1104I CTCTTC 1 cut(s) 1071
EarI CTCTTC 1 cut(s) 1071
Ecl136II GAGCTC 1 cut(s) 24
EclXI CGGCCG 1 cut(s) 1126
Eco130I CCWWGG 1 cut(s) 1236
Eco24I GRGCYC 1 cut(s) 26
Eco47I GGWCC 2 cut(s) 635, 1037
Eco47III AGCGCT 1 cut(s) 393
Eco52I CGGCCG 1 cut(s) 1126
Eco53kI GAGCTC 1 cut(s) 24
Eco57I CTGAAG 1 cut(s) 1173
Eco88I CYCGRG 1 cut(s) 81
EcoICRI GAGCTC 1 cut(s) 24
EcoT14I CCWWGG 1 cut(s) 1236
EcoT38I GRGCYC 1 cut(s) 26
ErhI CCWWGG 1 cut(s) 1236
Esp3I CGTCTC 1 cut(s) 1175
FaeI CATG 5 cut(s) 10, 91, 200, 721, 752
FaqI GGGAC 1 cut(s) 58
FatI CATG 5 cut(s) 6, 87, 196, 717, 748
FauI CCCGC 1 cut(s) 141
FbaI TGATCA 1 cut(s) 256
Fnu4HI GCNGC 5 cut(s) 44, 68, 381, 542, 812
FokI GGATG 6 cut(s) 118, 202, 278, 418, 542, 797
FriOI GRGCYC 1 cut(s) 26
Fsp4HI GCNGC 5 cut(s) 44, 68, 381, 542, 812
FspBI CTAG 2 cut(s) 218, 444
GlaI GCGC 3 cut(s) 393, 474, 486
GluI GCNGC 5 cut(s) 44, 68, 381, 542, 812
GsuI CTGGAG 1 cut(s) 684
HaeII RGCGCY 1 cut(s) 395
HaeIII GGCC 3 cut(s) 676, 747, 1128
HhaI GCGC 3 cut(s) 394, 475, 487
Hin1II CATG 5 cut(s) 10, 91, 200, 721, 752
Hin6I GCGC 3 cut(s) 392, 473, 485
HinP1I GCGC 3 cut(s) 392, 473, 485
HindIII AAGCTT 1 cut(s) 869
HphI GGTGA 2 cut(s) 429, 1072
Hpy166II GTNNAC 3 cut(s) 304, 796, 1123
Hpy188I TCNGA 6 cut(s) 168, 205, 503, 646, 822, 920
Hpy188III TCNNGA 4 cut(s) 118, 602, 845, 1024
Hpy8I GTNNAC 3 cut(s) 304, 796, 1123
Hpy99I CGWCG 1 cut(s) 67
HpyAV CCTTC 4 cut(s) 32, 330, 518, 884
HpyCH4III ACNGT 2 cut(s) 941, 1099
HpyCH4IV ACGT 2 cut(s) 62, 1168
HpyF10VI GCNNNNNNNGC 6 cut(s) 52, 152, 161, 286, 320, 389
HpyF3I CTNAG 7 cut(s) 25, 165, 564, 852, 857, 1005, 1293
HpySE526I ACGT 2 cut(s) 62, 1168
Hsp92II CATG 5 cut(s) 10, 91, 200, 721, 752
HspAI GCGC 3 cut(s) 392, 473, 485
Ksp22I TGATCA 1 cut(s) 256
Kzo9I GATC 4 cut(s) 256, 503, 658, 1156
LmnI GCTCC 3 cut(s) 21, 32, 1185
Lsp1109I GCAGC 4 cut(s) 55, 367, 528, 823
LweI GCATC 4 cut(s) 180, 241, 838, 1234
MaeI CTAG 2 cut(s) 218, 444
MaeII ACGT 2 cut(s) 62, 1168
MaeIII GTNAC 5 cut(s) 325, 583, 827, 956, 1273
MalI GATC 4 cut(s) 258, 505, 660, 1158
MboI GATC 4 cut(s) 256, 503, 658, 1156
MboII GAAGA 5 cut(s) 61, 1088, 1121, 1166, 1253
MhlI GDGCHC 1 cut(s) 26
MlsI TGGCCA 1 cut(s) 676
MluNI TGGCCA 1 cut(s) 676
MmeI TCCRAC 2 cut(s) 10, 719
Mox20I TGGCCA 1 cut(s) 676
MscI TGGCCA 1 cut(s) 676
MseI TTAA 1 cut(s) 387
MslI CAYNNNNRTG 1 cut(s) 929
Msp20I TGGCCA 1 cut(s) 676
MvnI CGCG 2 cut(s) 473, 846
MwoI GCNNNNNNNGC 6 cut(s) 52, 152, 161, 286, 320, 389
NdeII GATC 4 cut(s) 256, 503, 658, 1156
NlaIII CATG 5 cut(s) 10, 91, 200, 721, 752
NlaIV GGNNCC 2 cut(s) 938, 1187
NmeAIII GCCGAG 1 cut(s) 81
NmuCI GTSAC 2 cut(s) 325, 1273
NruI TCGCGA 1 cut(s) 846
NspI RCATGY 1 cut(s) 200
PaqCI CACCTGC 1 cut(s) 448
PcsI WCGNNNNNNNCGW 2 cut(s) 68, 1165
PflFI GACNNNGTC 1 cut(s) 713
PkrI GCNGC 5 cut(s) 45, 69, 382, 543, 813
Psp124BI GAGCTC 1 cut(s) 26
PspN4I GGNNCC 2 cut(s) 938, 1187
PspPI GGNCC 2 cut(s) 635, 1037
PstI CTGCAG 3 cut(s) 385, 546, 993
PsyI GACNNNGTC 1 cut(s) 713
RruI TCGCGA 1 cut(s) 846
RsaI GTAC 7 cut(s) 61, 303, 341, 757, 797, 1010, 1167
RsaNI GTAC 7 cut(s) 60, 302, 340, 756, 796, 1009, 1166
RseI CAYNNNNRTG 1 cut(s) 929
SacI GAGCTC 1 cut(s) 26
SaqAI TTAA 1 cut(s) 387
SatI GCNGC 5 cut(s) 44, 68, 381, 542, 812
Sau3AI GATC 4 cut(s) 256, 503, 658, 1156
Sau96I GGNCC 2 cut(s) 635, 1037
ScaI AGTACT 1 cut(s) 1010
SduI GDGCHC 1 cut(s) 26
SfaNI GCATC 4 cut(s) 180, 241, 838, 1234
SfcI CTRYAG 3 cut(s) 381, 542, 989
SinI GGWCC 2 cut(s) 635, 1037
SmiMI CAYNNNNRTG 1 cut(s) 929
SmlI CTYRAG 3 cut(s) 176, 281, 330
SmoI CTYRAG 3 cut(s) 176, 281, 330
SsiI CCGC 5 cut(s) 68, 134, 295, 588, 979
SspMI CTAG 2 cut(s) 218, 444
SstI GAGCTC 1 cut(s) 26
StyI CCWWGG 1 cut(s) 1236
TaaI ACNGT 2 cut(s) 941, 1099
TaiI ACGT 2 cut(s) 65, 1171
TaqI TCGA 3 cut(s) 235, 1159, 1200
TatI WGTACW 2 cut(s) 301, 1008
TauI GCSGC 1 cut(s) 70
Tru1I TTAA 1 cut(s) 387
Tru9I TTAA 1 cut(s) 387
TscAI CASTG 3 cut(s) 22, 513, 780
TseFI GTSAC 2 cut(s) 325, 1273
TseI GCWGC 4 cut(s) 43, 380, 541, 811
Tsp45I GTSAC 2 cut(s) 325, 1273
TspDTI ATGAA 2 cut(s) 495, 1280
TspGWI ACGGA 1 cut(s) 506
TspRI CASTG 3 cut(s) 22, 513, 780
Tth111I GACNNNGTC 1 cut(s) 713
VpaK11BI GGWCC 2 cut(s) 635, 1037
XapI RAATTY 5 cut(s) 625, 640, 906, 949, 1257
XceI RCATGY 1 cut(s) 200
XspI CTAG 2 cut(s) 218, 444
ZrmI AGTACT 1 cut(s) 1010
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.